Array 1 61912-61701 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCJ01000117.1 Lactiplantibacillus pentosus strain IG10 NODE_284_length_88685_cov_101.261238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61911 28 100.0 33 ............................ TAAGTTATTTACTGGCGCAGCCCTCGCGACTAC 61850 28 100.0 33 ............................ CGGTTAATTTATATTCCGCAGTCCACGTTAGAT 61789 28 100.0 33 ............................ TACTATGGTTTTGAAAAGGCCACACCGTATGAC 61728 28 82.1 0 ..........C....G..A.A...T... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTACTCCCCGTGTATACGGGGGTGATCC # Left flank : GCTTTCGACTTACCGCCAATCCCACCCATTCAATTATCGATCCTGAGCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGACTCGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTTGAACCTGATACAATTCACAAGTTAGCATTCGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAAATAGTGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGCGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAGGCACAATGATTAGGATAGGCTCGAGTTGGTGAGTCGTGGGTACGATATGATGCTGACTGTGTTAGAAACCAAGTTAACTAAAAACTGCCATGTGGTGTTTTCAGAAAGGCTTAGAGACGGGATTTATTAAGT # Right flank : TGTTTTACGCCCAAGGAAGTGATGAATCGGTTTGTATTCCTCACGCATGCAATGATGATCCAATAATACCGTATCCCACACTGATGAGGCCACACATCATAACGCAGGCCAATTTTCACATTCATCACAGCCTAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGAACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATTGTTTTAACGGCTGGGATCAGTGTTGTAACGAGGGCGAGTGCGTTGACTTGCCAGTAGATCAACATGTATAGCGGCATGAAAATCAAGTATTTGAATTTACGACCACGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACGCCGGCAAACATCTCGAAAGTCACAAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCGGTGAAGAAGAAGGTGACCAGTGAAATTAAGAAAATCAGTGT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 73082-73356 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCJ01000117.1 Lactiplantibacillus pentosus strain IG10 NODE_284_length_88685_cov_101.261238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73082 29 100.0 33 ............................. TTTCGCCATATTGTTGATTCAGCGACTCTCATT 73144 29 100.0 32 ............................. AGACTCAATCTCAATAGCGGGATGTTTATCTG 73205 29 100.0 32 ............................. TCTCTCGCGGGCAGGAACAGTATTTTCGTAAA 73266 29 100.0 32 ............................. TCTGAATGCTCTGCTCGGTTTGGATAAATTTT 73327 29 82.8 0 ..T..T.....A..A.....A........ | T [73352] ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : GCTATATTGGACTGAATACAGTATTCATTGGCTGTTTTGCTCATATTACTTAGATGCAATCATTTTTTAGCAACGATATTGCTTGGCATTCAGGTGCCCCCAATCTCTCTTCAGAAATTACCAAAGGAACATCCGCACAGTAATAGACATTCCCCAAGTTACTACCCCGTCATACTTTCGGAATCACTACACCTTTGCTTGACTGCATTCACTTCAAGTTACACCGTCCAGACACTACAGCCTACCTTAACGAGCAACATTATATGATTGATTAGATGCTATTATTATTTTGCGGCATATGACGTCTCACATGGCGATTGTCAAATTTACTATCTAGACACGCCATTTTTCACTTTGTACTTTTACTACTGCGTCCTGATGGTAAACTATTGATTTTATTTGGATCATACCTTATAGTCAAAGCACTAACTATTTGACAAGTTGACCCTAAACAGTCATTTTCATATTTTAGATTGTTGATTTACCGGCATTTGTTTAGT # Right flank : TAAACTCAATGGTTCCTCAACGACTGCCACGTTCTCCGCACATGTAGTATTCCACCCGAGCCAGTGCCATTGTTCAGTACCAAATTCATTGTTCAAAAAAAACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGTT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65867-64782 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCJ01000006.1 Lactiplantibacillus pentosus strain IG10 NODE_6_length_164494_cov_178.863663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65866 36 100.0 30 .................................... TTCGTTCATTTCTTTTTTAGCAGATTTGCT 65800 36 100.0 30 .................................... GAGTTGATTGGGCTAAGTACCAAGGTGTTA 65734 36 100.0 30 .................................... TCATGATAAATTGCGTTTGTGACACTGGGT 65668 36 100.0 30 .................................... GCGTTTTATCGCTCATATCCATTGTTAAAT 65602 36 100.0 30 .................................... GCAGACTAAAATGAATCTCCAGCATGTGAC 65536 36 100.0 30 .................................... CGCTAGCATCTACCTTGCGTTGATATAGCT 65470 36 100.0 30 .................................... GGTACAATCTTGGGATTTCACTGATGATTC 65404 36 100.0 30 .................................... TGATTCAGGCTAACGAGTATAGCCTGCTAT 65338 36 100.0 30 .................................... GCCCGATTCTCACGCCATGTTGTTGCAGTT 65272 36 100.0 30 .................................... CGCGCCCGTCGTTCCTGCCTTAATTCATCT 65206 36 100.0 30 .................................... CTTTGAAGACGGATGCCGGAACATGACGCT 65140 36 100.0 30 .................................... TGCCAAGTTACCCGATAAGTTTCTGGTTGA 65074 36 100.0 30 .................................... GCCTTGTACAAAGGCAATTACCTTGTTTTC 65008 36 100.0 28 .................................... GATTTTACTGGGGGACGTGGGGAGGAAG 64944 36 97.2 30 ...................C................ CGCGTCTATCGCGTGGTTGTTCGCGTCTTT 64878 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 64817 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 97.9 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGACTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAACTAGGACTCAAGCAATGCCCTGTGATGACCAATGTCAGCCATTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : AACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATAATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //