Array 1 15962-18097 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKBN02000040.1 Xanthomonas vasicola pv. vasculorum NCPPB 890 scf_22484_40.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 15962 31 100.0 34 ............................... TCTTTCGTGAATCTCCATTTCCCATCAACCTCAG 16027 31 100.0 35 ............................... TTGAACGTCGGGATAGCCAGCTGGCGGCCAGAACG 16093 31 100.0 35 ............................... AAGGGTCAAAAACGCTCCAACGCCTGCCATGTCAC 16159 31 100.0 34 ............................... ACGCTCCTGGTCGTGACGGCGTGCGCCTACCTGG 16224 31 100.0 36 ............................... GGCCTCGGGCAGCGGTAGCCGGCTGATGCGGTCGAT 16291 31 100.0 33 ............................... CGGCTGCTGTTGTTGCTTCTCCGCACGCTCCTG 16355 31 100.0 36 ............................... ATCACCGATGCCCGCACGGTCACGCCAGACGTGGCC 16422 31 100.0 34 ............................... GACTATGACCTGTCCGGCTCGGCGAGCTGGAAGC 16487 31 100.0 35 ............................... CTGTGGGCGCTGCCGGCCTGGATCGGCAAGCCCAT 16553 31 100.0 35 ............................... TGGCCCTCGCGGTCGGTGAACACGCCGGCGTGGGA 16619 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 16684 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 16751 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 16818 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 16883 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 16950 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 17015 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 17082 31 100.0 35 ............................... CGTTACTGGCAACGAGGCACGAGTTTCCCGGCTGC 17148 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 17214 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 17280 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 17346 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 17412 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 17476 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 17542 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 17609 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 17673 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 17740 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 17805 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 17870 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 17936 31 100.0 34 ............................... CTTTCGCCGACCTTGATTAAGCAGCTTTAGCATA 18001 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 18067 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 33 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : TGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55203-53924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKBN02000028.1 Xanthomonas vasicola pv. vasculorum NCPPB 890 scf_22484_28.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 55202 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 55136 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 55071 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 55005 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 54939 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 54874 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 54808 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 54743 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 54677 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 54611 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 54545 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 54479 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 54414 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 54349 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 54284 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 54216 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 54150 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 54085 31 96.8 35 ...A........................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 54019 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 53954 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 98.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAAGTTGCTGTTGACAACGCGCGTGGATTGAAACCAGTGCCTATGCAGCGGCTGTATCAGCTTCGACG # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78947-79095 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKBN02000017.1 Xanthomonas vasicola pv. vasculorum NCPPB 890 scf_22484_17.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78947 28 100.0 32 ............................ TATGCGCGCATGACGCCCGAGGAATACGCGGA 79007 28 100.0 32 ............................ CGAATTGAACCGGCCGATGCCTGACTGTCCGC 79067 28 92.9 0 .....................A....T. | G [79089] ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCCCGTCGGACCTCACCATGCGCTTCCAGAGCGCGCTTGAGGCCACGCCCGGCGCCGACGTGCTGGTAGCCACCGCGCGGCACGCGCTGCGGCGCTGGGAGAAGCTGGAGGCGCGTCCGGCGCCGCCATCCCCCGATACCACCCCATCCCCATAGCTGCGTACCATCCGACCATGACCACGACCGTCGCCAACACTCCCTACTCGCCCCACGACTTCAAGGTGCTCGCCGAGCAGCACGGCGACCTCCTTGTTGCCTACGAGCATGCCAAGCGCCAGTGGATCGCGGCCGACCGTGCGCTCCAAGACCTATACGCACGCGACCCGGCAGCGATCAGCGGCCGCGACGATGCTGCGGAGCACGAGCCGGAGCATCGGGCGTACGTTGCGGCGAAACAGGCGCTGGCCGACCAGCAACGAGTCTTGCTCGACTTCGAGGCTGCCCACCCGCTCCTCATCGAGGAGCTGACTGGTCGGCTGGTGCAGGCTGATACGCTCTA # Right flank : ACGAAAATGCCCGCATTTCGCGGGCATTTCGCCTTGCAACCTGCGAGCAACGTCAGCCCGGCCTCGCGCGGTCCTGCTGCGACTGGCCGCGCTGGATGCGCTCGTAGATTTCCTCGCGATGGACTCCCACGTCCCTCGGCGCGGTGATGCCGATGCGAACTTGGTTGCCCTTCACTCCCAGCACCGTGACGGTGACGGTATCGCCGACCATCAGGGTCTCGCCGACACGGCGGGTCAGGATCAGCATCTTGCGGTCCTCACTTGAAGCGCACCCCGTAGAAACCCCGGCCAACTCCCGGGTCAGGGGGGACCGGGAGCTTTGGTGTGGCCGGGGGCAGCTGCGACGGGGCAACCGAACAGCTGCACGGTCATCATGCAGGCTCTAAAATCCGCAGTCAAGCATTTCTAACAAATAATCAACTAGGCTCGTTCACTTCTGTTGTTTGTACATCCCCCATCAGGATCGGTTCATCCCGCGTGGCGCCAGTGTCCTCGGGCAG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //