Array 1 811645-811794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 811645 29 100.0 31 ............................. AGCGGGGAGGCGAACGGGCCGACGATGGTGC 811705 29 89.7 32 ..................A..GC...... TGGCCGATCAACTGCGCGAACCTGGCGAGCGC 811766 29 79.3 0 .............CC.TA....C...C.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 ATCGGCCCCGCGCATGCGGGGATGGCTCC # Left flank : CAGGCGCCGAACTCGGCAATGACAGCCGACCGAGCATCCCGATCTACGGGGTGCCGCTGGACGGCTCGCCCGGCGTGCTGGCGATTCCCGACACCGACGGCGGCGAGCTGGACGGCGACGACGTCTGGGACCGCGCGATGGGTCCGATGCAGTTCCTGCCCGAGACCTGGGAGCTGTTCGGCCGCGATGCCGACGGGGACGGCGTCGCCGACCCGCAGCGGCTCGACGACGCCGCGCTCTCGGCGGCCACCTACCTCTGTGCCGCGGATCGCGACCTGACCAGTGGGCCGGGCTGGTGGTCGGCGGTGTTCTCCTACAACAACTCGGTGGACTACGGCCAGCGGGTCTTCGGCCTGGCCGAGACCTACGCGGGCTACGTCCCCGAGGAGCCGTGACGGGCGTGCTCCGGTCGCCCTCTCGGCGATCCGGCCGGGAGTCGTGACCTGGAGCACGTGGTCGATACTGGCCGTCACGGCACAGGAACATGCAGGTCAGGAAGT # Right flank : CAGGATGGTGATGCCGTCGAGCACGGCGAAGGCATCGGCAACCCACACTCGGGCGGCTCACGGCGGCTGACCGCCCTTCGTCGTTGATCACCTCTTCGTTCGTACGACGAGGGGCTCTGGCCGTCAAGGGACTCATAAGCCCCTGGCCGAACCGGCCCTCTTCCTACGAAACGGCCTGCTGACAGCGCCGCACCGCCGCTGCCACCCCCGCACGCGGCGGGGGTGACTCGGCGGCGTCTCGACTCGGTGTGTCGTGCGGTGAGGCAGGATCCGCTCCAGTGCAGGCGGCCTGTCGACCGCCGTCGAGGAGCGTGCCCGCCGACCTGGCGCTCAGCGGTCCTGGAGGGCCACTCTGGCGCTGACCTCGCCCAGGGCGTCCTGATACTCCGGCGTCGGGTTCATCACGGCCGCCATCCGGATCTGCGCCAGTGCCTCGGTGAGTCTGCCCTGCCGTTGCAGGGTGCGGCCGAGGGCGAGGCGGGCGTAGTGATCGGCGGGAT # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCATGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 951797-952066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 951797 28 100.0 33 ............................ GCCCGGCAGCCCGGCCCGGCCGAACAGCTCGCC 951858 28 100.0 33 ............................ CCGGCCCATCTCGACACCGACGCCGCGAACGGC 951919 28 100.0 33 ............................ GGCCACGCCTGCCGCGCCCGCCACTTCCGAGGA 951980 26 92.9 33 .............--............. GCTCACGCGGCAGCGCGAGACGCTGGCGCGGCG 952039 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 ATCGGCCCCGCACACGCGGGGATGGACC # Left flank : TGCCCCGGTTGCGGTGTCGGTGCTCGCCGATCCGGTCGAGGTCGATCGAGTGCTGGAGAACCTGGTGGCCAACGCGGTGCGCCATGCCAGGCTGCTGGTCCGGGTGACCGTCCTGCCCTTCGGGCGCTTCGGCAGGCTGCTGGTGGACGACGACGGGCCGGGCATCGAGGCCGAGCACCGCAGCCAGGTGTTCGATCGCTTCTACCGCCTGGAGGGCGACCGGGCGCGGGAGACCGGCGGGACGGGCCTCGGCCTGGCGCTGGTGTCCGAGGCCGTGAGCAGACGCGGCGGATCGGCCTCGGTGCACACCGCGCCAGAGGGCGGCGCCCGCTTCCAGGTGACCTGGCCCACGGCCATCTGATGAGCCGGGCGCCCGTATCGAGCGGGCAGGGGGAGCGCCGTCGCGGTCGCCGGGACGGCGCGAGACTCTGCGATCAAGTGACGTGGATCACGTGGTAGAGAATGACTTCCGCGTCTGACGAACCTGCACGTCAGCAAGT # Right flank : CCGACGCGGCCTACGTCCCGCGCTACGTTGGCCCGTCGGCCCAGCAGCACCAACACGCACGGCTGAGCCCCACGGCACGGGCCTGTGCCCGCCTGGGAGCCATCCCGGCCGCACTCGGGTCCTCGCCGTGCGCCACGGCACGGTGGCGGCCAGGGGGCGGGCAGGCCGTACCGGGCCGGGCGCCCCCATCCGAGGCGCGGCGGTGGTGTAAGGATCGCGGGGTGCCGTTGCTGCGAACCTCCACGCTGATCGAGGCCGAGCCGCCCACCGTCGCCGCCGCCCTGCGGATGAATCTCGAGGCGGCACGCACCGAGGCCGCCGGGGTGCGCATCGAGACGGCGGGCGGGCGTGCCCTGCTGGGTGAGGGCGACCTGCTGAGCTTCGACGTCCCCACCTGGCTGGGGGCCCGCGTGCCGGTGCGGACCAGGCTGACCACGGTGCGGCCGACCGAGCTGCGGGCCGAGGCGGTGCCCGGGTCGCGGTGGCAGCTCGACCATCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 2205799-2206189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2205799 28 100.0 33 ............................ GTTTGTCCAGCGTGCGCTGCCGGCTGAGCGCGA 2205860 28 100.0 33 ............................ GCTGACTGACCTACCTGTCAGCGAATTGATTCC 2205921 28 100.0 33 ............................ GCTAGGTAACTACCTCTATGTGATCACCCGTGA 2205982 28 100.0 33 ............................ GTCATCTCTAGGACCAGGCGGTCGAAGAGCTGG 2206043 28 100.0 32 ............................ GGACGTGCCGGGGGACGTGCCGTTTCCCCAGG 2206103 27 85.7 32 ....G...T.....A..-.......... AGTGCGCCGTCGTCGGTTTCGACGACGTGGAC 2206162 28 92.9 0 ........T.....A............. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 33 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : CGGGGCCGGACAGTCGGTGCTCGTCGGCTTCGGACTCTCCGGCTGGACGGCGCTGGCAGTGCTGGTCGCCGTGCTCGGCATCCCCGCCGTGGTGATCCTGCGCGGGGATCAGGGGGAGCGCTGAGGGGCGGCCGGCGTCTCTCTCTGCGCCCGTGCGCTGTGAGGTTCGCTGACTGACCGCTTCCGCGCCACCGCCGCACGCTCGTCGCCGCCCGCGCGTCGCACCGCAGGAGACCGGCTGCCGCTGTCCCGTCGCCGGGTGGTCCGTGGGCCGCCGAACCCGGCACGCCATCGCGCCGGGCAGGGCTGCCCGGCAGGCCAGCTCAGACGTCGTGCGCGGCCGAATACTCGCGGCCCAGATCCCATCCGATGTCGGCCACACGGCTGCCTCGGCGGAGGGCTACGCAACGCTGAAGTATGGTGACCCCATGTGCTCGTCCCCTGCCGCAGAAGTGCATCACAAAGGGATAACGCGCTTCTAAAGGCCCAGTTCGCGAAGG # Right flank : CGGTGATCTCACCCGCCCCATCCCACACCCCTCGGCAGCCCGCCGCCCGGCGGACGTGCCCCGATACAGTGCACCCCGTGACTTTCACCCTGCTTCCCGCCGTCGACGTCGCAGCCGGTCAGGCAGTCCGCCTGGTCCAGGGCGAGGCGGGCACCGAGACCATGTACGGCTCGCCGCTGGACGCGGCCCTTGCCTGGCAGCGCGACGGTGCCGAGTGGGTCCATCTGGTCGACCTCGACGCCGCGTTCGGTCGGGGCACCAATCGGGAGCTGCTCGCGGAGGTCGTCGGCCGCCTGGATGTGAAGGTCGAGCTGTCGGGGGGCATCCGCGACGACGAGTCGTTGGCGGCGGCCCTGGCCACCGGATGCAGCCGGGTGAACCTGGGCACGGCGGCGCTGGAGGACCCCGTCTGGTGCGCGAAGGTCGTCGCGGAGCACGGGGACGCGGTCGCCGTCGGGCTCGACGTCCGCATCACCGAGCAGGGGCATCGCCTCGCCGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2223831-2224100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2223831 28 100.0 33 ............................ GTATCTGAACTGGCCCACGGCGGCCCTGGATGC 2223892 28 100.0 32 ............................ GCCCCCCGCACCCCGGAATCGGGGGTGCGGGG 2223952 28 100.0 33 ............................ GATCCTGGATCGCCTCATGGCGGCGGACTCGTC 2224013 28 100.0 33 ............................ GCGATGGGCGTGGTCATCAATTGAGAAGACCGG 2224074 27 78.6 0 ...........CC.A..A.....-T... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTCCTCCCCGCGTAGGCGGGGGTGAGCC # Left flank : CGGGGCGGGCGACCGGCGAGACGCCGGCGGTGCGTCCTCTGAACGGGGTGCCTCGGGGCCGGATGCTTCGGACTCCTCGGGGTCCTCGGGGAGCCGTGCCGAGGTGAGCGTCTCCTCGACCGCCGATGCCGGGGTCTCTTCCGGCTCTTCGTCGTCTTCGTCCTCGTCGGACTCGGGTTCCGGGTCGGACGGCGGCGGTGGCGGCGGTGACTGAACCGGTCGGCTGACTGACTTGGGGACTGCCCGCCGCGCTCTTGCGCGGCGGGCAGTCTTGTTCATCGGGGGGATTCGCGGCGTTTGGAGCGGTCCGCTTCCGGGCGGCTGCGGAGCCGAGGTCTCTGGCGGGCCGCCGATGCCCGCTGCCGAGGTCGACCCCATGCGGCGGCACTCAGACGAGCGCTACTCGGCGCTGAGATATGGTGACGCCGTGTGCCCAGTCAAGGCTGCAAGAATAAATCACAAAAGGATAACGCCCTTCTGAAGCCCCAGGTCGCGAAGGG # Right flank : CGTACGCGCGAGCCGGATAACGGGACCTGCGTGCCCCGAGACGCCACGTCACTCACCGGGAGCAGCTCAGGGTAGAACGACCCTGATCACCGTCCCCCCGAGCAGAGCCGACCGCCCAGGGCGGCCAGCAGGCGCCCGAGGCCCGCCGGGATCTCGCCCACATTCCTCGCGCGACCGCCCTCGGAGCATCCGACCCGAGCGGGCAGAATGGACGCCGGACATGCGGTGTCCCCCGATCGGGGCGCGGCGAGGCAGAGGCACGGCCGAACGGAGGCACGGTGGAGGGCGCTGAGTTGCGCGGGATCGTCGCGATGGACGGGCCGTCGGGGACGGGGAAGTCCACCGTCTCGCGTCGGCTGGCCTTCGGCCTGCGGGCGCGCTACCTGGACACCGGCGCGATGTATCGGGCCGTGACGCTGGCGGTGCTGCGGTCGGGGACCGATCCGGCGGACGCCCCTTCGGTCGCCAGGGTCGCCGCCGAGGCACGGCTGAGTGTGGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGTAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2252364-2251623 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 2252363 28 82.1 194 .C..T......T.C.....C........ GTCGCGTGATCGCCTGACAGCGCCACGCGCGATTCGCCATCCGAATGCCCGCCGGTGCGCGACATATGACCTGCCGACCACGGCCGGAGCGACTCCGGCCGACGCCCAGGCACGGCGACCCCAGGTGCCCTCAGGAGGCCTCACCCCATGATCACAAAACAATAACGCCCTCCTAGAGGAGCAGGTCGGTAAGG C,A,G [2252338,2252341,2252355] 2252138 28 100.0 33 ............................ CCGGTGTGGTGACGACCCAGGCGTGGTCGGTGG 2252077 28 100.0 33 ............................ CCCGGTGCAGGTGGTCCAGGAGGTAGAGCAGGT 2252016 28 100.0 33 ............................ GACCCGCCCGACGAAGCTGCGCGCGCGTCGCGA 2251955 28 100.0 33 ............................ GGGCATACTCCTGCGCGGGTCCGGGCGTCGGGT 2251894 28 100.0 33 ............................ GATGTGCAGGACGCCCGTGCTGCTCGGCTCGCC 2251833 28 100.0 33 ............................ GTCGCGGATGCCGAGTCTGTCGCACGCGGTGAT 2251772 28 100.0 33 ............................ GGGGATCGGCGGCACGGCGAACAGCGCCCGAGT 2251711 28 100.0 33 ............................ GGCCAGGCCGGGTGCGCCTTCGGTGTGTCTGTG 2251650 28 89.3 0 .................C.....AC... | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 10 28 97.1 51 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : TCCACTGCTGGTGGAGCAGATCACCAGAGCACTGCCCGCCGCCGCGCCGCCGTCCGTCCCGGCAGGGCCTGCCGCCGAGGAAGCGGCGACATCATCCGAGCAGCAGACCGCCGACCTGAGCGGGGTCCGAGCCGAGGCGCACCGCGAACTGACCGTTCACCGAGGCACTGGAGGCGACGATGACTGAAGGTTTCCTAGGCGCCCTGGTGCGCGCGCTGGCCAGGAACACCCCCGCGTTCGATCCGCCGCGCGCGCAGCACTCCGACGGCAGGCCGGGCCTGCGCGCGGCGCTGGCCAGGAACTCGGCCGGACCTGGATCGTCCACTTCGGACGGCGGGCCGACGGATCTCGCGGGCCGCACCGACCGGAGTCGGATGCGAACCCGGCGGGAACGCGATTCCGCCGCCTCGGTCAGCGGCCTCCCGCGCGCGGCCGCGACCCGCGCGGGTCATGTCCCGGCGACGACGCGACCGAAGCCCGCCTGAGGCAGGCGAAGCTCA # Right flank : GTTACCGCTGCCCGTCCCGACTCGTCCGAATCCCGCCCGATCCGCAGGACGATCCTCGTCGGGCTCCGATTCGGACTCCAGGCCGTGCGCCGAGGGCGGGACTCCCACCAGGCTCCGAGTTCGACCGAAGGAGGCCGGCGGTCGGCGAATCCTATAGGATTTCGGGCCGCCTCAGCCTAGGGTGCAGGACGAAGGGTTGCCGTCGAGGCGGCTCTGGCGCACGGACGCGGGAGGCACGATGGCCGTCGGCACGGCAGAAACCGACCCCGGTCCCGCGACGACGACCGCGCCGCAGGGTCGCCGCAGGAACGTCCTGGTCGACGACGTCTACGAGACGATCAAGAACCTCATCATGGATCACGCGATCGCCCCCGGCGCCAGGGTCTCGATTGACGGGCTCGCCCGCACGCTTGCCGTCTCCCCCACCCCGGTCCGCGAGGCGCTGGCCCGGCTGGAGTCGGCCGAACTCCTCGTCAAGGAGCCGCTGCGCGGCTATCGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2484979-2485830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2484979 37 100.0 37 ..................................... GAGGACGTCCTCGCGGTAGGTGGCGAGGACGTCGATG 2485053 37 100.0 37 ..................................... CCCGACCGCCGGTGACCGCGCGGCCGAGATACTGGCC 2485127 37 100.0 38 ..................................... AGGTCGGCGATGCGGATCTCCACATGCGGATCGAGCAG 2485202 37 100.0 37 ..................................... GGCGGGATAGGACCGGGGTCGGCCGGTGCGGCGGCAG 2485276 37 100.0 37 ..................................... CGTGCCTTCTCCTCCTTGGCCGCAGCGCGGCGGGCGG 2485350 37 100.0 37 ..................................... CGTGCCTTCTCCTCCTTGGCCGCAGCGCGGCGGGCGG 2485424 37 100.0 37 ..................................... GCCCGCGTTGAGCGGTGCGGGCCGCGACTCCGCTCGG 2485498 37 100.0 38 ..................................... CGCAAGACCCGGTTCCGACCAGCGCAGCTCGCGGTCGG 2485573 37 97.3 39 ................A.................... CACCCCCGGCGACGCCTGCGATTGCCGCGAGCCGTGGGT 2485649 37 100.0 35 ..................................... TACCGGCGCGAGAAGGTGCGCCACGTCGCCGAGGA 2485721 37 100.0 37 ..................................... CTCGCTGGCTGGACGGCGCGGCACACGCCGAGGGCCG 2485795 36 94.6 0 ..............G..................-... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.3 37 GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : GAACTGCGTGCCACGCCCGAGCGGCTGCTCCCGGTGGAGTGGGCGCCGTCCTCCTCCTCGGTGTTCCTGGTGGCCATTCAGGTCGAGGCGCTCGATCGGCACCGGCTGCTCTCCGACGTCACGAAGATCCTCGCCGACGAGCGGGTCAACATCCTCTCGGCCTCGGTCACCACCACCAGGGACCGGGTGGCGGTCAGCCGCTTCTCCTTCGAGATGGGCGACCCGAAGCACCTCGGCCACGTGTTGAAGGCGGTCCGCAACATCGAGGGCGTCTACGACGTCTACCGGGTGACCTCCACCGCCTGAGGCCCGGAGTCCTCGGCGCGAGCTGCGCAGGCCGTCCGGCGCGTCAGCGGGAACTGCGGTGTGCCGCCCGAGCCGCTTGGGGAGGGGAGGCGTCGGGCGACACGCCGGGTCAGTCCGAAGCGTTTCTTGGGCGTGTCGGTCACGAGTCGGTAACCTGGGGTCGCTTGATCACGCAACACCCCTGGAAGTACAGG # Right flank : CGCCCGCCGCCGAGCGAGATCGCACCAACGCCGCCGAGCGACCCGCAGCCCGCCCACCCCGGCCCCTGCACACACCCGAACATGCAGACAGCCCCGGCCCGCCGTCAGCGGCGTCGACCGGGGCTGTCGTGGTCGTGCGGGGAGAGGATCAGCTCGCGATGCCGACGCTCTCGATGATGGTCTCGGTGTTCGGCGGACCGTCGCCTGCACCGGTGGCCTCGCCTGCCTCGGCGATCTCGTCGACCACGCCGAGTCCGGCCTCGTCGACGGTGCCGAAGACCGTGTACGACGGGGGAAGCTCGGAGTCGCCGTAGACGATGAAGAACTGCGAGCCGCTGGTGTCGGGGCCCGCGTTGGCCATGGCCAGCGTTCCCCGGCCGTAGGTCTCCTCGCCGGTCAGCTCGTCGGCGACGGCGTAGCCGGGGCCGCCGCTGCCGGTGCCCGTCGGGTCGCCGCACTGGAGGACCTCGAGGGAGCCCTCCGAGGTGACCAGCCGGTGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 7 3122732-3123582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 3122732 38 100.0 37 ...................................... ATCCGGGTGGCGCCCTCCTCCTGGTCCTCGTCGACGG 3122807 38 100.0 34 ...................................... CCCCACAGGTACACCCCCCCCCTGCACGGGTACG 3122879 38 100.0 36 ...................................... CACTCCTGGAAGGCGCGGCCGGCCTCTCGCTGGCCC 3122953 38 100.0 35 ...................................... TCCTTTCGTCGTGCCCCGGCCGGTCCGGCCGGGGC 3123026 38 100.0 35 ...................................... CGCTGCGACCACCAGCGCCGCCGGTGACGCTGGCC 3123099 38 100.0 36 ...................................... CAGCGGCTGTGACCGATCACCCCACCGGTGACCACA 3123173 38 97.4 39 C..................................... CTGGAGCACTGCCGCCACGTGGCTGGCGTAGAACTCGGG 3123250 38 100.0 36 ...................................... GAGATCCGCGCCGCCTCATCGAGGAGTAGGCCGACG 3123324 38 100.0 35 ...................................... TCGAGGATGCGGGGGTTGTACTCCCCCGGGTAGGG 3123397 38 100.0 36 ...................................... CCGACCTCGTGAAGGGCGGTGTCCCCGGAGTCCGTC 3123471 38 97.4 36 A..................................... CATCGCGTCCGTGCAGTTGCCGGATCTCGGAGTGCG 3123545 38 97.4 0 .....................T................ | ========== ====== ====== ====== ====================================== ======================================= ================== 12 38 99.4 36 GGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Left flank : GATGGCTGGCGACCTCACGTCACCCTCGCCTACTCCAACGTGAGCGGCCCCGCCGAACCGATCGCAGACCGTCTCGCCGCGCACGGTGCGCACATCGCGGAAGTCACCGTCTCGGCCCTGAGCCTCATCGAACTAAACCGTGATCACCGACAGTACGAATGGACCGACGTCGCGACCGTGGGTCTCACCGGATCACGCAGCGACATGGCCACTGAGTGACTGATGGGACTGAAAGACCCCGTCCGGTCCACTCTGGAGACTGACGCGACCTGCCGAGCTTGCCCGTTCGATGCTGCCGCTCTCGGTACTGTCCGATGACTTCCTACGTTCGCCAGCAGCGAGGGATGAAGGGCTGCTGATCCACTGGCCTTGTCGCTGGCCGCTTAGGGAGGGCAAGCGTCGGGCGACACGCCGTGTCACTCCGAACCGTCTGCCGGGCGTGTCGGTCAACATCCGATAACCTCACGACGTCTCGAACTGCAATGCCCCTGTACAAGCAG # Right flank : CACCTACTTCGACACCGCCACCGAACCCGTGCCCTGGGCCGATCAGAACAAGCCACGCTGTCGGCGTACGAGTCGCAATGCAGCGCCGCGCACGCCACCGAGTACACGACGACCATCGACATCCGTAAGCTCAGCGACGAGCCAGCGGTCGAGTCGGCGTCGGCACATCGAGATGATCGACTACACAGGGTGATGCATGTCAACCCGGCGGCGCCCTGATTTGCCGAGCTCAGCGCGCCCGGCGCTGTTAACGTGCGCTCGCACATCTGAGAATTCGGAGCGCGCCGCCATGAAGTACACCGTCTCGATCGAGATCGCTCTGCCGAGGGAGCGAGTGGTCCAGCTGCTGGCAGACCCGGCGCATCTGCCGGAGTGGCTGCGGGGCTTGGTGCTGCACGAGCCGCTCAGTGGCACACACGGGCAGGTCGGCACCACGTCGCGAGTCGTGATGCAGATGGGCAAGCAGAAGATGGAGTGCACCGAGACCATCACACGTCGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-20.70,-19.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 8 3133043-3134042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3133043 37 100.0 37 ..................................... CGAACACCCTGTCTAGTCCGCCGATCGGGTGAACCGA 3133117 37 100.0 37 ..................................... GGCGTAGAGCGGGTGGCCTTTGTAGTGCCGGGCCACG 3133191 37 100.0 36 ..................................... GGCGACGAGATCCGGGCGGTCCGCCAGATGCCCGGC 3133264 37 100.0 39 ..................................... CCGATGCGTCCGCAGAACGTCTCCGTCCACCCTGTACCG 3133340 37 100.0 38 ..................................... GGATGCGCGTCGCGGGGATCTCCACCCCAACAGCGCGG 3133415 37 100.0 36 ..................................... CCCTCGAAGGGGCGATGAGGCCGTAGATCAGTGGCG 3133488 37 100.0 36 ..................................... AAAATCTCCAGCATCTCGTAGTACTCGGTGCGTTTG 3133561 37 100.0 38 ..................................... CGGGGAATGGCTCGACGAAACCGGCGAGCCACTCCCAG 3133636 37 100.0 38 ..................................... GTCGGGCACAGGTGCTCCCTGGTTGGTGCTCGCCCCCG 3133711 37 100.0 37 ..................................... TGGTCGACACCTGCGATCGGTCGAGTAACAGAGAAGT 3133785 37 97.3 37 ..................A.................. AATCCCGGCCGGGGTGAGCTGTGGAGGCGGAGCCCCG 3133859 37 97.3 38 ................A.................... GGGGTGAAATCGCAGGGCCTGCCGCTCTACGGCCGCCT 3133934 37 97.3 35 ..........................G.......... GCGAGGAGCGGCCGGAAAACGGCGGCCGGGGCGAC 3134006 37 83.8 0 ...A...G........C.........C.....A.C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 98.3 37 GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Left flank : GCCCATCGTGCAGACCCGGCTGTTCGCTCGTCATCTGCGAGGCGACGAGCCCGCCTATACCCCGTGGATCGCGAGCTGACGATGGAACTGCTGGTCACCTACGACGTCGACACCACCACGCCGGACGGCGCTCGGCGCCTACGGCGCGTCGCGAAGGTGTGCGAGGCCTACGGGCTGCGGGTGCAGAAGTCGGTGTTCGAGATCGTGTGCTCCGACGTCGACTGGATGATCATGAAGAAGCGCCTGCTCGACGTGATCGACGGCGACCAGGACAGCATCCGGGTCTACCAGATGAACGTGGGGGCACTCGGCAAGGCTCAACACCTCGGCCGCTCGCCCGAGGCGCCGCATGGCGCACCGCTGATCTACTGAGTCCTGGCGCTTGAGGAAGATGAGCGTCGGGCGACACGCCGTGTCAGTCCGAAGTGCCTTTCGGGCGTGTCGGTCACCACTCGATAACCTCGAGGCGTTTGAGAAGGCAATACCCCTGTACAAGCAGG # Right flank : CTGCCGCACCTATGTCGGGTGAACGCAGGGGAGTCGTTGTGGCACCGACCCGCCGCCACCCGACCCCGGACCGGCACTCTCCCGGTCCAAAGACGGCAGGCGGTCGCGCACCCGCCACCTCCGCCTGTTCCGCAGGCAAGCCGGACGCCCGCCGGGAAGTCCGCTTCAGCCCCCGTCGCCGTCCCCATCGGGCTCCTCGGAAGCCCTCAGTATCTTGCTCATGCGCTGCATGACGTCGATCTGCGCCGGGTTGTAGAGATCGGTGATGGCCACGCCGAGCGTCTGTGCTGTGACGTACTTGCCGAGCGGCGTGTCCTGACTCACGTCCAGGAGTCCGGGATGCCGGGCGTCGAGGTCGCTGACGTGGGCGGCCAGTCGCTTGGCCAGCTCGTGGCGGGTCTGGTCGTCGGCATCGGGCGGCAGGTCGGTGAGGTCGTTGTCAGCGGGGTGCGGCTCGGTGGTTCTCAGCAGCTGAGCGTAGGTGTTGAGAGCCTCCCGGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 9 4231956-4231182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4231955 37 100.0 38 ..................................... AACAACACCGACGCGGCCATCCACCGCGTCGTGTCTCT 4231880 37 100.0 37 ..................................... TTGTGTTCGAGGTCGACCGTACTCACGTCTTACCCAT 4231806 37 100.0 37 ..................................... GGGTGTGGGCGCTCTGCATGTGGTCGTCGGGGTCGAG 4231732 37 100.0 38 ..................................... AGTGGCGCCGGGACGTCCTGCGCCCACTCGATGCGGGC 4231657 37 100.0 37 ..................................... CTCCAAGCGGCGCGGGCCGCCGCGGCGGCCGAGGGTG 4231583 37 100.0 35 ..................................... CTCGCGTCGGCGACGGCCCGCATCGGCGGCGTCGG 4231511 37 100.0 36 ..................................... CGCTGCGGCACCTCGCGGTGGGTGCGGTGATCACTG 4231438 37 100.0 36 ..................................... CCGGCCTGGAGGTCCAGCAGGTGTTGACGACCGGCA 4231365 37 100.0 35 ..................................... CGCGCCGCCGCGCAACAACGCGACGGCGACCTCGA 4231293 37 97.3 37 ..............T...................... GACGAACTGAGCCGGACGGCGTACCGCGACTATGTCT 4231219 36 86.5 0 ..............T...........C....G.-.C. | CA [4231191] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.5 37 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : CCGATGGCTCGGTTCGTCTGGCGGACCTTCGGCGCCGTCTTACGCAGGCTGGTGCGACGGTTCAACAGCAAGGAAGCAGCAGGCGGTAACCTCGCCGCGATCGCCCTGGGAACGGTCCGCCCGCCCGCCGGACGCTATTACGCGGCCGTCCGACGCGACGCGCTCACGTGGCTCGAACCCTCGGAACTCGCCCGCGACGAGGAGGCCCGGGACGCCCTGTGGCGGGACAGCGCTCCCTTGGTCGGCCTGCCTGCCTGAGAGCGCCGCCGATACTGGTCGCGAGCGGATCGGCGCGGATCGCCAGCGCCGTCCTTCGCCCTTTCGGTTCGAGCGTGTTGACGTCGAAACGCCCTCGGAGCGCGATGATCCCGCACCACTGAGCTTCGGGAAGGCAAGCGTCGTGCGACACGCCTGACCATTCCGAACCGTTTGCCGGGCGTGTTGATCACCACCAGGTAACCTTGAGGCGTTGAGGAAGGCAATACCCCTGCTGCGGCAGG # Right flank : TGCCTCGCTACCCCGCCGTAGCCAGCCCCGTCTGAAACGCGATCACGACGAGTTGTGCCCGGTCCCGCGCGTCCAGCTTCATCATCGCCCGGTTGACATGCGTCTTCGCCGTCAGCGGCGAGACGTGCAGGCGGGCGGCGATCTCGTCGTTGGACAGGCCCGTGGCCACCAGCCCCACGACCTCGCGCTCCCGATTCGTCAACGCCGACAGCCGCTCCGGCTGCGTCGGCTCCGCCACCTGCGGGCCGCTCAGGAACCGTTCGATCAGCCCTCGGGTGGCCTTCGGCGACAGCAGCGCCTCGCCTCGCGCCACCGTCCGGATCGCCGCCAGCAGCTCGCCAGGTCGCACGCCCTTGCCCAGAAACCCGCTCGCCCCGGCCCGCAGCGCCTCGAAGACGTACTCGTCGACCTCGAAGGTCGTCAGCACCAGCACCCGGACCCCGACAAGATCATCGTTCGCGATGATCTCCCGCGTCGCGGCGAGGCCGTCCAGCTCCGGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 10 4237254-4236991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 4237253 41 100.0 32 ......................................... CCGTCGAAGTCGGTGAGCGTCTTCGAGGCGGC 4237180 41 100.0 33 ......................................... GGTCCGCCCAGTAGTGCGTCGCGGCGGAGATCA 4237106 41 100.0 34 ......................................... GGCGATGTTGCCCAGGATCATCAGGCACCACGAG 4237031 41 95.1 0 A.....................................C.. | ========== ====== ====== ====== ========================================= ================================== ================== 4 41 98.8 33 GGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAACGCC # Left flank : AACGCTAGGTGTGACCCCGGACACCGTCAAGCGGCCGTTCGGTCGCCGCAAACTCGCCCGCCCAACCCAATTCGCCCGCCCGCACCGTCGGCGCGACGCACCGCCGTCTGCCGTATCGCGTCGGGCGATGCCGGGGTTCGGGGGCGGCGACGGTGGCGAACTGCGCACCCTGATCTGTGGGTGACGGGTTGGACTTAGCGGTGATCAGCGCGCGTGGTCTGTGCTCGATCCGGTGCTCTGCGACCTCCTTGCGATCCCGAGGGCGTGGTCACCATGGGACTGCCCGTGCTGGCGTGTGCAAGGGTGTCATCGTCGGCCGACCGCTTGTCCTGGGGCGCTGGGCTGTGGCTCTCTCGCTGGTATCGGTCATAGGCTCGGCCCGGTTAGGGAGGGCAAGCGTCGTGCGACACGCCTGATCCTTCCGAACCTGCCGACGGGCGTGTTGGTCTCTACCCGATAACCTTGCGATGCTGGGAGACATGACATCCCTGCTGAGGCAG # Right flank : ACCGGACTGCTACTGCGACGCATCTCGGAGGCCTGACGGACGTACGCAGCGCCCCCGCACCAGCGCGGTGCGGGGGCGCTGTCATTCGCGGGGTCAGTACTCCCATTCCCAGCCGTTCCCCGCAGGCCGGATTCCGAACATCGGATCGAACGTCACAACCCCGCTGGCATGCGCCGTGTCGAGCGTGATCCGTGCGTGATAGGTCGTGCCCGACCGCATCCCGCCGATGGGGAACTGGTCTGCGTCGTCCATACACGAGTAGGACTCGATCGACGCAGAGTCACCCTCACCCACGCCGTCTGCGGAGATGATGCCGAAATCGAACGGGGTGATGTTCAACGTCCCGGCCGTCTGGTGGACCTCGACGGTGATGTCCACGACCACGAAATGCCCGCGCGACGGAGGGCTCGCCCACTGCGAGGTACATCCCGGATCGACGGCGGTGCCGGTGACGGTGGCCGTAGCCGTCCCCTGACCGAGGTCGATGGGTTCGCCGATCT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAACGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-19.20,-20.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 11 4267246-4266178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4267245 37 97.3 38 ..............T...................... CGGTAATCGCGGGCATTACGCCCGGGTGCGGATCGCGG 4267170 37 100.0 37 ..................................... TGTCGTCGGCGGGGGTTGCCAACACGCCGGGGCTGGC 4267096 37 100.0 37 ..................................... CGGGATCTCCACGCCGTCGCCGGCGACGACCAGGCGG 4267022 37 100.0 37 ..................................... GAGGCGCACCGCGATCACCGCCAGCAGTTCGGCGGCG 4266948 37 100.0 38 ..................................... TGATCTGATCTGATCGCAGGCTGACGAAGCCCCGCCGG 4266873 37 100.0 37 ..................................... TGCCCAGACCGGCCCGCCTGGCGGCCGACGGGCTCGA 4266799 37 97.3 36 ..............T...................... GTCCACAGCCGTCACCAGGGCGAGCTGTCCGCACTG 4266726 37 97.3 36 ..............T...................... AAGGCCAGTCGGTCGCGCAGCCGTTGACGAGTGGCG 4266653 37 97.3 36 ..............T...................... CTTCTCGTGACCTCCTCCAGACCGACCGCGAGCTGC 4266580 37 97.3 35 ..............T...................... GACCGCGTGCCGACGGCTCGCGATCTGCGCGGGGA 4266508 37 94.6 34 .......T......T...................... CCCCACCGACACCGCCGACAACATCCCCGCGTGG 4266437 37 94.6 38 ..............T....T................. ACCGAACAGCAGCTGCGGGTGCTGGGCGGCCGAGACAG 4266362 37 100.0 38 ..................................... TGGCCGATCCACGAGGCGAAGCCCCTCGATCCAGGGCG 4266287 37 94.6 38 ..............T...A.................. TCCATCTTCGACAGCGTCGAATTACGTAGACGGATGAA 4266212 35 83.8 0 ...C..........T...........--....A...G | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 96.9 37 GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CCAGGACTGCCGCGATGGTGAGCGGGACCACCCGGACCGGCTCCTCCGGGGCGGGCGTCGGTGCGGCGCACGACGTCGGCGACCTCAGGAGCAGATCGGCGGTTCTCCCGGCGTTTCCGCCGGTGGGCTGGTCGGTGGTGGCGGACACGGGGCACTCCAGGACGAGAGTCGGCTGCGCGGACTATCCCGGGAGGCTAGGTCGTCACCGGTCGGCCGGGCAGGGTGTCTCACTGGATGGACGTCGCCGTGCCTGCCTGCTCGACGGGCAGACACATTCGTCCCGGCCGTCGTGAGCATGTGTCGGACCGGCCGTCTCGTAGAGTGGGCGGTCGGGCTTGTACCGCTCCGGCTGATCCGGTGACGCCAACCGTCGCCGAATCGCTTGGGGAGGGCAAGCGTCATGCGACACGCCTGGCGACTCCGAACTCAAATTCGGGCGTGTTGGTCACTGCTCGGTAACCTTGGCGCGTTGAGGAAGGCAATACCCCTGCTGCGGCAGG # Right flank : GCCGCTCATCAACCGCGACCCGTCGCGTTCAGGCGAGCACGGTCCACTGGCCTCTGGTGCGGTGGGTGAGCGTCCAGGCTCGCGTCTCGGCGACGGCGGCGGTCGCGGAGACGACGTGGTCACCGATCTGTCGGGCGATCTGCTGGTCGCCTGCCGTGAAGCGGACCGTGACTCGGGCTTCGCCCGCCACGACGTCCACTGCCGAGGCCTCGACGGTGGCGAACTCGGCTGCGGCCTCGGCGGCGGTCGGCACGACTCGCTCCGGTGCGACACCGGGTCGCAGCATCCCGATCGTCATCGTCACGCGGAAAGATGGCATGGCCCGGCAGAGTACGGCAGCCTCGCTCCCGTCCTGCCGCACGAGGTCTTCTCCGGCCGGGCGGCTTGGGCTCACCTTGTATTGCGCGGTGTGGTGACTCGATTCCTGGTCTGAGATCGGCAGCGCACCCGGCTCGCGGTGACCAGCCCGGTCATCGGCCGCACCTCGGAGCGTCCTCGTC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 12 4342575-4342786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4342575 29 93.1 32 .C............G.............. ACCATCGCGGAGCGGTCGTCGCAGGTCCGGGT 4342636 29 100.0 32 ............................. GGCAAGGACGCGCAGCTGTCGTGCAACCGTGC 4342697 29 96.6 32 ............................A CCGCCGAGGCTGATCTCCGACAGCAGAGTTGC 4342758 29 93.1 0 .....................A...C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTAAGCCCCGCGCAAGCGGGGGTGGTCCG # Left flank : GCGGCGCGGGACCGCTGCGACAACGGATGCGACGGCGGGTCGCGGGCGGCGGCCGGGTGCTGTTCGTCGGCGACGCGGCAGGCTATGTGGACGCGCTGACCGGTGAGGGCATCACCTTGGCCATGGCGGGCGCGGCGGCACTGGTGGACAGCCTGCGCCGGGATCGGCCGCAGGAGTACGAACGCGCCTGGCTGCGCGCGACCCGACGCCACCGGCTGCTGACGGAGTGTCTGGTGCTGGCCAGGGCGAACCCGCTCACCGCAGGCCGGATCGTCCCGGCCGCCGAGCGCCTGCCCTCGGTGTTCGGCGCCGTCGTCAACGCACTGGCGTGAGCGAGGTGGCGGGCCGTAGGCGCAGGGTCGAGCGGAACGTGACCGCAGTGTTGTCCACAGAGGACGAATCGATCGGTGCGTTCCCTGCACAGAAGTCAGGTCGCGAGTCCGCCTACCATGGAGCATCACAGATGAATAACGCCCGAGCTGCGCCGCAGGTGGCGAAGG # Right flank : GATGTCAGCCGGGATGGTGGGCAGTTCGTCGGGGTGGGCCGCACCAGGAGGCAGAGGACTTCGACCAACTCACTCCGGCAAGGTCAAGAGCCTTCGCAAGCCGGAACGCCCCGCCCGCCCGTCGGCGCCCCGGCGAAGCAGGTCTCCGGCACGCGGCCGAGATGGGCCGGACCACCAACGGACGGCGTCGGGCTTCTCTGCCCGGCCAGCCTGCCCCGGCGGTTCGGCGTTCACCAGCGCAGCAGCACGAGTTCCGCGCAGAAGCCGGGGCCCATCGCGAGCAGCAGGCCCGGTGTCCCGGCGGGCGGGCGGGGTTGGGCGAGGGTTCTTCGCAGCACGTCGAGGACCGAGGCCGAGGAGAGGTTGCCCAGGGCCGACAGCGACTCCCGGGTGTGCGCCAGCGCGGTGGCGGGCAGTGCGAGCGAATCGGTGACGGCGTCGATGACCTTCGGCCCGCCCGGATGGCAGATCCACGTCCCGACGTCCTCGGCGACCAGGCC # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 4998139-4997805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4998138 29 96.6 32 ....G........................ TCGTACTCGATCCCTTCGCGCTGCTCCGGCTT 4998077 29 93.1 32 ....G.......................G GATCAGCAGGTGCGCGTCCGCGAACCGGCGGT 4998016 29 100.0 32 ............................. GCTGCGCCAGCAGGGATGAGCTGACGGAACAT 4997955 29 93.1 32 ........................C...G TCGGCCTGGGTGGTCGAGGCGGTCAGCGTCTG 4997894 29 96.6 32 ............................A GACACCAAGCTCTCGAACCTTGATCGAGGGCA 4997833 29 89.7 0 ...C.................C......G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Left flank : CCTGCTGGCCGCCCGCCGCGCCCTGCGCCCGGCGTCGCTCGATCCCGCGAACGCCGCCCCCGTCGAGTCCTGGCGGGTCGCGGTCCTGACCTGCCTCGCCGTGACCTGGCTGAACCCCCACACCTACCTGGACACGGTGCTGCTGCTCGGCACCGTCGGCAACAGCTGGCAGGACCAGCGCTGGTGGTTCGGCGCGGGCGCGATGGCGGGCAGCGTGCTGTGGTTCGTCGCCCTCGGCTTCGGTGCGGGCCTGCTGCGCGGCTTCTTCACCAGGCCTGCGTCGTGGCGGGTGCTCGACTCCCTGGTGGCGGCGACGATGCTGACGCTGGGCGTGCTGCTGATCGTGCGGGGCGGCTGAGCTGAATCCGGCGGCTCTCTGTTCGTCCGCTTGCGCGGTCGTGGGCGGACGACCGCGAGATCGATCTGCTGATCGCGGCCTAGACTGATCGCAAGTGAAGGAGAATTCAGTTACCGGCCAGTAGAATGCCTGGTCAGGAAGC # Right flank : GTTGTGCTGCTGCCGGGCTCGACAAAGCAGCGTCCGTGTTTTCGTTCTGTGCTGACTGCCCAGTCGATCCCGGCATGTTCCCGACCCGCTGACCTCGAGTCGCCGACGTCGAATTCGTGCCCCGGCCTCGCGCAGATGTCGGCGGGGACCGCGTCCGCGCGCCGTTCGGAGAACGTGTGGCAGGCCGTTCTCCCGAGAATCCCAGCCGGGAATCCCAGCCAGGCACCGCAAAGACCCCGCCAGCCTGTTCTGGGACTGCCACACCGTCGTCGATCCTCGCCCGGTCGCGTTCTGCCGAGAACGGACTCGGACGGGCACTGTGAATCCGGTGTATAACTCAGGTGTATAGTCAGCTCGACGCTAGTTCGGAACCGTCGGGGGCGGCGAAGGCATCCCCGGCGAAACACCGCGGTGGCCTGCGGTTCTCTCTGGCGGCCGAACGGCCGATGCCGTCCACGGTTCGATCACGGCGGCGGCATCGGCGAAAGATCGTCTTTCCG # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Alternate repeat : GTCTGCCCCGCGTACGCGGGGGTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 5429437-5429103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5429436 29 96.6 32 ............................T GCACTCCGCAACAGCCCGAGATCAGGCTGCGC 5429375 29 100.0 32 ............................. GAACTCCCGCATCCTTTGGTAACAGGATCATC 5429314 29 100.0 32 ............................. TCCGAGACGCTCCGGAGCACGATCATGCTCGG 5429253 29 100.0 32 ............................. GCGGGGGGTTCGTCGTCTACCTCGGAATCCAA 5429192 29 96.6 32 ............................G GCATCGGCCAACCAAGCGTGTGCCGCCGTGCC 5429131 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTTCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GCAGCAGGCTGGTCTCCTCCGGGGCGGAGGCAGACGCACCCGACGCTTACCACTGGACTCATGTCGCGTCGGGCTCCTGGGCCAGGGCGGATCTCGACGCCTACGGCGTGACCATTCGCCAGGCGGGACCGAGGCGACTCTGGACCGAACTCGTGCCCATCCTCGATGCGTGGCATGCGGCAGGCCGCCCCGGTATAGACCGATTCGGGCTGACTGTCACAGCGGGTGGGCGCCACACACTCTGGCTGGACGAACCCGCGAATGTCCTCCGCGATCTCGGCTGATCAACTGGGCCGACGCGCACGGGCCGACTTTGTAGCCTGTGTGTTCCCCGTGATCTTGCGCCGGTGGCTCCGGGCGATCGATGCAAGAGCGAGGGTCGCGAGGAAGGCCGTCGGCGATATTTCGGTGTCAGCGCCGCCGTTCCGGATGGCCCGTTAGACTCGATCCGAGTGAACGAGAATCCTGTTACTCGCGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : GCTGCGAAGGACGCTGGGATTTCTGGAGAGGATCATCCGCACAGTCAAGACAACCCCGGCCCGCCGGCCACCCCCAGCGGCGCGAATCAGGCCGTGCCGGCCAGGGAACGGCCGAGCCTCCCGGCCGAACCCTCGGCTACAACGAACGGTTCGCCGGATCGCCCCGGCCTCAGATTCCGCCCGCGATGCCCATCGCGACCGACGTCGCCGAGCGTTCCATCTCCTCGCGGGCCCGGCGCATCGCGGCGACGATGTCGGCCTCGCGTGCGGGAGTCAGTCGGGCCAGGGGGACCGAGCAGCTGATGGCGTCCAGCGGCGGGGTCGCGTAGCGCATCGGCAGCGCGACGCAGTGCAGGCCGACGCTGTTCTCCTGCTGGTCGACGGCGTAGCCGCGTTCCCTCGTGTGGGCCAGGTCCTCGACCAGCGCCTCCCGGTCGGTCAGGGTGTGCGGGGTCAGCGCGGCCAGGGTCGGCGGCAGATGATTCGCCAGCTCCTCGGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 5891934-5892326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5891934 29 96.6 32 ............................G CGTCAGAGCCCGTCGTCCAGGGCGTCGGCCAC 5891995 29 96.6 33 ............................A AGGGGGCGGCGGCGATGGTCGATGCACTCCCAG 5892057 29 100.0 32 ............................. ACGGTGAGCCCGCGCTGCCCGCCATCGCCGAT 5892118 29 96.6 32 A............................ GGCAGCAGGCCCTCCGGAGCACCGTCGACCGG 5892179 29 93.1 32 A........................C... CGCTGCCGCATCCGAAAGTCCGGGCGGGCGAC 5892240 29 86.2 30 A.......G.........A.........T GCAATCCCTGTTCCCGCTGTGGACACTCGG 5892299 28 72.4 0 .G.....T..T.A....-C.....A...G | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.6 32 GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Left flank : GACCTTCGACGCCGCGCGGGCCGTCGACATCGGACTGCTGAACTCGGCCGTGGCCGCCGAGGATCTCGACGCCGAGGTCAGCCGGATGACGCGCATGCTGGCGGCGGGCGGACCGGCGGCGCTGGCCGCGACCAAGGCGATGCTGCGCAGCCCTCGATCGGGCCGGCTCACGGAGGAGTTCGCCGACATGCTGGCGCTCTCGGCACGCCACTTCGCAGGAGCGGAGGGGCAGGAGGGCATGCGGGCCTTCGCCGAGAAGCGCCCGCCGTCCTGGGTGCCCGCCGACGGGCCGCCGGGCTCGGCGGCCGGGCGAGGCTGAGCGCCCCGGCGGGACGGCGGCCGGTCGACTTCCCCGATCGGCGCGAGACCGCCGGGATGCAGGCGGCAAGCGAGACGTCGTCTATCAGTCGCGTTCGTCCCGGCAATGTGATCGACATCGAGACTCATCCGAAGTGAACGAGAATCCGGTTACCCGCCGGTAGACCAGCAGGTCAGCAAGG # Right flank : GACAGGCCGATCCAACGCGAGCCCCTGACCGGCGCGCACGCACCGTGTCGCACCCAGGAACACCGATCCCGTCGGCTACGCCGATACCCGCCCGCCCGGCTCGCCGCCACCGCCCGCCCGCATGACTCGGCAGGCCCGCTCGGTCTGTCGAACCGCCGTCGTATCGGCCGTGTCTCCTACACTGGGTGTCCTAGCGATGACGGAGGGTGGGGTGGCGATGCGTCAGTCGAGGGATCAGCCGGAGCAGGCCGGGGTCGTCCTCCCGGTCGATCCGTCCGAGACACCGGGGCCGTCGGGCGCCGCCGACCCGTCCGACCCGGCCTACGAGCGGGCGTTCGCCGCCTTCCTCGCACACACCGATCAGAAGCGTCAGATGTGGGCGCATCTGGAGTCGATCGTCGCCGATCTGCCGCGTCACGACGTGCTGATCGACGCAGGGGCAGGCGAGGGCGGCACAACGGCGTGGCTGAGCGGCTCGTTCCGGCGGACCATCGCCGTCG # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 5912560-5912346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016077.1 Actinoalloteichus sp. GBA129-24 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5912559 29 93.1 32 ............T...............C AGGCCGGACTGCTCGTTGAGGAGATGCGACTG 5912498 29 96.6 34 ............................C AGCACCCCGGAGTCCTTTCCTCCGGAGAAGGACA 5912435 29 100.0 32 ............................. TACGCGGTTGGGGGTGACGTCGTGGTCGGGGG 5912374 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ================================== ================== 4 29 96.6 33 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : GGGCGCGCTCGGCCTGGACGACCTTCGGGAGCAGCTGGCGCAGCTGTGAGGCGGGTCGCCTCGGCTGTGGAGTCGCCGGGGCGCCTTGGTCGGGCTGCTCGCGGGCGGTGACCAGCGCAGAACGTGGTCATCGCCCGCGAGGGCGCCGAGCGCAGAGCCGAACGCCGGGCGGAGCGAGTTCCGGGCAGAGCCGAACTCCGGTGCGACGGCCGCCACCGTCGGTTCGGCCCGGTCCCCGCGTCGCTCCTCGGCCTGGCTCGCTTCGGACGGGAAAAGATCGCGAGATCCCCTGCGGAGCCGTTCGATCCGTCGATCCCACCGGACTGAATCGGCTGCCCGCCGGCAGCGCCCGGGCGCGACGGTCCGGGTCCGGGTCCGGGGCGCTCGGCGATTGCGAGTGAGTGGCTAGGCTGGTCCTCGTGCCTGCCGATCGGTTTCCTCTCCTATCCGGAGTGAATGAGAATCCGGTTACCGTCCGGTAAGATCCCAGGTCAGCAAGT # Right flank : CAAGCTGTGCTGACGGCGCGGAATCTCGAACTCGCGGAGTCGTCCCACACCAGCGAGACCGTTCTCGGTCTGGTCCTGATCGGCTCGTTGCCGTCCCTGCCTGCCCGGCACGCGCAGCGCCGTCCCACGGTGGCGGCGTGAGCTGCGGAGGCCGAGAATCGGCGATCGAGTCGATCACCGAGCGACCGGGCTGCGGAGCCCGTCAGTCCAGCGGCAGGGTGCGGCCCAGTACCGCGAAGGGGCGGGGGTCGCCCGCGAAGCGGTAGTTGCGCAGGACGTCCTCGAAGCCGACACGGCGGTACAGCCGCCAGGCCCGGCTGGGGCCCTCCGGCGTGGAGAGCAGCACGTTGGCCCCCTCGGCCTGGTCCAGCAGCATCCGCAGCAGCGTCTCGCCGACGCCGTGTCCCTGCGCCGTGGGCAGCACGTGCAGTTCGGTCAGCTCGAAGTAGTCGGGCAGCCAGTGCTGGGCGCCCGCGGCGTGGCCGGTGTCGAGCAGCCCG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //