Array 1 87327-88232 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDEZ01000004.1 Anoxybacillus ayderensis strain MT-Cab contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 87327 30 100.0 36 .............................. TAGATCCTACTTTTATTAATCTGTATGCACAAAAGA 87393 30 100.0 38 .............................. GTCGCATTTAACCTCGTTAGCGTCGATTTTGATAACTA 87461 30 100.0 41 .............................. CTGGAATTCGTCATGAGACAAAACGATGTCTCGAATTCCAA 87532 30 100.0 34 .............................. ACTGCTTTTTTTTATATATATAACTTGATTGTAC 87596 30 100.0 38 .............................. GCTACTACGTACAGGTAGCTCGACACCTTTTGGTTTTG 87664 30 100.0 36 .............................. TAACCAAGGGCTTCCAGTATGTGATTGTAATCTAAG 87730 30 100.0 41 .............................. CTGGAATTCGTCATGAGACAAAACGATGTCTCGAATTCCAA 87801 30 100.0 39 .............................. CAACTTCTTCGTGGTCATTGCGCGGGTCTTGGCAAGAAC 87870 30 100.0 37 .............................. ACCTCGTTGGCATTTACCTTCGCAACCATAATCATTT 87937 30 100.0 37 .............................. ACCTCGTTGGCATTTACCTTCGCAACCATAATCATTT 88004 30 100.0 36 .............................. CCATCTTCGTGTTCGACATAAGGAACGCCATCCCAA 88070 30 100.0 37 .............................. TTCTGCGCGCGCTGAACCAACGCTTCGAAGCGTTGGT 88137 30 100.0 36 .............................. AATACCAGATCGAATTTCTTTCCATTTTCGTCGCGG 88203 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 14 30 100.0 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ATCCCAAGCGCAATCGACGGTGAAAAGCGTCCACTTGTGCTCGGCGCAGTATTCGTTCTCATGCTCGCCTCGATCTTTTTCACTCACCGTTCGCACGCATACGCACGAAAAATAGAAGAAGACGCATAAACCCATTTTCGAACAAAGAAAAAACGTGTAAAATAAAAGAAAATGGGCAAAGGGGGAATGCACGATGATGTGGATGATCACAGGCTTAGTCATCACAGCCGTCATTGGCTTTGTTATTATTGCGGAAGTGAACGCGGAAGCATAAAACAGTCTCCGAATCGGAGGCTGTTTTTTATACAAAGATTGCGAAAAACTTTCACAACCGTCGTCGACCTCCAATCTGGCAAAAGTCCTAGGGGATCGACGACAAGTTGTTTTTCGCGATTTTTGCATATGTAGCAAGGAACACAGGCTATTGACTGAATTTTCAAATGTGTGTATAATGGTGATGTATAGCTTTTCCATGTGTTGATACATCAACACTTTTTGGG # Right flank : CTTGAGCGCATACGTTTTTTCTTCGATTTCTACTAGATCGAGTTTGTATCATACCCATAAGAATCATTATCATTTGTATTGAAAGCAGGGACGTTTTTCGCCCTGTTTTTATTTTTTTTTGTTACAACTTTCAGAAAAGTATTGCGCAATAAAATGTTCATTTGTATCATCAGTAATATGAGGGTATTTTTTGAAAAGGTGGATGCGTGATGAAGATATTAACGTTTCTTGGAACGAATGATTATCGTGAAACGGTGTATCGTTTTCAAGAGGATGTGTATGCAACGAAGTTTTTCGTTTCTGTTTTAGCTCAACGACTACATCCAAATGACATTTACGTATTTATGACAGACGGAGCGAAAGAAAAAAATGGGGCGTTGTTGCTTGATGAGCTAAAGCGATATGGCGTAGATGAAAAAAAAGTACATGCTGTACGTATTCCGGATGGGCAAACGGAAGAGGATTTATGGAACATTTTCTCTATTGTTGCTGATCAAGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 22773-23966 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDEZ01000039.1 Anoxybacillus ayderensis strain MT-Cab contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22773 37 100.0 33 ..................................... ATTATTTACAGATCAAACAAAGAAAAAAATTAA 22843 37 100.0 35 ..................................... ATGACCTACAGCAAGCGGAGTCTCATCTAATGTGA 22915 37 100.0 34 ..................................... CGTAAAGTGTATTAAATACAACACTAACACCAAA 22986 37 100.0 38 ..................................... TTAAAATCCCATCAATACTGTCAGAAAGGTTAAACAAG 23061 37 100.0 38 ..................................... AGCAAGACTTTGTTCGTGTACCCTGTTCATTTGTTCTT 23136 37 100.0 34 ..................................... AACAATGGGAGATCTTAAAGATGCCGCGCTTTCT 23207 37 100.0 37 ..................................... AAACCAACGCCCAACACGAGCAATCCAGTCGAAAGTA 23281 37 100.0 34 ..................................... GGAAATTGCAAAGTCGCAAACGAAAAGGGGTGAC 23352 37 100.0 37 ..................................... TTGTCGAGGTGGAAAAAAGATGAGAAAGTTGGAAAAA 23426 37 100.0 34 ..................................... TTGAGTTTTGGAATGAATTGATCCGCAATGGATG 23497 37 100.0 34 ..................................... TACATTTACAGGAGATACAAGATGTTCTGATGAT 23568 37 100.0 33 ..................................... TGCTTGCATGGTTTCCATTGGTTCGGGCGCATG 23638 37 100.0 33 ..................................... TAAAAATCCGAGACATATCAGCTCGCGCATCAA 23708 37 100.0 35 ..................................... ATGCTCAGTGATCCCTAATTCGTTCAGCTGCTCGA 23780 37 100.0 39 ..................................... TGTTCCAACGAATTTTTTATTGTTTTTATAAGCGTTAAT 23856 37 97.3 37 ..................A.................. ACAATACTGACAAACCAAAAAAACAGGGCGAGTTTAC 23930 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 99.8 35 GTTGCACCCAGCATAAACGCTGGGTGAGGATTGAAAC # Left flank : GTAACATATGATGTGGAAACACTAGAGTCAAGTGGTCAAAAGCGACTACGAAAAGTAGCAACCATTTGTCAAAATTATGGGCAACGTGTGCAGAAATCTGTTTTTGAGTGCAGTGTTAATCAGGCACAATTGGAAGAGATGGAACACCAACTGCTACGTGTTATTGATTTAGAAAAAGATAGTCTGCGAATATATACACTGTATGGTCAACGATCTAAAGCAGTTCGCTCCTATGGAAAAGATCATTATATTGACTATAATGATCCGATTATTTTATGAGAGTGGAACGTATAAAACATGTGTAGCAGTATAAATAACGGTGCGCGAACATAAAGCAATGGTAAAAAAGCAGGGGAGATCGCGATGAATAGAAAGATGTTTAGTAAAGCGAAAAGTCAAAAATTCATCAGGGACTATCTTAGTCATAATGTAGCACGAACACAGCAGTTCGCGTTTTTGTACTTTCAAATCCGCCTCACACAAGGAGTTTAAGCACGGGC # Right flank : AGCCGTAAGGATGATGAAAAAAACGAGAATATGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAACGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.80,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 67221-66170 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDEZ01000010.1 Anoxybacillus ayderensis strain MT-Cab contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 67220 30 100.0 39 .............................. TTGGATCCGCCCATACTTCATATTCGTGGAAACGACCGT 67151 30 100.0 39 .............................. GCGATCGCGAGCCGACTAGGTTAGGCGGTAGCGTTTAGC 67082 30 100.0 38 .............................. CAAATGGTGCATACGATGCTGTTGTTACAAGATACGGT 67014 30 100.0 37 .............................. GCTATTGTCAATTTTGGTTCAGCCGTTTCTAAATATA 66947 30 100.0 36 .............................. CCCGCCTGCTTCTAGGTCTGCTTGATCGAAAAAGCC 66881 30 100.0 35 .............................. CTGATTTTTTCATGCGGAGAATGACTTGGTGCCCA 66816 30 100.0 38 .............................. TGTCTAATATCAATTACTTTGTTCCGATCGGTCAAATG 66748 30 100.0 37 .............................. ATTTGGGCGTATACGGAATAGAAATTTTCGACATGTT 66681 30 100.0 40 .............................. TCAAATCAGCAGGTCCGCACTACACGATTTACGCGAGTAG 66611 30 100.0 39 .............................. CATAAAATAGCGGAATGTTCCATAATCCACTGAGCCATG 66542 30 100.0 37 .............................. ATTAGAGAATGACGGATAGGTCGAATCCGTCGTCTTC 66475 30 100.0 39 .............................. ATTCATACCGAGGGATATTTTGATTTGCTAGAACCGACC 66406 30 100.0 39 .............................. TACTCGCTATCTCAATCATCCCGCAAAGCAAGGGGGATG 66337 30 100.0 38 .............................. AAAAGAGAGTTTAGGAGGGGTGAACTTGGAAGAACAAA 66269 30 100.0 39 .............................. TTTCCTAGGAGGTGGATAATATGGCTAAGTTTTACCACG 66200 30 100.0 0 .............................. | G [66172] ========== ====== ====== ====== ============================== ======================================== ================== 16 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TTATACAATTTGCTTCACAACAGCATCGAAGCGATGGAAGAAGGCGGAACGATTTGCATATATTCCGATGTCGATGAAACGTACAACATGTACATGTACGACTCTGGAAGCGGCATTCCGACACATATGCAGGAGGCGATTTTTGAACCATTTATCACAACGAAGTCGTCAGGGACAGGATTAGGATTAACGATCGTCAAACGAATTATTGAAAACCATGGCGGAACGATTGCGCTTCACGACAGCTCGGAACAAGGAACGACGTTTGTCATTCGTCTTCCGATTCACAGATAAAAACAACATATTTGCGGGCTTGTTCATCATTTCACAACTGTCGTCGACCTCCAATCTTGCAAAAAACCCGGGGGATCGACGACAAGTTGTTTTTCGGGATTTTTGTAGATGTAGCAAGGAATACAGGTTATTGACTGAATTTTCGAATATGGGTATAATGTTACTGTATAGCTTTTCCATGTGATGATCCATCAACACTTTTTGGG # Right flank : CGTCATCTCGCCTCCGTTCGTTTGAAGTAGTGTTTTTTGTGTGTAATTTTTAAAATTGAGTTAGTGAAAATTAAATTAAAAGAAAATCATATGGGGGTGGATTATGGATAAGGTATCACTTTCTGAGTCAATGTGGAAAGAATTATTGTCTTTACTGTCTAAAGAGAAAGAGGTCCATACATTTAAAGAACAAGCGACTTTTAAAGTGATTTCATTTTCAGATTGATGGCATCAACGTGCGACTGACATCAAAAGAAAAAGAGGTGTTTTTAAGCAAGAAGGATATGATGAATGTTATTTATAAGTTGATCGATCGTGTTGATGGTGTACGTCAGAAAATGGTTGATCCTGAATTCCGTTTAAAGCTTGGCTTGCTTTCCCTTCTTTCTTCAACAGAGAAAGTAAGAAAGATGGAAAAAGGAAAAGAGGTTTTATATTTAGTCTTGACACCAGAGGCTCGTGCAAGATCAGAAAAATAATTTGTTGTATAGAAAAAGTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1492-7281 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDEZ01000006.1 Anoxybacillus ayderensis strain MT-Cab contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1492 29 100.0 34 ............................. GCTTTACGAACACGTGCCGATGCGGAAAAGATTA 1555 29 100.0 37 ............................. ATGTGCCAAAAGGAAAATATCAAGGTGTTTGGTTTGG 1621 29 100.0 35 ............................. TTTCATCCGCGTGTCAATCCCACGCAATTGTTTAA 1685 29 100.0 37 ............................. ATTGAGAATGACGAGTATTTCGTCATGATATGCGAAC 1751 29 100.0 39 ............................. TATTTTTCAAGTTGTTCTAAAGCTTTTCGCATGATGTCT 1819 29 100.0 39 ............................. TCACAAATAGGGCAGGTAGTATAAATTTCAGCTTCTTTT 1887 29 100.0 38 ............................. TCGGCTGGATATTGACGCGGTTGGTCATGCACAAGTAA 1954 29 100.0 39 ............................. TCGCAGCTGGATATCGTGGTGGGCTTGAGTATACTTCGA 2022 29 100.0 39 ............................. GATGAACTATTCGTTCATTGGGACGGTGAAAATTTGAAA 2090 29 100.0 36 ............................. ATTGAACGGTGAAAAGGAATGTTTAAACAAAACGAT 2155 29 100.0 36 ............................. AACTTTATCACAATAATCTTCTAGCAAAGGCTTTAC 2220 29 100.0 38 ............................. CTTATTAATTACTGTTTACAATATCACTCATACCACGC 2287 29 100.0 40 ............................. TCCAGTCCGACTGAAAGGAAAGCCGTCACTGTCATGACAC 2356 29 100.0 36 ............................. CTGGAGGTAGTTACATAAAATAGCGGAATGTTCCAT 2421 29 100.0 39 ............................. TTGAAACAGCATTAGGGAAAAATGCTTTCAAGTCTTTTA 2489 29 100.0 34 ............................. AAAATAGCCCGTATTGCGTTTTTGGGTGTTTTGA 2552 29 100.0 36 ............................. TCGGTGTATGTGTCATGCTTCTGCTCGACTTCTTCT 2617 29 100.0 36 ............................. AATTCTTTTTGACTAAGTTTTTTTTGTGAACGCAAT 2682 29 100.0 40 ............................. GCGTAAGTTGCTACCGTTTTGAAGGAGAAGAAAACGATGC 2751 29 100.0 38 ............................. CTGTTTATTCCTGACGTGACTGGTGGTGGAGTGGGTCG 2818 29 100.0 37 ............................. TAAAAATTTTATATTTCACTAGCAAACGCTAGTTGAA 2884 29 100.0 39 ............................. TCACCTCCCATGTTTCAATATTGTAGATTAGCGACAAAT 2952 29 100.0 38 ............................. CGTGTTTCTGAAATTTCTAATTTTGTTGGAACTTATGA 3019 29 100.0 34 ............................. CGCAAAGTTACAATGCCTGTCGGCTATGAAAAAG 3082 29 100.0 37 ............................. TGATTGCGACATGCCACATCACGTCTGCGAGTTGTTC 3148 29 100.0 39 ............................. TTACAGTTTTTACCAAATGAAAGGTTCCCTCGAAATTTT 3216 29 100.0 36 ............................. TCCATTCGGGATGAATGAGTGATGGAATACCGCATC 3281 29 100.0 35 ............................. ATGATGTTTCCTCCGGCGTCGCGAACAACTGATGA 3345 29 100.0 38 ............................. ATGGATTGACGACATTGGAGAAGAACTTGTCATTGAAG 3412 29 100.0 39 ............................. TTACAAGCATTGTAAAAACTAAATATAAGCCGATTCTGT 3480 29 100.0 40 ............................. CGTGTTTCGGAAATTTCCCATTTTGTTGGGACTTATGAGG 3549 29 100.0 37 ............................. TCTAATCCGAGTTCGTTTCCAATTGAAAGCAAAAAGT 3615 29 100.0 37 ............................. GGAAAGCACGGAAAAGGAACTACGTTTTGAATTAGAC 3681 29 100.0 36 ............................. AGCATCTGTAACAAATGGAACATCTTATTCGTTCAC 3746 29 100.0 36 ............................. CAACCCCTCACATCAACCGTGTTTACATGCTCTACA 3811 29 100.0 40 ............................. ATGATAAGAGGCGCTTTCGTTCCGTTCTCGCTTGGCAAAT 3880 29 100.0 38 ............................. CATGATCGAGAAAAAACGCATCGGTGAACCAGTTTTGC 3947 29 100.0 36 ............................. AGACGTGACGGTTATTGTTGACGATCAAGGTGTGCT 4012 29 100.0 38 ............................. GTCGCTATTGTTCATCGGTGGGTTTGGTTTAGGTAAGT 4079 29 100.0 39 ............................. AAACTTGATTTCGTGGTTCGACAATCTTACAGAATTAGA 4147 29 100.0 34 ............................. TTCTTCGAATTCGACACAATAGCGCAAGTTTTGA 4210 29 100.0 39 ............................. ATGCACGAGGGAGGACGAAACAACGCGCTGTACGCGCAT 4278 29 100.0 34 ............................. ATCACCTCGCTAGACGCTTTATTTTGCCTTGTAA 4341 29 100.0 38 ............................. ACGCAGATCGGTAAAATGTTCGAACCTGCTTTATCAGG 4408 29 100.0 40 ............................. TTGATTTCGATTGGTAAGATGCGAATGCTCAATTTTTCTG 4477 29 100.0 38 ............................. TATTTTGATTCATTAGATAGCATTGCATACTATCGTTC 4544 29 100.0 37 ............................. TTGATAGAGAAGATCACGAATCTCCTTTTTCAATTCC 4610 29 100.0 35 ............................. CTACCTAGTTCCGAATGTTTGTTCGAAAGCGTTTT 4674 29 100.0 41 ............................. ACACAAACCAAAGACGTTGCCATGCTTCAAGAATTGTTTAA 4744 29 100.0 41 ............................. ATGGGCTCGTCAAGGATGGATTACAACAACGCCAGGCGCGG 4814 29 100.0 38 ............................. GCAGCAAGTAGAGGGACAAAACGAAAATGGCTTTTCGT 4881 29 100.0 39 ............................. TCAACTAAATATTTTATCATAGGAAAAATTGTAAATATT 4949 29 100.0 39 ............................. CTAAAAGATTTTCTTTAGACGGTTTTTTTGTTGATCGTA 5017 29 100.0 35 ............................. TGTTTTGAAATTTCATAAACCGCTCGCACATCTTC 5081 29 100.0 38 ............................. TTCTCGAACGGTTGAAAAAGGGTGAAAACGTGCCTGGC 5148 29 100.0 39 ............................. GTTGAAGTTGCAGAGAAGGAACAGAAAAAATACGAGATG 5216 29 100.0 39 ............................. GGACATCGCAGGCATGTCATTCTTTTCCACTTATGAGTG 5284 29 100.0 36 ............................. AAGACTATGGTTTAACGGCTCAAGCGTTAAACAAAA 5349 29 100.0 38 ............................. AGAAAAGAAATCTATATCCAAACCGTCCGTGTCCATGC 5416 29 100.0 35 ............................. AAAAATTTTCTTATATCATCTTTGTTTAAATGCGA 5480 29 100.0 37 ............................. TTGTACCCAAAACGGGTTTTGATATTGTTCTTGCAGC 5546 29 100.0 39 ............................. TCGAGATATGACCCTCCTAGAATGTCATAAACGGTCTTT 5614 29 100.0 41 ............................. AAGCAAGCGCAAAGCGAGCAGCTACAATTGGAACTTTTCTA 5684 29 100.0 36 ............................. CTTGCAAGGCTAAAATCTTGTTTGGTAAAAGGTTTT 5749 29 100.0 38 ............................. TAGTTAGGATTTGCTTTTTCATGTTCGATAGGGTTTGT 5816 29 100.0 34 ............................. TGGATGTTCCTGAAAAAATGAGAAACTTCCTTAC 5879 29 100.0 35 ............................. GTATAAAACAGGGCTGACGGGTAAAGCAGTGCTGG 5943 29 100.0 37 ............................. CCGCATAGCGCATTTGAGTCGCTGGACCATCTTCTTT 6009 29 100.0 37 ............................. AGCATTTCACCTACTTTTTAGCGGCGGAAGCATCGGC 6075 29 100.0 36 ............................. TCCCAGCGGTCAATGCCAAATTTCAGCACTCGTTGT 6140 29 100.0 35 ............................. GAATTCGAGCCGAAAACTTACGACAAGTTATTAAA 6204 29 100.0 36 ............................. AAACACGTCGAGGTAATCTAAGTCAATCCCCTTCTT 6269 29 100.0 38 ............................. AGCGGAAGAAATTGTGATTGTTGTTTTGGAACATAACA 6336 29 100.0 39 ............................. CCTAAATAATGATCAAAAGGAACAACAGAGTAATCGGAA 6404 29 100.0 38 ............................. ATGACTTCTACATCACGAAAAGAAGGAGAGGCGAAAAA 6471 29 100.0 36 ............................. TTCATTGTCGCTTTCCTTCGCTTTTTGATATTGTTC 6536 29 100.0 35 ............................. ACATATGACATCTTTGCAGAACGTATTGAAACAAT 6600 29 100.0 39 ............................. GAGTAGGTTCTTTCTATTTTAACCGAATCCTTTGCCCAA 6668 29 100.0 35 ............................. CCGATGAACAATAGCGACTGGAAATCGTATTGTTT 6732 29 100.0 38 ............................. ATCCATATTCCTGGTGCAGTGAGCTTCACGCCTGAACC 6799 29 100.0 35 ............................. GTATAAAACAGGGCTGACGGGTAAAGCAGTGCTGG 6863 29 100.0 35 ............................. ACATATGACATCTTTGCAGAACGTATTGAAACAAT 6927 29 96.6 36 ............................G CAAAAACTAGACTCTTTGACAAAATCCCTTCAAAAC 6992 29 96.6 36 ............................G GTGATCAGTAGAAATGAAGCTGATAGAGCTGAAACA 7057 29 96.6 36 ............................G GCATGTTCAGGCTATTGTTCCACAAGTTGCTTTAGC 7122 29 96.6 35 ............................G GACGGTTATATTTTTTGTGTTTATTCATCTTTACA 7186 29 93.1 39 ..............C.............G CTAGTAGTGGTCATAACGTTTTTTAAAACGGTAGGTGAT 7254 28 72.4 0 .........A.......-.T..AA..TCC | ========== ====== ====== ====== ============================= ========================================= ================== 88 29 99.5 37 GTTTTATCTGAACGTAGTGGGATGTAAAT # Left flank : ACATTTCATTGGCGATGAGCCTTATAAACCATTGAAAGCATGGTGGTAGTTATGTTTGTAATTATTACGTACGATGTTGGGGAAAAGCGCGTAAATAAAGTGTGTAAAAAGTTAAGAGAGTACTTAACATGGACACAGAACTCTGTGTTCGAGGGGGAAATTACTAAAAGTTTGTTAATGAAATGCTTAAACGAAATCGATCAAATTATCGATGAAGATGAGGATTCCATTTATATTTACGAAGTGGCTAATCCGAAGAACATCAAGAAGCAAGTATTTGGACAGGAGAAAAACTTTGATGAACTTTTTCTTTAACATTTGCAGTGAACCTCTAATTTGAAAAAACGGAAAAAATGCTTGATATATCAACAAGAAATGCGGTAGTTTTAGGATAAGAAAAAACACGACTGACACTTCACTGCAAAAAGTAGAAACTTGTCATATCAACCATTCTCCAAAATCGTTGATATGACAGCACTTTGTGTTTTTAGATTTGAGGG # Right flank : CCCCTTTCACCTAATTTTCACCATTCACTCGTACACTTACGGTATACAGTACATGATATGGTGAATCAGGGGGGATATGTGTTGAAGAAAAACATCGTAAAAATCATATTGGACGTCTCAATGGCGATTGCGTTTGTGTTGTTAATGAATCCGAGAGTGTTTAATGGATTGCCGTTTCATGAAATTGCTGGAACTGTAATCGGAGTGGCGATTCTTGTTCATATCGGATTGAACTATCGTTGGGTAATCAACACGACGAAAAAAATATTTTCTTCCGAACTTCCGAAGAAAACGAGGATCAGCTTTGCCTTAAACATCTTGTTGCTTGTTTCGATGGCAGCGGTCATTGTATCGGGGATTTTGATTTCGCGTGTTTTGTTTTCGAACGTCGCACTAGAGGGGAACCATTTTGTACGGGAAATTCACGACCTTTTCGCCAACACAACGCTTGCTTTAGTCGGCCTTCATCTCGGCTTGCATTGGCAATGGATCATGGGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //