Array 1 3532-5452 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOA01000017.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45791 45791_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3532 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 3593 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 3654 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 3715 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 3776 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 3837 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 3898 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 3959 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 4020 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 4081 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 4142 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 4203 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 4264 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 4325 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 4386 28 93.1 32 .....-......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT 4446 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 4507 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 4568 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 4629 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 4691 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 4752 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 4813 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 4874 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 4935 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 4996 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 5058 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 5119 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 5180 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 5241 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 5302 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 5363 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 5424 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //