Array 1 216886-214111 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUT02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0189 NODE_2_length_702003_cov_40.422593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216885 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 216824 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 216763 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 216702 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 216641 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 216580 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 216519 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 216458 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 216397 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 216336 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 216275 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 216214 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 216153 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 216092 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 216031 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 215970 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 215909 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 215848 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 215787 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 215726 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 215665 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 215604 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 215543 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 215482 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 215421 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 215360 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 215299 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 215238 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 215177 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 215116 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 215055 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214994 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214933 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 214872 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 214811 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 214750 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 214689 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 214628 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 214567 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 214506 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 214445 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 214384 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 214323 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 214262 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 214201 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 214140 29 96.6 0 ............T................ | A [214113] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234276-233637 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUT02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0189 NODE_2_length_702003_cov_40.422593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234275 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 234214 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 234153 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 234092 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 234030 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 233969 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 233908 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 233847 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 233786 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 233725 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 233664 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //