Array 1 931138-932751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051394.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM 22448 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 931138 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 931199 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 931260 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 931321 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 931382 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 931443 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 931504 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 931565 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 931626 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 931687 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 931748 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 931809 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 931870 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 931931 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 931992 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 932053 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 932114 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 932175 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 932236 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 932297 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 932358 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 932419 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 932480 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 932541 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 932602 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 932663 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 932724 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 949066-949583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051394.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM 22448 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 949066 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 949127 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 949188 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 949249 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 949310 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 949371 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 949432 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 949493 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 949554 29 93.1 0 ............TC............... | A [949581] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //