Array 1 45022-43732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGGK01000003.1 Streptococcus agalactiae strain DK-NI-008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45021 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 44955 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 44889 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 44823 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 44757 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 44691 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 44625 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 44559 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44493 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 44427 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 44361 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44295 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44229 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44163 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44097 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44031 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 43965 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 43899 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 43833 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 43913-44603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CGGK01000005.1 Streptococcus agalactiae strain DK-NI-008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43913 32 100.0 33 ................................ CAACTATCAATGAAGAATCAATCGTTATTGCAC 43978 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 44044 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 44111 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 44177 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 44243 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 44309 32 100.0 34 ................................ GTCGTAAAGACGTAGCATATCACTAATTAGATCA 44375 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 44442 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 44508 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 44573 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.0 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //