Array 1 1466-756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUL010000029.1 Campylobacter concisus isolate 2010-164712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1465 37 100.0 40 ..................................... TTGTCTCCGTTCATTTGTAGAATTACTACTTGTGCCATGA 1388 37 100.0 41 ..................................... TCATCGCAGCCCGCGAAACCGACAACAGCACGACTATTAGG 1310 37 100.0 34 ..................................... GCGCTACCTATCCCTGGGTACCCAAAGAATGCGC 1239 37 97.3 34 ......................A.............. GGATTAACTGAGCGAGAGCCTGATGCTTGTGGCC 1168 37 100.0 40 ..................................... AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 1091 37 94.6 39 ......................TT............. CATTATCTATCTCTATGGTTTGCAAATCCATCTGTTTGT 1015 37 94.6 37 ....................G..T............. AACTCAACTTCAAGGGGCACAGCTTCGATGTATTTAG 941 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 866 37 100.0 38 ..................................... ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 791 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 97.3 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGC # Right flank : TCCATAATCCATATATAAATTTAGGCCATTTCGCTTACATAAAAATTGTAAATCTTTTTGCTGTCATTTTTTGTGACGTATCTTGTCCATGTTTCATTTTAAATTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAATAGCAAGAGATGTGATAATAGTGGCATCTATCAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAAGATCTATATAAGAAAGCAAAAGCGTTTAAATTGTCCTAAGCTTGAATAAGTCTATTACCAAAAAACACTATGATGCCTACTCAAATGTGATCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTATAGTCGTCAGCACTTTTTATCGTAAAAGTATTTTTCGCAATTATTTTTTTACACCAGTGATATTATCATTTATGATAACTTTTGAGTAGAAATATTTTAATGTGAGCTTGGTATTTTTAACA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5248-4769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUL010000019.1 Campylobacter concisus isolate 2010-164712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5247 36 97.2 40 .................T.................. CCAGATCTTTCGATCTTCCCTCCGTTCATTTCTAATATAG 5171 36 97.2 39 ..................T................. TCAGATGTTTGCAAGTAACGGCGCGGCAACTCTTTCGTC 5096 36 100.0 39 .................................... CGTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 5021 36 91.7 38 G.....................TT............ CTTTAATGCGATCTTTGATCCGTCGCTAGCGGTTTTTA 4947 36 86.1 26 .......................GC..TA...T... CAAATTTGACCCGATCGCGGTTTTTA TTTT [4917] Deletion [4886] 4881 36 100.0 38 .................................... CGATGTTAGAAATCAATTTATACTTAAAGGAAAAATTT 4807 36 97.2 0 ....................C............... | AA,C [4774,4777] ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 95.6 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAA # Left flank : AAATTTGACCCGATCAAGGGGATTGAAACGATGTTAGAAATCAATTTATACTTAAAGGAAAAATT # Right flank : ATGGTAAAGCGTAGGCGCTTTATGTTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGCGATTTGCGTAGATAAATAAAAGATACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGGGTGAATTATAAAGTGGTGTGTGGACATATTGTGTATAATTCTTAATAACTTTAGAATATAAAGGATAAAGTAATGGACGCCCAAACCAGGATAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 122838-122579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUL010000007.1 Campylobacter concisus isolate 2010-164712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 122837 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 122756 29 100.0 45 ............................. GCTAAGTTTAATGTATCATTTGATAACATTTTGTTTGATTTAAAC 122682 29 93.1 43 ............G.A.............. CATAAGCTTCCAGCCTAGATATATCCTGCAATAAAATTTAAAC 122610 29 93.1 0 ..............T.............T | AA,C [122584,122587] ========== ====== ====== ====== ============================= ==================================================== ================== 4 29 96.6 47 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TAGCGCATACCCAAAGGCTCCTCGCACCTGCGAGCCTATAAAAAATGGCGGCTTTTGTGATGGCTCAAATTTCACTCTAAGCTCGGCGTACCTCATCAAAACTCCTTATCTTCACATAGTCTAAAACCGCGCCTACCATGCTCTTTTAGGCCATTTTTCTATTTGTTTTAAGTTTGGGGATAAATTTATTAAGATCTGGTAATTTTATCGGCACACCAAGACCATCTCTTGCCGCCCTTATATTGTGAGAAAAGGTCAAAATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGAATTAAAGGCAAATGTTTATATTTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGCATATTTTGTACGCACATTTAACACTTTTGGCTTTTAGCTTAAATTTCCATCTTTTTTGCTAAAATTTCGAAAATTTGTGATTATAAAGATATTTAAAATAGGTTCTTTTACTTATCATTGTT # Right flank : TTGGAAAGTATATGTGGTGGATTATATTGTTATTTGTAAAAATAAATGGGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGGCTTATGAAGGACTGCAATAATGATAGATTTTTGCGATTTGCGTAGATAAATAAAAGCTACGACAACGACTCCCGCAAGATAAACCAAAAGAGAAATTTATACGCCACCAAGATCGCCTCGGATTCTACGCTTCATATCAATCAGATCGGAGTCCATCTAGGTCTTAGCAAAAACAAATTTGTCATAAAACAATACGGCAAAATTTATAAAGAATTTCCCATTTCTAAAATTTCCCGCATCATCGTTGATAGCGAGTATATCTCGCTATCTTCTGCGGTGATCTGGCGCTGCACAAGGGAAAAAATCCATATCGACTTTATAGACAAGCACTACGTCCCATACGCCACTTTGCTAGCTTACAACAGCGTCTCTGCGCAAACTACGTACAAACAAGCC # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.19, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //