Array 1 953570-959448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004350.1 Corynebacterium casei LMG S-19264 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 953570 29 100.0 32 ............................. GATGCAATGCAAAGCGGGGAAGACCTGATCGA 953631 29 100.0 32 ............................. GGCCTGTGTTGTTAGAATGCTCAATCGTGTAC 953692 29 96.6 33 ............................G TTCGCAGCATAATGCATCCGGTATCCGTCCGGC 953754 29 96.6 32 ............................G GGGACACCCAATGAGCATCTTCCTATGGCTAA 953815 29 96.6 32 ............................G CCATATTGTCAAAATTAGCCGTTACCAGCACA 953876 29 100.0 32 ............................. TGGATCAAGAATGTTTGCACGGTTCCGAAGAT 953937 29 100.0 32 ............................. CATTCTTTTGCCGTTCGCGCTCTTTGCGCCTG 953998 29 96.6 32 ............................G AAGCTACCGATTGCGTTGTGGTGCCCGGGTTT 954059 29 100.0 32 ............................. CCTAAAGAACCTATAAACGATCAAAACCACCA 954120 29 100.0 32 ............................. CGTACATGCCAGTTACTATGTTTATTGTTTCC 954181 29 100.0 32 ............................. GTCAGGCGATACCACTACACGCCCATATACTG 954242 29 100.0 32 ............................. CGCGTACCCACCCACGCATGGAGCACTAAAGA 954303 29 96.6 32 ............................T TCCGCGTCCTAAGTGACGTTGGACGTGCTGCT 954364 29 96.6 32 ............................A CAGCACGCTTCATGCACGTAGTGAGAGACGAT 954425 29 100.0 32 ............................. CCACTCGCTCTCTACGTCGTACCGCACCTGAC 954486 29 96.6 32 ............................A TCTAACCCACCCCAACCGAAAGGACACCACAA 954547 29 100.0 32 ............................. CCGCTCAGGTCGCTGCCGTAGTCGTGGCGGAC 954608 29 96.6 32 ....C........................ GCCGCTCACCCGTGGAGGTAATCAATGAGTGA 954669 29 100.0 32 ............................. AGTGAAAGGATCCATCCCCATACAGAACAATT 954730 29 96.6 32 ......T...................... ATCATTCGGTTCAAGAGTTGTACGACTACCGA 954791 29 100.0 32 ............................. GGGGACGTGAAGTACCTCGTTCGTGATGGGGT 954852 29 100.0 32 ............................. TTGATCAACGCGTTAAAGACTGACATTTATAA 954913 29 100.0 32 ............................. GGGGCAATCCTCACAGTGTGAGATATTAGGAT 954974 29 100.0 32 ............................. TCATGACCCCTATAAACCAGGCTAGAATCAGA 955035 29 100.0 32 ............................. GGTAACTCTGTAGGAAAGTGGGAACTAAAATA 955096 29 96.6 32 ............................G AAAAGTTAACGGATCGAGAACATAAGATCCAA 955157 29 100.0 32 ............................. AGAAAGGGCATCGGCTATAAGTCAATTGCGGA 955218 29 96.6 32 ............................G ACTACCTAACCCTGGAATGGAACCACTACACG 955279 29 100.0 32 ............................. AGTTCCAATGCCATTACCGCGCGCAATTTGAT 955340 29 100.0 32 ............................. AATTCGAGTTGTCGAGATCGAACAGTGCCCTA 955401 29 96.6 32 ............................G TAACAGCAACGGCAACAGGCCGAAGCGCAATG 955462 29 96.6 32 ............................G TGCAGCGGCTACAGTCAGCGGTGACACGATTG 955523 29 100.0 32 ............................. TCAGGCGGCGCGTTTTTAATATCTTCAAGCAA 955584 29 96.6 32 ............................G CCTACCGAGAGCCAAGTATGTCACCTGTTCAC 955645 29 96.6 32 ............................G TGCTTCTTCGTGTGCATCGCGCAGCTTTGCGA 955706 29 96.6 32 ............................G CGCGGCGGGATCTTCGCAAGCGAGTGCTTCTA 955767 29 100.0 32 ............................. ATGGTGCCACTGGATGAGTCTTTCCTGGCCTG 955828 29 96.6 32 ............................G TTCCAAGGGCTTGATCAATCTCTACAAAGTTA 955889 29 100.0 32 ............................. CGTGAGATGTCCTCTTGATCGTTGGTAGTGTC 955950 29 100.0 32 ............................. TGCCGTTACTGCGACGTTGCCAAGAAGTACTT 956011 29 96.6 32 ............................G GGAATCGCTGAAGAATCAAACTGCCCGCTACC 956072 29 100.0 32 ............................. TGCTGAAATCCATAGCCCCCGGCAAACATCTA 956133 29 100.0 32 ............................. TGTCCACGGCTAACCGGATCGGATGGGTTGGC 956194 29 100.0 32 ............................. CCGTAACCTGCTGGCGCACGTCCTTCACATCC 956255 29 100.0 32 ............................. AGTCTTGGTTCATGCGGGACTAGATCGATCAC 956316 29 100.0 32 ............................. CTGCCTGCTGGATCATGAGGTAATCAAAATTC 956377 29 100.0 32 ............................. TGTTCCATCATTCATATCATCGGCATCGGACA 956438 29 96.6 32 ............................G GGAGTCAAATTCTGCTCGGATTTGTGCGCGAA 956499 29 96.6 32 ............................T ACACCATCGGGCAAATCCGGCAGCTAGAGGAA 956560 29 96.6 32 ............................T GATAGGGGTAAGGCAGAAACCGTAATTTTGTC 956621 29 100.0 32 ............................. AAGAGCATCACCATTCTCGTCCGCCTGCGCTA 956682 29 100.0 32 ............................. CAGCACCGGTTAACGTTGTGGACGTAGAGCCA 956743 29 100.0 32 ............................. GTGGCAACCGTAGCGCGATCGGTCAATTTCCA 956804 29 96.6 32 ............................G AGATTGATTATGGTGGTTACGGCGAAATTCTG 956865 29 100.0 32 ............................. ATTCCAGTAATTGAACTTATGTCCCCTATAGA 956926 29 96.6 32 ............................T TTACTGCTGCGTTGTGGTGAATTACAACGCGG 956987 29 96.6 32 ............................G CCGCCACACGGCAGCTGACCGATGAAGAGCAT 957048 29 96.6 32 ............................T GCTGGTGGTCAAGGCAAGTCGCTGGGTGATGT 957109 29 100.0 32 ............................. GCCACTAGGATCCACAAGCGGTTTGAGCGCCG 957170 29 100.0 32 ............................. ATTCGGCTGAGGTCAACCCTTTGCAAGGGGCT 957231 29 100.0 32 ............................. GCTTTCGATGAATAAGGAGTTTGTTATGTCTT 957292 29 96.6 32 ............................G GACGCGTTGAGCGGTGCCGAGAGTTTGCTTGC 957353 29 96.6 32 ............................T GAGTGCGTACACATCGCGATCATTCCACTAAG 957414 29 96.6 32 ............................G TCCACGCCGAGCTTCAAGTTACCGAGGCCCTC 957475 29 96.6 32 ............................G TCCACGCCGAGCTTCAAGTTACCGAGGCCCTC 957536 29 100.0 32 ............................. TCGTTCACTGGCACCAGTGCTGCGCCAGTCTC 957597 29 100.0 32 ............................. ACCACGGGTAGGATCCCGGAGCAAGTAGGCTT 957658 29 100.0 32 ............................. TGGCTGAAGCTATCGCAGACATCGATCCTGAA 957719 29 100.0 32 ............................. TACAGAACGCACGCGCCGATCTATTCCGTAAG 957780 29 100.0 32 ............................. TCAACGAAGTATTTGGCGCGGGCTGGGATGAC 957841 29 100.0 32 ............................. GCTTCAACATTGGAAACAAACCGGGGGTCTGT 957902 29 100.0 32 ............................. TCCCGCTGGGTAACCGACAATCCGGAACGCTA 957963 29 100.0 32 ............................. TGCGAGCGCGAGCCTGTGAGCAGCAAAAACCG 958024 29 100.0 32 ............................. CCAGTGGAAACGGTGGCACCAGCGCGTGCAAT 958085 29 96.6 32 ............................G AAGCTACCGAAGTTCAATAGTCGCGGTTCGAT 958146 29 100.0 32 ............................. CGCCAGACAGCCAAGAGCCAACAAAAGTACCA 958207 29 96.6 32 ............A................ AGGCGTGCATTGCACTTGAGGAAAAGGCTAAG 958268 29 96.6 32 ............................G ACGCACGAGTCCAGGACTGTGGCTGTGGCTGA 958329 29 100.0 32 ............................. CAAACCAGCCCCAGTATGAGCGCCCACACTGC 958390 29 96.6 32 ............................G CTATGAGGATCTTGGTCTGTCTGGTAAGAACT 958451 29 96.6 32 ............................G GGCGGCGTTTACGCCTTGCGCCATGGCTACCC 958512 29 100.0 32 ............................. CACACCTGAGTTACGCTGGCGGGATCGTCTGC 958573 29 96.6 32 ............................G GAATTCCCTCCATAACATCGGGGAAAGCGCGG 958634 29 100.0 32 ............................. CTAACAGACACCACGAATGATCAAGATGACAT 958695 29 96.6 32 ..........................A.. ATGCGCCGATCCGAATTGCGCGAATATGTCAA 958756 29 100.0 32 ............................. CAATCATCCCACCCCGCGCCAAAGACCTCACC 958817 29 100.0 32 ............................. CGTACCTTTCGGCACCGGCCAATAACGCAAAG 958878 29 100.0 32 ............................. TGTTTGCAAGTGAGCCGCACACCGTTCTAAAG 958939 29 100.0 32 ............................. AGCCATGTAACCGCCTTAAACGCGCTCCCCGC 959000 29 96.6 32 ............................G AAACCCGATTCAACGCCGGCGTAATGACTGCG 959061 29 100.0 32 ............................. GCCACCGATATTTTCAAGATCTTCCATCGTCA 959122 29 93.1 32 ...................A........G AGCCGCCTGAATCGCAGCAATCGCAGCAGCAA 959183 29 96.6 147 ......T...................... CGGCAAAAGCCAAAAAGGGCAAGCCCGGAAGAGGAAATAAGTATAACCTTCCGGTTCAAAACACCGTTAATGTTCTGAACCGGAAGCCCCTACCTCAAACCCTATAACGAAAGAATGTAAACATGAACCATGCGTATAACAGGACTA 959359 29 82.8 32 .....G...........C.A......T.G TGTTGACGTTTCGGGTTACGATGAATCGCATC 959420 29 69.0 0 ......A.T...T.T.AT........TAG | ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 95 29 98.1 33 ATGTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : GAAGTTATTTCGTCCGGGGTCAATTGGTCAGAGGATGAGATTACGCCATGATGGTACTGGTTATTACAGCCTGCCCAGCTGGGCTACGTGGCGACTTGAACAAATGGCTCATTGAATTGAGCTCAGGAGTATTCGTCGGACGACCCAGCGCCAGGATCCGCGACTTGCTCTGGGAACGCACGGTTGAATTATGTAAGGATGGGCGTGCTCTACTAGTTCATTCAACAAACAATGAGCAGGGGCTAGAGTTTCTTACTCACAGGCATGATTGGGAGCCGACTGATTATGGGGGTCTGACCTTGATGTTGCGTCCTACCAAGAACAGGGAAACCTATAATCGCCGAACGGGTTGGTCAAACGCACGCAGACAAAGGGCGGGATATCGCAAGAATCCGAACGCCTAGTTGTTCTGATGCGTGTGGTTGGTTGTCCGTGTTGAATTTCAAATGAAGTCGTATGTAAAATGCCACTTGGGCTCCGAAACCCCGTGGTCATCGAGT # Right flank : GGGACTAGGGCTAGAGCGCGTCCAGCTCTGAGAGTATTTTCTGTACCAGCTGGTATGGTAGCTAATTTCTTCTCGTGTCTTGAGAAACGTAGAAGTGTATTGAGATGCGTAGATGAGCTTTAGAGGACATGCCAGTCAGCTAAGCGGAAATTATTTCTGTGTCTTGGCACCCTGGGGTGGTCTGGATTTTAGGTCCAGTTGATTTAAGCGACTTTGCTTAAAAACTGCTTCTTGAATTCCTCCGGCGGGATAAATCCCAGTGCCGAGTGAGGATGATACGTATTGTACCTGTGACACCATTGTCCGATGCAGTACCGGGCATGTTCCAGATCCAGGAAGCATTCCTGCTCAAACAACTCATCACGCATCCTGTTATGCAATGACTCCACAAACCCGTTATGCCACGGCTGACCAGGAGGAATAAACGCCTGCACCGTCTCTTCCTCAGCAGCCCACGACTGCAGAGTCTTACTGATAAATTCAGGCCCATTATCCATCCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1052890-1053283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004350.1 Corynebacterium casei LMG S-19264 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1052890 28 96.4 33 ..............G............. TAAGCCCGATATTGTCACCGACACAATCGCTTT 1052951 28 96.4 33 ..............G............. CATCAAAGAGCTGTCCCACAAGAAAAACTTGCC 1053012 28 96.4 33 ........T................... CTCATAGCAAGAGCGGCCAGCGAACGTCACTAG 1053073 28 100.0 33 ............................ CACCCTCGACGCTTTGCGCGCCTTACCTACAGA 1053134 28 100.0 33 ............................ CAAGGTGGAAACACGCAAGGAAGGCAAGGTTGG 1053195 28 100.0 33 ............................ CATTGACGGTTGCTTCTGGCAACGCCATTTCTA 1053256 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 CTTTGCCCCGCACACGCGGGGATGGTCC # Left flank : CCGCAGGTGCCTGGAAAGCAGAATGGTGGGTTGGATACTTCTATAGAGACTCGCTTAACAGGTGAGACCGAATTCCTTTATTCAGAACATCATCTGGCATGGTCCATTGCCGGGATGGCTGCTTTAGGAATGCCACCTTCGGAATACGGGGTCGGGGTAAGTCAAAATGAACTTCGAATTCCTGTGCCTGATTTTTGGGTGACGTTGGATGAGCTGCGAGACCTATTTATTACTCCGGTTCCTGCGGTTCCAGTGCTTCGTTGGAGGTCAACAAGCACGTATGCTTCTCAGCAAGTCAAGCTCTGGGAGCCAATTCTTAGCGCCGACAAATAATATTTAAATCCCATGTCGGAGGTGGACACCAAAATAGCGAATCAGGTTAAATGAGTAAGCGATACTCTCACGAACTCAAACCTCGCTGCTCTAGAAAGGAGACCTGCCTATTGAACAAGTTGCATCAAAACCACCGTCTGGGGTTGTAAAATAGCAGGTCGGGAAGT # Right flank : CGGGACTAGTGGCGCGGTCTTTTGCTTCGGAGAGCTTTGCTTCATACGCGGGGGAATGCAATGACAGGTTGAAGATTAACTTTCATCCGCTAGAAGACGGAATCGGAGGAGTTACGGGAGAATATAGATTGCCATTTGCCCCACAGTTGTCGGCTTAGATTCAAAAATTGTCGTCGGTTCCAAGGCACAACAGTTAATTGGGCTGCTGTACAATTGGTAGCTCGCGTCCTGCGTTTGCGGGAATGATCCAATGATTATGTTTGGTGTAATCAAATTTTCTTGATTTGCCCCGCACACGCGGGGGTGATGTTAATCAGTTGATAACTTCAAACTGTGCGTTCGAGGGATTCACAATACAGCGGGGCTTCATTCTGGGTAGCGTCTTAATGAGAATCACAAGGATCGACCTAGCTATTCGCAAACCTCTCCAGGTCTTCTGGAGCCCCCGCGATGATGATTTGGTCATCGGGGGATAGGGTGCGATTCGCAGCTAGAGGCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : CTTTGCCCCGCACAGGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //