Array 1 517039-518409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAZ010000027.1 Salmonella enterica isolate 4278_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 517039 29 100.0 32 ............................. GCCGTCAGCAATTACCCTTGCCGCCTCATCAA 517100 29 100.0 32 ............................. GATTAATGCTCACAGACAAACAAGAGGCATTT 517161 29 100.0 32 ............................. GCCAATAATGTCTATGGGTTCGGGCTGGTTTA 517222 29 100.0 32 ............................. ATCCGAGCTAAACGAGCTGGCGCAAACCCGGA 517283 29 100.0 32 ............................. CTGAGGCCGAAAGTTTTCCTTATGCTGTAATA 517344 29 100.0 32 ............................. TATTCCAGGATATTCTCGGCAACCTGAAATAT 517405 29 100.0 32 ............................. ATACCGCCGCGCTGCTTTCTGGTAGTTCTGGC 517466 29 100.0 33 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTGC 517528 29 100.0 32 ............................. ATCGATGCCAATATTTAACTGTGCCTCCCTTT 517589 29 100.0 32 ............................. TCGGAGATCCGGTTACGGTAATTTCAGAGGGT 517650 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 517711 29 100.0 32 ............................. AGTACCAGATCGGCGCAGCTACTATGCGTCAC 517772 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 517833 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGAGGGCATGTTC 517894 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 517955 29 100.0 32 ............................. TTGCAAATACCAGGAATACGGACGGTACATTC 518016 29 100.0 32 ............................. TGGGCCTCGGTTCGTATTCACGGCGTCTTGTG 518077 29 100.0 32 ............................. AAGTAGTGACGAAGCTCGTTAACCTGATTGAT 518138 29 100.0 32 ............................. CAATCTGTATCTGCTCCGGGAGTTTGCGTCAG 518199 29 100.0 32 ............................. CTCCCCTACTTGGGTATTGTACGGAGACGAAG 518260 29 100.0 32 ............................. CGGAATCACAGGGCAATCAGGTTACGTTCACG 518321 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 518382 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGGGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGATAGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 534542-536525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAZ010000027.1 Salmonella enterica isolate 4278_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 534542 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 534603 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 534664 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 534725 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 534786 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 534847 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 534908 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 534969 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 535030 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 535091 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 535152 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 535213 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 535274 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 535336 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 535397 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 535458 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 535519 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 535580 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 535641 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 535702 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 535763 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 535824 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 535885 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 535946 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 536007 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 536068 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 536129 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 536190 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 536252 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 536313 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 536374 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 536435 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 536496 29 96.6 0 ............T................ | A [536523] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCAGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //