Array 1 3-458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDMW010000184.1 Limosilactobacillus fermentum strain UBLF-31 NODE_1256_length_458_cov_94.950131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. GGGAGCATTGTGAACAAATCGTCAAAAGTGGT 64 29 96.6 32 ............................A TGGCTATGTAACAGCATTCGACATTGCGCCAA 125 29 100.0 32 ............................. CGGGTTGCAGTTGTTTGATGACAAACCAATCA 186 29 100.0 32 ............................. TGTGCGTGTCCTGGTGAAGCTGTTTCCCGGTC 247 29 100.0 32 ............................. CAATTGTTGCATTGCTGGCCGGTCTAGGGATG 308 29 100.0 32 ............................. CCGGACTTGGAAAGCGTTGAGCACGCACTCCA 369 29 100.0 32 ............................. TAATCCTTCGGTTAAAAATTCGCTTAAATCAA 430 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : TAG # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDMW010000203.1 Limosilactobacillus fermentum strain UBLF-31 NODE_1340_length_827_cov_100.478667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 ............................C CGATCGTCCTGGTTAGCAAGGTGAATCCTTAC 66 29 100.0 32 ............................. ATCCAAACAAAGCGGGCAAAAAAGAAGCATTT 127 29 100.0 33 ............................. CACAAGTGTCCACCAGTAGCTCGGGGAGCAATG 189 29 96.6 32 ............................C AATTAGATTAAAGATCTGACCTTCTAGTGCTT 250 29 100.0 32 ............................. ATCCTGTTCAAACTGTCCGGCTTGGCTCTTAA 311 29 100.0 32 ............................. CCGTGTTGCTTTTCTAAATAACTCCACAAATG 372 29 96.6 32 ............................C ATTGATGTGATCGATGAGCATTCTCACGATCG 433 29 100.0 32 ............................. GGGATGAGTGGATGAAACAATCAATCATGGAC 494 29 100.0 32 ............................. TAGTAAGGCTTTGGAGGCCGGTTATGGTATTA 555 29 100.0 32 ............................. TTAATCGATTTAAACTATGCGTCGGCCAGTGC 616 29 96.6 32 ............................C CCGAAAGTCCCAACCATCTGACATGCTCCACA 677 29 93.1 32 .......A....................C TAGCTATTGCCTTCGTTACGAGGTTAATTGTA 738 29 100.0 32 ............................. CGCTGAGGCCATTCAAGCACGAGCTAAGGTCA 799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : TCAAG # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9835-10536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDMW010000206.1 Limosilactobacillus fermentum strain UBLF-31 NODE_1349_length_10536_cov_144.372693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9835 29 100.0 33 ............................. GAAGAGGTAAAAATAATGATTACAGTTTATTTG 9897 29 100.0 32 ............................. ATTTTCATCTGCTAAGATTGGCTCTCCACAAG 9958 29 100.0 32 ............................. AACCGTGATATAGTAACCACAACGAACGCCCG 10019 29 96.6 32 ............................C CAGGTACGCCATCCACAACGCTGCCATTAGCA 10080 29 100.0 32 ............................. GTTTAACCATGATGGACTCAACATTCATTGTT 10141 29 100.0 32 ............................. TTACCAGTTGCTGGCTTGGCCTCGTAGACCAT 10202 29 100.0 32 ............................. GATGTCTACAACTTTTTCAGCCATACACATCA 10263 29 100.0 33 ............................. CGAGCAGATGCGGGTTGCATCCCCCTTCCTGTC 10325 29 100.0 32 ............................. CACCGAGCCTGACGGCAGTACGCCAATTGGCG 10386 29 100.0 33 ............................. ACTATGGACTGGTTACAGGCGATCCTAAGATGG 10448 29 100.0 32 ............................. ACAAGAGACTTTTTGCTAAGTCAATAAATTTA 10509 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : ACAAACAGTGAGATTATTTCAATCAGTGCAGTAAAAAGAACCAATGAACAACAAGTAGAGAAATTTAATCGATATATTAAAATAGAATCAGAAGTTCCAGCTACTATTCAAAAATTAACGGGGCTATCCAACGATTTTTTAAACTCAGAGGGTGAATCCTTAGAAAAAGTGTTGGAATACTTTCAAGTCTTTATTGGTAATAATGTTCTAGTTGGTTATAATTTGCTTTTTGATCAAAGTTTTCTTAACGCTGCATTTATAAAAGCAAATAAGCAAATTATTTCAAATCGTATGATTGATTTAATGCCAATTATAAAGAAGGATCAAAAGTTTTTAGATAATTATCGGTTAGCAACAGTTCTTAAGAATTATGGAATTGAGAATGACCATCCGCATAAATCTATATCTGATGCAATGGCTACTTTGGACCTAGCGCTTAAACTAATCAAAAATGACAAACTAAGGATCTAAAAAAGGCGTCATATAGGGATCTGTTTACG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 259-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDMW010000133.1 Limosilactobacillus fermentum strain UBLF-31 NODE_1162_length_307_cov_102.917391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 258 29 96.6 32 ............................C AATCCATTCCTCCCCCTGAAAAAAGATACTGC 197 29 100.0 32 ............................. TACATTCACGACACCACAGAAATTCAGATGAG 136 29 100.0 32 ............................. GTTTTTTTACTCTCTTTTGGGATTGATTGGTA 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : TATGTGGGGGTGATCCTACAAGAGACTTTTTGCTAAGTCAATAAATTT # Right flank : TGGGAGCATTGTGAACAAATCGTCAAAAGTGGTGTATTCCCCATGTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //