Array 1 256627-257401 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADPEI010000001.1 Bifidobacterium breve strain BSD2780061687_150420_F12 NODE_1_length_372297_cov_42.7606, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    256627	    33	 100.0	    34	.................................	CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT  	
    256694	    33	 100.0	    35	.................................	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 	
    256762	    33	 100.0	    33	.................................	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT   	
    256828	    33	  97.0	    34	...................A.............	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT  	
    256895	    33	 100.0	    33	.................................	CTTTCATCTGATTGGAACGACGCTTCCGATTCT   	
    256961	    33	  97.0	    35	.....................A...........	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 	
    257029	    33	 100.0	    35	.................................	ATGGCCGTCAACAACGGTTCCGCGTTGGCGCTGGC 	
    257097	    33	 100.0	    34	.................................	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC  	
    257164	    33	 100.0	    35	.................................	TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 	
    257232	    33	  97.0	    35	............T....................	CTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTG 	
    257300	    33	 100.0	    36	.................................	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC	
    257369	    33	  81.8	     0	.............T...A.......G..CCT..	|                                   	
==========	======	======	======	=================================	====================================	==================
        12	    33	  97.7	    35	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                    	       

# Left flank :   TCCGGCGATTTGGAACTGGTCGAAGGCGAGTACGAGCTCATCAACCGTGTGGAGGAGGAGAATGCCGCCGAGGCCGCTGCTTCGGTGTCCGCCGCTCTGCCGACCGGTGGCTTCGTGATCCTCGACACCGCTCTGGATGACGACCTGCTGGCTGAAGGCTACGCCCGCGACGCCATCCGCGTCGTGCAGGACGCCCGCAAGGCCGCCGATCTGGACATCGCCGATCGCATCTCCCTGGTGCTGACCGTGCCGGCTGTTGATGTGGCCAAGGTCGAGCAATTCCGCAATCTGATCGCCCATGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGCACCGAGCTGGCCGTTGAGGTCGCCAAGGCATGAGATCGCTGAATTGAGTTTGCTGAGTTGTCAATATTGAACGTTGGGACAGCCCAGTAAACTCGATACGCCAATTGATATGAGCTTGTCGTTGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTT
# Right flank :  TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC

# Questionable array : NO	 Score: 9.15
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-8.50,-8.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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