Array 1 363682-362205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST-07 NODE_1_length_575531_cov_5.234102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 363681 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 363620 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 363558 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 363497 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 363436 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 363375 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 363314 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 363253 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 363192 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 363131 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 363070 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 363009 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 362948 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 362886 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 362783 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 362722 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 362661 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 362600 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 362539 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 362478 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 362417 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 362356 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 362295 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 362234 29 96.6 0 A............................ | A [362207] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 381429-379814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST-07 NODE_1_length_575531_cov_5.234102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 381428 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 381367 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 381306 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 381245 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 381184 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 381123 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 381062 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 381001 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 380940 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 380879 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 380818 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 380757 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 380696 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 380635 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 380574 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 380513 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 380452 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 380391 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 380329 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 380268 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 380207 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 380146 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 380085 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 380024 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 379963 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 379902 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 379841 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //