Array 1 451-1476 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JWMU01000015.1 Neisseria meningitidis strain Nm210622 Scaffold15, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       451	    36	  97.2	    30	........G...........................	TTCCCATCTTACTCTCCCCTTGCCACTCAA	
       517	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
       583	    36	 100.0	    30	....................................	TTTTCATCGTAACATAGTTGCTTGCGCCAA	
       649	    36	 100.0	    30	....................................	AAATTTAAAAACTTCAAAATTAAATACAAG	
       715	    36	 100.0	    30	....................................	AAGGGGGGTCAGGGGGGTCGGAAAAAATAC	
       781	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
       847	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
       913	    36	 100.0	    30	....................................	GACGTCAAATCGCGTTACGCCATGGCGCAG	
       979	    36	 100.0	    30	....................................	AATCGCCTCGAGCCATACGGAATCAAGCTC	
      1045	    36	 100.0	    30	....................................	ATACGAACTCATCCGGAGCCACGCCGAGCC	
      1111	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
      1177	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
      1243	    36	 100.0	    30	....................................	AACCGTCTGCACCGTAAATGTAATCAACTT	
      1309	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
      1375	    36	 100.0	    30	....................................	ATGTTTTTGGCGAGATGGTCGTATGTATCG	
      1441	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   AAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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