Array 1 85192-86182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJT01000036.1 Serratia marcescens strain 370_SMAR 327_261020_7561034_167+,...,177_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85192 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 85252 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 85312 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 85372 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 85432 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 85492 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 85552 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 85612 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 85672 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 85732 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 85792 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 85852 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 85912 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 85972 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 86032 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 86092 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 86152 28 96.4 0 ....................A....... | A,A,G [86172,86175,86178] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95006-96512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJT01000036.1 Serratia marcescens strain 370_SMAR 327_261020_7561034_167+,...,177_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95006 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 95066 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 95126 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 95186 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 95246 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 95306 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 95366 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 95426 28 100.0 12 ............................ CACATCGCCCGC Deletion [95466] 95466 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 95526 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 95586 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 95646 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 95706 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 95766 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 95826 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 95886 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 95946 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 96006 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 96066 28 100.0 32 ............................ GTTATATGAGAGGTTTCCGCCGATTGTTACGC 96126 28 100.0 32 ............................ CACGAATCAGGAAAATGCACGATTGCACCGGC 96186 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 96246 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 96306 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 96366 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 96426 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 96486 27 85.7 0 .............C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GATGCGCTGACGGCGCTGGGGGAATTCGACTGGCTCAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //