Array 1 18143-18826 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 18143 31 100.0 36 ............................... CGGCCCCCGATCGACCATAGGAGCAAAGCGATGGAC 18210 31 100.0 35 ............................... GCTCATGGTGTGCAATGGTAATGCACACCATGAGA 18276 31 100.0 34 ............................... AGTTGCGGGGGCTGCGCCCCCCGTGTCCTCCCTG 18341 31 100.0 34 ............................... AGCGCGGCAGGCATCAAGGCCGCTCACCTGGACG 18406 31 100.0 34 ............................... CTGGCTACGCCTTGTCGAATAACAACGCCAACAT 18471 31 100.0 33 ............................... GTTTTGAATCGCGTGCTCAAGTGCCTTGTCGTA 18535 31 100.0 34 ............................... CAAGCCGTGAACCCCATCGTCACTCGCTTCGCCG 18600 31 100.0 35 ............................... TCTCTTGCTGTCCGCAGGGTCACTCCTCACCCGTA 18666 31 100.0 34 ............................... TGATGCTCGGCGGGTTTAAATTCAGCCTGAACAC 18731 31 100.0 34 ............................... GCGCCCTGCGACGCCTGCGCGCAACCCGCCGCCG 18796 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 11 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCAGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTCCGCTTCTATCAACTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTGGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTAATCTTCTGATGCGAACCGCAAGCGACCGGGGAAAGCCTGGCAGGCTCGCGAAACACGCCAAGTCATTGATTTTAAATTAAAACACCTGACCCACTCCGTTCATTGTATGCCTGCGGCAGCCCAATTTGATTGCGTCTTCGAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAGCACCCATCAGCACTTATGCTCAGGGCG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCGGTCGGGTGTCCTGCCGGGTGTATGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGCGCATCCCTCTTAATGTCCCACGGGTCAACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACATTCCCAAGCTTGTCGCACTCGGCATTAGTGTACGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAATCATAGCCGCCCAACCACTTGCCCGAACCAAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19009-19235 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 19009 31 100.0 34 ............................... GCGCGCATCCCTCTTAATGTCCCACGGGTCAACC 19074 31 100.0 35 ............................... ATTCCCAAGCTTGTCGCACTCGGCATTAGTGTACG 19140 31 100.0 34 ............................... AATCATAGCCGCCCAACCACTTGCCCGAACCAAG 19205 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 38 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATCGCGTGCTCAAGTGCCTTGTCGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAAGCCGTGAACCCCATCGTCACTCGCTTCGCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCTCTTGCTGTCCGCAGGGTCACTCCTCACCCGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGATGCTCGGCGGGTTTAAATTCAGCCTGAACACGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGCCCTGCGACGCCTGCGCGCAACCCGCCGCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCGGTCGGGTGTCCTGCCGGGTGTAT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCAGTGGCACGTGTCCGGCGTCCTGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCACATAAAGGAGAGAGCCGATCATATCCGGCGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCAAGCATTAGTAGTACCTCTCTTCCGGTTCGAAAGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCCGTGCTGCGCGTAGCGGGGTGATTCGCAAGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGCTGCAGCCATCACGCTGCTTGGCGACTTGGACGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCTTTGTGAACGGCTTCAGCTTGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19420-20368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 19420 31 100.0 34 ............................... CACATAAAGGAGAGAGCCGATCATATCCGGCGTG 19485 31 100.0 36 ............................... TTCAAGCATTAGTAGTACCTCTCTTCCGGTTCGAAA 19552 31 100.0 32 ............................... ACCCGTGCTGCGCGTAGCGGGGTGATTCGCAA 19615 31 100.0 34 ............................... CGCTGCAGCCATCACGCTGCTTGGCGACTTGGAC 19680 31 100.0 35 ............................... TCTTTGTGAACGGCTTCAGCTTGGTCAATCATAAA 19746 31 100.0 33 ............................... CTGCTTTAACGACAATCGCGGCGCAACCGGCTT 19810 31 100.0 35 ............................... TCGCGGCCTGCGAGCGTCCACTCGCGTTCGTCGTC 19876 31 100.0 34 ............................... AGTCCTGCCATACGGGCGGCGAAGTGTATCCCTC 19941 31 100.0 35 ............................... AAGAAACGGTCCTGACACGCATGCATAACACACAT 20007 31 100.0 36 ............................... GAACAGCTACGCAATATGCGCGATGCGGTAATGGCG 20074 31 100.0 33 ............................... TGGTGTCGCGTTCCTTGTCCTTGTTTTATCCTT 20138 31 100.0 35 ............................... AGCAGCAACTACGGACGGGACTTTGCTGTCGTGGT 20204 31 100.0 35 ............................... CAGTACACCAGGTGATTGAGGCGCCAGCGATCAAG 20270 31 100.0 37 ............................... TTGATCGCGGTGTAGGCCATCAGCGCGGCGATCGGCG 20338 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 15 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCGGTCGGGTGTCCTGCCGGGTGTATGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGCGCATCCCTCTTAATGTCCCACGGGTCAACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACATTCCCAAGCTTGTCGCACTCGGCATTAGTGTACGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAATCATAGCCGCCCAACCACTTGCCCGAACCAAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCAGTGGCACGTGTCCGGCGTCCTGC # Right flank : CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGACCGGTGAATCGTTCCAAGTAAGAGTCGCGTCCTCACGGGCGCGTGGATTGAAACCATAAGGCGACTTCGCACGAAAGGCTGGAAGCTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCATGGCAAAGCCGGCGAGCCGATGACAACTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGACTGGTCGCGACGAACACGTTGGCCGGCTCGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCGCTGCACCGCCCGCTGGCGTTACCACGCTCCAGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCTTCGAGGCCACCCACTTGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 20551-21566 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 20551 31 100.0 34 ............................... CATAAGGCGACTTCGCACGAAAGGCTGGAAGCTG 20616 31 100.0 33 ............................... ACCATGGCAAAGCCGGCGAGCCGATGACAACTG 20680 31 100.0 34 ............................... TGACTGGTCGCGACGAACACGTTGGCCGGCTCGT 20745 31 100.0 37 ............................... TCGCTGCACCGCCCGCTGGCGTTACCACGCTCCAGTC 20813 31 100.0 35 ............................... AGCTTCGAGGCCACCCACTTGCGGGTATCGACACG 20879 31 100.0 36 ............................... ATGCGGCTAGCGTCCTTGTTCGGCGGCACGGGCAGA 20946 31 100.0 35 ............................... TGCATCCAGTACGCAGACAACTCTGCCTCGCCAGG 21012 31 100.0 33 ............................... GCAATCGCGCCGCCCCAATCCTTGCCGAAAAGA 21076 31 100.0 35 ............................... AACGTGCGCTACGACGCACCAAACCTGCTGGCCGA 21142 31 100.0 34 ............................... TGGTCAGAACTTTCATGCGGTTACCTTGCGAGCG 21207 31 100.0 35 ............................... GTGATCCGGATTACCTTGACGACGGCTTGCCCGTA 21273 31 100.0 38 ............................... GTGCCGCAGCGCTTGCACCATTGAGCGATGATCTCGGG 21342 31 100.0 35 ............................... TTCCCGTCCACCCAGAAACCCCAGACGCCGCAGTA 21408 31 100.0 33 ............................... CAGCTGATGCGCACCCCAAGCAACCACAGGCCG 21472 31 100.0 33 ............................... TGGCCTACCGCCGCAGACACCGATTGGATATTC 21536 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 16 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATATGCGCGATGCGGTAATGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGGTGTCGCGTTCCTTGTCCTTGTTTTATCCTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCAGCAACTACGGACGGGACTTTGCTGTCGTGGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAGTACACCAGGTGATTGAGGCGCCAGCGATCAAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGATCGCGGTGTAGGCCATCAGCGCGGCGATCGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGACCGGTGAATCGTTCCAAGTAAGA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCACGCTGGGCGCCGTGGTCTACCTGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCGAGAAGCTGCGCGCAGGCCGGATGGAGATCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGATAAAGACATCGCCCCGGGCACCGAGCACAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATTCGGGCTTGTCCAGTTTGTTGAAACACGCGGAAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGTAGCCACTCGGACGTGGCGCACAGGTCGGCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCTTGCCGGCGTACGGACGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 21753-22310 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 21753 31 100.0 33 ............................... ACCGAGAAGCTGCGCGCAGGCCGGATGGAGATC 21817 31 100.0 33 ............................... CGGATAAAGACATCGCCCCGGGCACCGAGCACA 21881 31 100.0 36 ............................... ATTCGGGCTTGTCCAGTTTGTTGAAACACGCGGAAG 21948 31 100.0 35 ............................... GCGTAGCCACTCGGACGTGGCGCACAGGTCGGCCG 22014 31 100.0 35 ............................... CTTGCCGGCGTACGGACGGAACCCGCGGCCTACGA 22080 31 100.0 35 ............................... ACCTTGACGCCGTGGCTGGTGCGAATCGAACAAGG 22146 31 100.0 35 ............................... CCTTACCGGGGGCGCCCGTTAATACGACCCAAGTA 22212 31 100.0 37 ............................... ACGCCTCGCGTCTCCACGACGCGGTTGCGCATGTAGT 22280 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 9 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TTGACGACGGCTTGCCCGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACGTGCCGCAGCGCTTGCACCATTGAGCGATGATCTCGGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCCCGTCCACCCAGAAACCCCAGACGCCGCAGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACCAGCTGATGCGCACCCCAAGCAACCACAGGCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGGCCTACCGCCGCAGACACCGATTGGATATTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCACGCTGGGCGCCGTGGTCTACCTGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGCCGGCGTAGCGCTGTATTCGTTCATCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGATGGGAAGAACCGCAGACCGCCCAAGATATCCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCGGTGCCCAGTGGCTCGCCTCGCCGTCCCACGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGGCAAAAGACCCCCAGGTGCATAAAATCTAGCACGTCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 22605-23426 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADM01000010.1 Xanthomonas translucens pv. cerealis strain NCPPB1943 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 22605 31 100.0 35 ............................... AGATGGGAAGAACCGCAGACCGCCCAAGATATCCC 22671 31 100.0 35 ............................... AGCGGTGCCCAGTGGCTCGCCTCGCCGTCCCACGC 22737 31 100.0 36 ............................... CGGGCAAAAGACCCCCAGGTGCATAAAATCTAGCAC 22804 31 100.0 36 ............................... CTAACTAAAGCCACCAAAAGTTCAAGGTCGCTGGGT 22871 31 100.0 35 ............................... TCTGTGGACATACCGGTAGTTGCAACGATCTTAGC 22937 31 100.0 34 ............................... TTTTAAGCGCAAACGCCGTCTCTCTCTCTGCATT 23002 31 96.8 34 ........A...................... AGGTCGAACCAGTCCTGGAAGCCCGCATACTGGC 23067 31 100.0 33 ............................... GCTGCCGTGAAGAAGACCACGGCCATCCCCGAA 23131 31 96.8 36 .....................A......... GGGACAAAGGAAGTCGATGCGCTGGGAGATTCCAAC 23198 31 100.0 35 ............................... ATCGCCACCGACGCGCACGCGCGGATGCAGAACGG 23264 31 96.8 36 .............A................. AGGAGGTACAGACCTTGCGCCACGCTTGGGGAAAGG 23331 31 96.8 35 ................T.............. CACCGCACCGTCCGCAACCTGCTGCCGATTAGCAC 23397 30 87.1 0 .......G...............-GC..... | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 98.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAACACCTTGACGCCGTGGCTGGTGCGAATCGAACAAGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCTTACCGGGGGCGCCCGTTAATACGACCCAAGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACACGCCTCGCGTCTCCACGACGCGGTTGCGCATGTAGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGCCGGCGTAGCGCTGTATTCGTTCATC # Right flank : CAACTTTATCTGCCTACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCGGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGCGACTGCGGTGTGCTTAGCGGGACGCGATGTGCATCACTTGACTTCGAATTCCTGCGCCGTTCCGGCCGGCTGGCCGTTCACGGTAACCGCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGGGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGTTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGGTCAGCGGCGCCACCGCTTTGTCGGTGCCGGCGGTATTACCCACGGCCACCGAGGCGACCGTCACCGTGCCGGCATTGGCCGCGGCCGGCGCCGTCTCTGCCGGACCTGGCATCGCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //