Array 1 481356-479743 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXWZ01000003.1 Brevibacterium ihuae strain CV3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 481355 36 100.0 37 .................................... GCGACGGGTGACCGTCCACTAGACCGACCCGCACCGT 481282 36 100.0 35 .................................... GGGTCCGCGGTGGCCGGGATTCCCGTGGCGTCGAC 481211 36 100.0 34 .................................... CGCGTCGCGCCACGGTAGGCGCATTTCGGCCCAT 481141 36 100.0 37 .................................... CTGCCGCCGAGCAGGCGATCACCCGACTCACCGTCCA 481068 36 100.0 35 .................................... CCCGACAGCGGCCTGGGGGGCGAGGATATGATCCT 480997 36 97.2 38 ............C....................... GGCAACGTCATCGTGCGTGACGCGCTGGCGATGGAGGG 480923 36 100.0 38 .................................... GAAGCGAAGTGGAACTGCCCTCTACCCGAATTGGCGTA 480849 36 97.2 36 ................T................... GTGTGGCATCACGCCCTCGGCCTTCACCCGCACCCA 480777 36 100.0 38 .................................... TTGGAATCGTTCGTCACGAGCGCGAACTGCGAGAAGTC 480703 36 100.0 38 .................................... CTGGATCGAAGACCTGACGGTGCGCGGCGACGTGCCCA 480629 36 100.0 36 .................................... GTTCCTCGCGATGGGCGACCCCAGCCCGTTCGACCT 480557 36 100.0 33 .................................... CGGTGGAATGAAAGGGTTGGTTGTCATTTCGCG 480488 36 100.0 36 .................................... CACGATGTCGGCGGGCACAGCGGGCAGGCCGTGGGT 480416 36 100.0 36 .................................... CCGGGGCTTCCCCTGCGACTCCTTCACATACCTGCC 480344 36 100.0 38 .................................... TCGGTTCGCCTCCGCTCGATCTCCGCGCTGATGCCCCG 480270 36 100.0 35 .................................... ATACCCCGCAGCGACCCCGACTTGAACCGATCCCA 480199 36 100.0 37 .................................... GCACATCCGTGACGTCCGGGGCCACGTCCTCCCACGT 480126 36 100.0 36 .................................... CCATCAGGCGCGCCTCGAAATCCTCCATCGTTGCCA 480054 36 100.0 36 .................................... GGCACAGCCGACGGAGACCTGCGAGGTGATGTCGAT 479982 36 100.0 25 .................................... CGGCCTCGACGCCGACGGCATCGAA Deletion [479922] 479921 36 75.0 36 AT..G.T.C.CCC.C..................... GGGGTGCGGGGTGGGGTTTCCGTGTCATTCCGTGGA 479849 36 100.0 35 .................................... GGGCCGGCCACTGGATCGGCGGGAGGCGCGGTCAG 479778 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 23 36 98.7 36 GCCTCAACGAAGGGGCGGTTCCAGAGGAACCGCCGG # Left flank : CCAGACAAGCCCCGCAGCAAGTGGCACAACCCCACGCTCGGGTACGCATTCATCCACACCGTCATCGACGACCACTCCCGCGTTGCCTACACCGAGGTCCACGACGACGAAACTGCCATCACTGCAGTCGCCGTCCTGCGCCGGGCGGTCGGCTGGTTCGCCGACCGCGGCGTCACCATCGAGCGCGTCCTGTCGGACAACGGCGGGGCGTACCGCTCGTTCCTGTGGCGCGACGCCTGCGAGGAACTATCGATCGCACCGAAGCGGACTCGCCCGTACCGGCCGCAGACCAACGGGAAAGTCGAGAGATTCCACCGCACCATGGCCGAAGGGTGGGCCTACGCCCGCTGCTACCGCAGTGAGCAGGAACGCCGCGACGCCCTGCAGTCCTGGCTGCACCAGTACAACCAGCATCGGCCGCACACGGCCTGCGGCAACCAGCCGCCCTTCTCGCGATTAACCAACGTCTCCGGTCAGTACATCTAGTTGTCTGGTTGTCC # Right flank : AGCGAACCAAATTCATCATATCTGACCTGCGCTGACGAGCCCCTCCGCGAGCACTGCACGGAATCTGCTCGGTGGCATGGTCTCCTCTTCGAGCTGTATCAGCGAAGTTGCGTCTGACCAGCAAGAATGCGATTCGAGAGCTCAGCGGCGTGTCGTGCTGCACCGCAGTGCTCGCAGGCACCCCGAGGCATGAACCCATGTACGTCGGATCGCCGAGCAGTATCAGCAGCTAGAGAATGATTGAGGTGTCATCGGTGATGGTCCTCACTGCGCCGATGTATGAGAAGACAGAATCATTGAGCGATCGTCTCAGTCCCAGATCGCAGAAGAGCACGGAGTCCTCCTCCGCGTCGATGATCGAACTGACCTCAGATCGCAATCGAAGCAACTTCGCCGGTGCGACATCGACGACGAACACGCTGTACTGGATCCGATCGCCGTATCGGCTCAGTGCTTTCGCCAGCCGGGAACGCCTCCGGTCGTCGGGCACGTCGTAAGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGGCGGTTCCAGAGGAACCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 483985-484954 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXWZ01000003.1 Brevibacterium ihuae strain CV3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 483985 36 100.0 37 .................................... CCGATCGTGTGGTGGCAGATGTACAGGGAGATGCCGA 484058 36 97.2 37 ...................T................ ACCGTCTGCTCGGAGCTCACGGCGCGGACGATGTGCG 484131 36 100.0 38 .................................... GAGGAGGTGACGCTCGATGCGCGCGACTAGACGCCTAC 484205 36 100.0 38 .................................... GCTGGCACCGCACCGCTCATCGACCTCGGAGACTTCAC 484279 36 100.0 37 .................................... ATCGAACACCAACTCCCTATGATCCGAGACGACCAGC 484352 36 100.0 39 .................................... CCGATGACTAGCGTCGCCTTGGACATGCGCTCGCGTCCG 484427 36 100.0 37 .................................... GCCGTCATCGTAGAGCCTCCCGGCGTGAATGCGATCC 484500 36 100.0 36 .................................... GGCAACCGCATCGTCGCCGGCAAAGACTACTGGATC 484572 36 100.0 37 .................................... AACTTCCAGTCGTCCATCTCCGTCCTGTCGACGTTCC 484645 36 100.0 39 .................................... GCCCTCTACACCGCGGTGATCTGGCACGTCGCATCCTGG 484720 36 97.2 39 ..................................T. GGCATCGACTTGTGCACGCTGGCGGCCCGGGCGACGCGC 484795 36 83.3 35 .......A......AT.G............A.G... ACCGCGAAGGCCGAGGCGACCCGTGCGAAGTACCT 484866 36 77.8 15 ..A...CC.........G.......CC....TG... TTGACACTCGCGCAC AAA [484894] Deletion [484920] 484920 35 72.2 0 ....T.....TC.....GT..-.......GA.C..T | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 94.8 36 CCGGCGGTTCCTCTGGAACCGCCCCTTCGTTGAGGC # Left flank : GTCGATCCGATTGGACTGGTCGCCGTCCGCGGGCACACCTACCTGCTGGCGACGAGGTCTGGAGACGATCGGACCTACCGTCTGTCTCGGATGCTCAGCGCCGAAGTGCTCCCCGAACCGGCGCAACGCCCTGCGCAGGTCGACCTCGACCGCATCTGGGCCGAGCGCACCGCACAGTTCCTCTCCGAGAACCACATCCCCGTCGTCATCCGCATCAAGACGTCACGTCGTGAGGAGCTGCTGGAGAACGCCCGAGCAGTCCGCGCCGAGGAACCGGAGCCGGATGATTGGGTCCGGCTCGACGTGACCTTCGAAGACCTGCGCCACGCGGTATGGGCGGTGTGGCGCCTTGGCACGGACGCCGACGTACTCGCGCCAGAATCCGTCCGCGATGCGCTGTACGTGCGTGCCCAGGCGTTGGCAGCACGTTATCGATCCTGACGATCCGTACCGACTAACGTATCCGGTCAGTACAACTAGAAGGAGACCACTATGACCAC # Right flank : TAAGTCGGCCTTCACTAAGGACCGCCGCGACCCTCAGACAGGTCCGTTGTCCGCCGCGAATCCTCGGCTGGCCCCATGAGCATTATTCACCAGTACCGAGGCGGCAGCTTCGAAGGGATGGAACTCCGGACCGTTGATACTTCCGCCACTCTCTATCGTGTGACGGAGGACCGGGAGCTGTAAGAACGGAACGACGAACTTTCCACTCCCGGTATCCTCGTCTGCGACTTCGTGTACCTCGCCGAGTAGGAACGCCGCCACGAGCAGGCACCACCACAGCTCGAGATCAGCCCCACAGCTCCGGGCAGACCACGGTCGGTGACCTTATGGAATGCCTCAACGCATTCCTCAATGCCGGGTACGCAGAGGACGCAACCATTCTCATTCAGTCCACCACGACAGGGAAACTGAAGCGCGTCGTGACGACCAAGGAGAGACGCGACTCGACACGATGGCCCATCAGAATTCGCTACGAACGCATGAGGGGAAGGTGTCACTCA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGCGGTTCCTCTGGAACCGCCCCTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //