Array 1 920065-920641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC88 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 920065 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 920126 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 920187 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 920248 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 920309 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 920370 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 920431 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 920492 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 920553 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 920614 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 936778-938517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC88 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 936778 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 936839 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 936900 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 936961 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 937022 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 937083 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 937144 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 937206 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 937267 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 937328 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 937389 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 937450 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 937511 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 937572 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 937633 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 937694 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 937755 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 937816 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 937877 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 937938 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 937999 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 938060 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 938121 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 938182 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 938243 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 938304 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 938365 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 938426 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 938488 29 86.2 0 TAA.........T................ | A [938512] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //