Array 1 5275-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVM01000003.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1513B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5274 33 100.0 34 ................................. TCCTTCTGCCACTTGTCGTGCGTGCGAATCTCGT 5207 33 100.0 34 ................................. AATGAAATACGGGACCATGTCATCTTATCCTTTC 5140 33 100.0 34 ................................. ACGCCGTTGTACGTGTAGCGCAGACGCGGGGCGG 5073 33 100.0 34 ................................. TCCTTGAATTTCGAGTACTGCGTGATCTCCTCGA 5006 33 100.0 34 ................................. ATAGACGGGCAGCGAACTGACTGCGGTCTGCAAT 4939 33 100.0 34 ................................. TTGAACTTGTCCACGCTGTCGCTCATGCCGATCA 4872 33 100.0 33 ................................. GCGTACTGCACGCCCTTGATGTGGTGCGCGGGC 4806 33 100.0 34 ................................. GATTATCCGCGACTTACCGTCTAATATTCACAAA 4739 33 100.0 34 ................................. ATATCGGGGCCGCCGCCGCGGTACGCGCTGAGCT 4672 33 100.0 34 ................................. CTCATATGGGGCGAGAATAATGGGCGGTTATTAT 4605 33 100.0 33 ................................. CCGCAATTGGATGACGATATTAAGACTGTGTTA 4539 33 100.0 34 ................................. CCGGCGATGGAGTTGAGGATGCGCTGCCAGTCCT 4472 33 100.0 33 ................................. CCGTTTCGGGTGCTGTTTCGATTGGGAACAGTT 4406 33 100.0 33 ................................. CACGTAGCAGCGACCGAACTGCACGGCGAATTG 4340 33 100.0 34 ................................. CAGTGAACTGCCGCAACCATGCGGCAGTAGTTGT 4273 33 100.0 33 ................................. GCGTTCGGTCACGCCGTCGCCCATATGCACGTG 4207 33 100.0 35 ................................. TTGTATTAGCCGTGCGCTAGTCTGACTATGAGTCG 4139 33 100.0 34 ................................. TATGCCGGTGATATGCGATAGCGGCACGCGTAGG 4072 33 100.0 35 ................................. AATTGCCGGAAAATCTCATGTGTATGAGCAATTTT 4004 33 100.0 33 ................................. ACGATCTTGCTCAGCGTGCGCGGGATAGATAGA 3938 33 100.0 34 ................................. GCTTCAGGGTTGAGCGGCATGTAAGTGTTTTTCG 3871 33 100.0 34 ................................. AGTAACATGGCAGCCGTTCGCGCGAAGATGGCCT 3804 33 100.0 34 ................................. TCCGGCAATACAATGCTTTCCTGCGTACCCTCAC 3737 33 100.0 34 ................................. CATCTGGATGCGGAGGACACGGTGACGCTAACAC 3670 33 100.0 34 ................................. AACGAAGAGTAATACAATAAACAATAACAATCAA 3603 33 100.0 33 ................................. GTCGAGGCCGCACACGAGAATGCCCTCGTTGTC 3537 33 100.0 34 ................................. CCACGGTATCGGGCCGGTGATACTGGAGCCGGAG 3470 33 100.0 33 ................................. AACGTCGCCGACATGGGCGACATCGTGAAGAAA 3404 33 100.0 34 ................................. AACGCATTGCGTAACGCAATGTCGCCACAATTTC 3337 33 100.0 33 ................................. TCACTGCGTTTACGGACGAGGGTGGAATGAGTG 3271 33 100.0 33 ................................. AATTCGCGACGAGCAGTTGCGCGATAATTACCG 3205 33 100.0 35 ................................. CGGCTGATGCCATTCTCATTGCGTTTACGGACGAG 3137 33 100.0 34 ................................. TCCCCTGAACCGATAATCTGCAACCGGGTTTCAA 3070 33 100.0 35 ................................. ATGTATTTTTGCACTCGTATTTGTTGCGAAAACTC 3002 33 100.0 34 ................................. AGTCGTGGGGCCTCGACCCCATCACGCTCACCGA 2935 33 100.0 33 ................................. ATGCAGCTACCGGATGACAATTATATCATATAT 2869 33 100.0 34 ................................. AGCACTGTGGAGTGCAATAAGTCAAGCGAGGCGG 2802 33 100.0 33 ................................. ATCGCGGAACTCATGGACGCGCCCATTAAATCC 2736 33 100.0 34 ................................. ACAAACGAAGAGTTCGCGGAGTTGACCGGATCGT 2669 33 100.0 34 ................................. GCTTGGGCTTCGGTGGAATCCCATGCGCCGACGT 2602 33 100.0 34 ................................. TCCGGCGAAACCAACGTGCCGGTCTCCTCACTGG 2535 33 100.0 34 ................................. CAAGGCGATGGATATGGTAAAGGCGTTCGATTCC 2468 33 100.0 35 ................................. TTGGACGGTGAGCGTGTAGTCGAATGGGTTGCCTG 2400 33 100.0 34 ................................. TCCGCGTGGTGCAGGTCCGGATGCGAGTTCTCGT 2333 33 100.0 34 ................................. ATCTCCAGCTCTGCATAATGGAAACACCGGACGA 2266 33 100.0 34 ................................. CATGTGGAGTATACTGCGTGTAGGGGAAAACGAG 2199 33 100.0 34 ................................. ACAGGGGCCAAGTGGAGCCAGCCGGTAATATTGC 2132 33 100.0 34 ................................. ACAGGGGCCAAGTGGAGCCAGCCGGTAATATTGC 2065 33 100.0 33 ................................. AGGTCTGCATCAGACCTTGCGGCTGGGATTGTA 1999 33 100.0 34 ................................. CAATACGTGAAATTGGTCATACACATCAGCGAAT 1932 33 100.0 34 ................................. TCGATGAATTTGAGGACGATCCACGGCGGGTCCT 1865 33 100.0 34 ................................. ATCGCCATAGCGGAGATGCTCGGCGAAAACCCAG 1798 33 100.0 33 ................................. GTAAAAGTGGTCATATTAGGCATCAATAGATTT 1732 33 100.0 32 ................................. CACCACGCTGCCACGATCATGCATCTCGTAGG 1667 33 100.0 34 ................................. CTCTTGTGCGCACCATTGGCAGACGTGCATGTGT 1600 33 100.0 34 ................................. CGCGAACAGATGCAGGTCATGCAGCAGAGGCTCG 1533 33 100.0 33 ................................. TCGCGGCCTTTTTCCGTAAAACTGGGGGGAGAG 1467 33 100.0 34 ................................. CTTGAGATACGCGAGCAGGTCGATGCCGAAGTAG 1400 33 100.0 36 ................................. CTCCAAAATGAGAGTGTGTTTGCCGATGATGCGGTC 1331 33 100.0 34 ................................. ATGTTGTGGGCGGCGTCGCCGATGGCTTGCAGTC 1264 33 100.0 34 ................................. TCAGAAACTCAGGGGCCGGACGAATTGGACTATC 1197 33 100.0 35 ................................. CACAACCGATTGAAACCACGAACCTCCACCCACAT 1129 33 100.0 34 ................................. TTGATGGTGTCCATCCAGTTGGACATGTTGTCGG 1062 33 100.0 33 ................................. AAACTTGAAAGAAACGCTCACGCCGCTTGGGGG 996 33 100.0 33 ................................. CCCTTACCCCATGGCTTGAAGGCACGCTCGCTC 930 33 100.0 34 ................................. CATCCACATCACACCAATCCACACAGAGGAGCCA 863 33 100.0 34 ................................. AGTCGATTTTGAGTACCTGACCCGGATAGATCAG 796 33 100.0 33 ................................. CTGCATGTTGACCAACGCGGTCTCACCATGGTC 730 33 100.0 34 ................................. AACGCGAGCGACGGTGTTTTGAGTTTGCCGGTGG 663 33 100.0 33 ................................. ACGTCGCCGATATGGGCGGCATCGTGAAGAAAA 597 33 100.0 34 ................................. TGGCGCAGACGGCTCTTGCCGAGCATGTCGGTGT 530 33 100.0 34 ................................. TCAGGGTTGAACGTGCATGGCGGCGCGGCGGTGA 463 33 100.0 35 ................................. GGATATTGCGCGGACATGGGCGCACGATGCTGCTG 395 33 100.0 34 ................................. ATATTGTGCAGTCCTTGTATTGCGGGATTATAAT 328 33 100.0 34 ................................. ACGCAACATGCCCGCCGCACGCCCGCCATACCAT 261 33 100.0 35 ................................. TTTTTCGTCCCGTCGTGGTCTTTTGTCGTGCTGTG 193 33 100.0 33 ................................. GTCGGTCGGCTCGTCGGCCGGGTGGGCGGGGAA 127 33 100.0 33 ................................. AAGCCGCTGGGCATCGAGTACAAGCTGGAGGGT 61 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 79 33 100.0 34 GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : ACGTCGCCAAGACATGCATGCGATTCGGGCAACGGGTTCAGAATAGTGTATTCGAATGCTCGATTGTGCCAGCCGACTACTTGATGCTGGTTTCAGATTTGCTGGAGATCATCGATAGAGAGAAAGATAATCTGCGCATCTACAAACTCGGCAAGAATTATGCAAGTAAGATTGAGAGTTATGGGCGCAATCTGCATATGCCATTCGATGATGTCATGATGATTTAAGCATAGACACTTATGGTTGAGGGGGCGTAGTGGTGCGAAGGGGATGCTGTCATGATTTCTCCGTAGGCTCGCACTGAAAGCGCTAGCTCTATACCAGAGTTTTCAACCGCATTGAGCGGATGTTGTTTGATAATTCAATAGTGTTTTCCACAATCCGGATTCAGTTCTGAGATATAGTAGTTAAGCATCGTTCGGTATGAGTTTTCTGCGATAGAATTCAGACTGAGCATGAACAAGGTGTCTGGAATATGGATCATTTTGTTCATTTTTGCC # Right flank : TAAGTTGTGTAATGTCACGTGGGACATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 27105-24733 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVM01000002.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1513B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 27104 33 100.0 35 ................................. TTTTTCGTCCCGTCGTGGTCTTTTGTCGTGCTGTG 27036 33 100.0 33 ................................. AAGCCGCTGGGCATCGAGTACAAGCTGGAGGGT 26970 33 100.0 34 ................................. AAGTTGTGTAATGTCACGTGGGACATGGGATATA 26903 33 100.0 35 ................................. TCGCTTTGCAGATTGATGAGCCGCATCCGGTTGCC 26835 33 100.0 34 ................................. ACGAACGATGTCCCAGTCTCGTTTGAACCGCCGC 26768 33 100.0 35 ................................. AAGCGGGCGTTGCACAATAGCGTGCGCACGCTCAA 26700 33 100.0 33 ................................. TGGCCAGGGATCTGGCCGACGGCCGCGGAGCCT 26634 33 100.0 32 ................................. GTTGAGCTGGCCGTCGTCGTGGGCATCGTCAC 26569 33 100.0 34 ................................. AAGCAGGCCGATCGTCTGCAGGACGCGCGCAGCC 26502 33 100.0 32 ................................. ATGGTCATAATGATGGCCTCCTTATCGGTCAT 26437 33 100.0 35 ................................. ATCGGCACCAGCGTCCACGCCCAATTCGAACACAT 26369 33 100.0 33 ................................. GGTCAATGTGTCGATGATGCGCGCCTGCCTGTT 26303 33 100.0 34 ................................. ACTGTCGAGGATGTCCATAAGCTTGTCGGCGCAG 26236 33 100.0 34 ................................. AATTGGTCGACGCGGTTGACTGCGCCGGACACCT 26169 33 100.0 35 ................................. TCACGAAACGCATAGCAGACGGCAGCACTCAGTTT 26101 33 100.0 33 ................................. ATGCCGGTGCGTGCGTGAACGGCCAATGGGCCG 26035 33 100.0 33 ................................. AGACCCGAAAACAGGCATATCAACTGCGTTCGA 25969 33 100.0 35 ................................. CCGACCGGCTGGAGTTGCCATAGTCTGCGGCACAG 25901 33 100.0 34 ................................. ACACTGGTGATGGCGTTGCGCACGTCCGAATCGA 25834 33 100.0 34 ................................. CCTGCGACACCCACGGATAATTCGATATGTACGC 25767 33 100.0 33 ................................. TTATTGTAGGTGGAATCCCATAGGTCAATTGCC 25701 33 100.0 33 ................................. TTGAGCCTGAGCGTCTGGTCGAGCGCCTTGATT 25635 33 100.0 35 ................................. GCCAAAGGCCTCATGAGCGGGTTCGATTCGGACGT 25567 33 100.0 32 ................................. GTCGCCTATGGCGCGTGGCAGACGTTCCAGAT 25502 33 100.0 34 ................................. CTGTTTTATGATATACGCAACATATTGCACTCTA 25435 33 100.0 34 ................................. TCCCGTCGGCCGGCGCAGTGGTGCCGGCGCGTGT 25368 33 100.0 35 ................................. TGGACGGGTGAGGGAACGCCGGAAACTATCAATCT 25300 33 100.0 34 ................................. CTCGACGGCAGCCAGGAGATCAACACCACGACCA 25233 33 100.0 34 ................................. CAAGGGTTTGATGTGTTCTTGGAGGTTCTTCAAC 25166 33 100.0 33 ................................. CACGGAATCACCCAATGGGCCGCATTGTATTTC 25100 33 100.0 33 ................................. GGATTCGGACGCGGACAAATACGATCTGCTCGT 25034 33 100.0 34 ................................. TCCTGCTCGACCGTGCTCGCGCCACCGGCGAGCA 24967 33 100.0 34 ................................. TTGATGATTTGCAGCGCCGTGGCCGTCGTGACCG 24900 33 97.0 34 .....................A........... CAATGAGTATGAAATATTGAACGGTTATGGTTCG 24833 33 100.0 35 ................................. CACTGCCGGGACGAAGCCACCCGTAAAAACCCAGC 24765 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 36 33 99.9 34 GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : TGCCCGCCGCACGCCCGCCATACCA # Right flank : AATAGAGCTTGAACTGCTTGCAAAGATGCAGTCGAATCGCGGAAGATGATGGGCGGTTACCCTGATAAGGGGAAAGGCGGTGACATGCACACAACGTTGGATTTGAGCCAATACAATGATGTGACGGCATATGCTGATGCAGTACATCGTCCGGTGGTGCATGTGGATTATCTGCCAACTCCGCAAACTGTCTGTCGCACGCCGTGTGCGTGAGGCGGTGGATGACCGGCACCTGAGTATGGAGCAGCTGGCGAAGGATGCGCATGTCAGCATCCAGGCTGTGTACTCGCTGCGCGATAGTGGTTTGGTGAGTCTGCGCGAGGTTCGCCGTGTGTTTGCAGTACTGGGCATTCGTGTGCATGCCTACCCAGTGGAAATGGTTCCGTTGTCTCTATGAGTGATGTGCTGCATACATGAATGGGCGATTGACATCATGTGGGTGTAATCACTCTTGGCGGGAAAGGCGTGGTCGATTTTGAGTATGATCTGATCTCCCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //