Array 1 62-624 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000003.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 62 30 100.0 36 .............................. AACAGGATAGTTGACTTATTGTGAGGTGGAAATTTG 128 30 100.0 38 .............................. CAGCGTAATCAGCGACTTTCTACACCACAGAAGAAGCA 196 30 100.0 36 .............................. ACGAAGGGGATAAGCAACTTCATAAACGGCGTACAA 262 30 100.0 37 .............................. TTTGTCGAAGTTTCCGGGTTTCGTATGGTTTTCGCCA 329 30 100.0 35 .............................. ATTATGCAGGGTGATGTGCCGTTTGACTTCGGTGG 394 30 100.0 38 .............................. AGATAAATAAATTCTAGCACTTTACTTAGGAAACTAGC 462 30 100.0 38 .............................. ACTGAGTATTCGAGACTACACGTGTATGACGAGGAGGA 530 30 100.0 35 .............................. ACTAACTTCTTCAAGTGGTGAAAATGTCGTTCCTA 595 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 37 GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Left flank : GCTTACCTTTGAGGGCTTGAAACACTTCCCCCATTCTCACCCGAGTTTCCACTTTCTATGAG # Right flank : CCAGTACAAATAACTCTCGAACATCCTCGTCTACGGTGAGCGTACTTTTTAATCTCGTTTTTCCCTGAACTATGCGTAACGAATTATATATTAGTGAAGTACCCTGGGTACTGCTTTATGAGGGTCGTCCGTAACTGACAGTCGCTCGTGATCCGTTCATCGGGTACACTGAACTGCTTCTTCCTGACTTGTATCATTAAAGAGCATTCCGTGAAGCTAAGAAGCCGCTCTATTCCGTGAGTGCTGAACACCTTAAACTTGGAGACAGACATTGTTTCTCCTTATCTCGTCCTCATCTTCCTACGTGAGGTCTATACTCTCCATCTCCTATGACGTGCCTCTCCACCTTGTAGGCCTCGTACCTAAGCAAGGTGGAATAGGAGATTCTCCTCCTCCCCACCTTCACCTTACTCTCTAGCTTCTCGTCGAACTTTACGAGGAACTTCCTGAGCGCGTCCTTCTTTAACTTCAGTCCCTCCACCTCGAAGTCATCTTTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1533-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000044.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1532 25 100.0 39 ......................... CTGCCACTTCGTCTTGGGTGATTTTCTTCGAGGGATCGG 1468 25 100.0 38 ......................... ATTCTTCCTCCTGCCGCATATGTGATTTTAAAGCATTC 1405 25 100.0 37 ......................... ACTCGGTCAAAAACAAATATCCCGATTTAACTTACGG 1343 25 100.0 41 ......................... AGGCAGGAAGCATATACCTATCGAACCCAACAACAAGTTTT 1277 25 100.0 41 ......................... ACATTCTTCCGACGTATACGCCTACGATGACGGCCACAGCC 1211 25 100.0 38 ......................... GATCTTTCTGTTCTTTCTGTTCCTTTAGTGTTCGAAGT 1148 25 100.0 41 ......................... AAAGGCTATTAAACACCCGGGTCGTGTCGTTAGAGCGATGA 1082 25 100.0 39 ......................... ATATATTAGGCTCCATCATTCTCCCCTTCACTCCGAGTG 1018 25 100.0 40 ......................... GGTTGAAGTAGTAAACTCCGCAACGAACCCTATTCCTGTT 953 25 100.0 42 ......................... AACCCGTACTCCAGTCCTACGACAGCGCCAACCACCATCTCC 886 25 100.0 41 ......................... ACATGACTCTTATCAAGAATACTGCTGAGTTTTTCTAGCGT 820 25 100.0 41 ......................... CAACTAACGTACCATAGTTTCTCTTCCTTCGACCACCTTAT 754 25 100.0 39 ......................... GATCTCGCGGATGCCGGAGACGAAGAGCGGTGACTCCAT 690 25 100.0 40 ......................... TAGGCCACATACCATAGTTTCTCTTCATTGCTCCATCGCA 625 25 100.0 34 ......................... GGGTTAACAATTACGAAAAGCCAGTACTAGACAT 566 25 100.0 36 ......................... GTAGGCGAGGGGTTGCACATATTGTGCCCCCTCACC 505 25 100.0 39 ......................... GGTGGGGGGTCGTCGACCTCCCATTCGATGTCATTGTCT 441 25 100.0 39 ......................... TACCAAATTCTGTCTGTCATTCTAACTTCGTATTTTGTG 377 25 100.0 37 ......................... CCAGGAGGTCTGGTCACACTCTGCCCGCCCAGACTGT 315 25 100.0 41 ......................... TTGGTCAAGTTGGTGCGGGCTATGGGGTACTCTCAAGAGAT 249 25 100.0 39 ......................... TGTTATGAAAGTGACGCTGACGTTCTTCGCCTTGATTTT 185 25 100.0 36 ......................... GCGCGCGTCCTTGTACCCGTACAGGGAGTAAAGGCC 124 25 100.0 39 ......................... TTATTGATTCGAACTATGTCCCCATTAGGAAGCTTTATG 60 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 24 25 100.0 39 GAAGCATCCTAGAAGGAATTGAAAG # Left flank : TACCTCTGGTGTTTCAGTACAAACGCGACGTGGAGG # Right flank : GAGTACCTCTGGTGTTTCAGTACAAACGCGACGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 739-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000046.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 738 30 100.0 36 .............................. AAGGCGATAGGCTTCACTCTTCCTCAGCCTTCTCAT 672 30 100.0 35 .............................. AATCTCTTCATCGATGATGCTGTGTTTCTTGCAGA 607 30 100.0 41 .............................. TGAAATCGACATTTCTGGTAATTCTTAGAATGAGATCATGG 536 30 100.0 37 .............................. GCCATTCCGCGTATAGGGGATAATATTTCTTCGCAAG 469 30 100.0 42 .............................. CGGATCACCGCTATACTTCGGGTCCAACGGAGGTGTTTGAAG 397 30 96.7 38 ..............C............... GTAGGCAGACAGAACTACAATTGCCTGGTTCCCGGTGT 329 30 100.0 35 .............................. CCATCAGGCTGGTAAAGGAGGGTAAGCTCACTTCT 264 30 100.0 36 .............................. TTCTTCTCACATGATGAAGGGAGGTACTTCGTACGA 198 30 100.0 35 .............................. ACTATCGACCCACTTCTCATCCCGATCCTGCTCTT 133 30 100.0 38 .............................. ACTTCCCCCATTCTCACCCGAGTTTCCACTTTCTATGA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 11 30 99.7 37 GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Left flank : | # Right flank : CAACAGGATAGTTGACTTATTGTGAGGTGGAAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 14137-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000018.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================== ================== 14136 30 100.0 34 .............................. CCGACCTCCCTTCCTGCCTCATCGAGCGTGCCTT 14072 30 100.0 35 .............................. TTCCACTCCTCCACTGTTCCCATTTCCAGTGGGAA 14007 30 100.0 37 .............................. CGTTTCACCCTGTTCAACAATCAGCTTTCCGATACTG 13940 30 100.0 36 .............................. CTAAAAGACTAAGACGAATGAAAAAGACTTAAATAT 13874 30 100.0 38 .............................. TTCATTTTGGGACACTTTAGTACTCATTTGAGGCCCTT 13806 30 100.0 37 .............................. CTGGCCCCTGTATTTTTTGGAAAATGGCTAGAATGGC 13739 30 100.0 38 .............................. GCTGTCCCCCCCGCCCTTCAGGCTCTTGAGCAGTTCCA 13671 30 100.0 36 .............................. CCATCTGGGTATAAACCAGGAAAACTGTTATCATAT 13605 30 100.0 35 .............................. CCTTTCTTGTACCATTCTGCTATCTCATTCTCATT 13540 30 100.0 34 .............................. CAAGCAGCTGGAGTACCTGCGTGCCTTCAAGCTA 13476 30 100.0 37 .............................. AAAACCCTACTTGTATTACATGTATTTATGGTAACCA 13409 30 100.0 36 .............................. ATCACCTTCCCTTCCTTCGGCATCTCGTCGAAATTT 13343 30 100.0 36 .............................. TCATTGGACTCGAAGAAGCACGAGTTCATCGTATGT 13277 30 100.0 35 .............................. AAAATCTAATAGAAGTGACGGGGTACGAAATACAT 13212 30 100.0 36 .............................. TTCCTTGTGTTGGAATCACCAGATGGTTTCTGTATA 13146 30 100.0 37 .............................. GAGAACGCCATCAAAGAAATACGGGACAGCGAGTTTA 13079 30 100.0 35 .............................. GACACGTTCCAAAACGTTATTCATACCTTCGTATC 13014 30 100.0 102 .............................. GGAAACTAGCTTTCTAGCTAGGTGGTGTCGTTGACGCAAAGACTGCCTGAGGGTCTAGCTTGAAACGGAAACTAGCTTTCTAGCTAGCTATCTATCTAACTC 12882 30 100.0 36 .............................. ATATGCACGAAGTCTCCGTTTGGCAGAACAACGTAT 12816 30 100.0 35 .............................. TTTGTGATGGTTCCGCGTACGATGGAGTAATTATT 12751 30 100.0 35 .............................. AGTAACTAGGACGGGTTGATCTGATTGACGCTCGT 12686 30 100.0 36 .............................. CCGTCCTTCCTCCTCTGCCCTTGCCCGCCTCCCTCC 12620 30 100.0 37 .............................. CGGTTTGGGTTTGGGTCGACTCGATCAACCCTCCCTG 12553 30 100.0 36 .............................. AAACGACGAACAAGACCAAGACGAAGACCGCGGTGA 12487 30 100.0 37 .............................. TATACCTCTGTTAACAAACAATAAATTAGCCTCCCCA 12420 30 100.0 37 .............................. GGATAGTAGAGCACGGCAAAGAGGTCCGTTCCGCACG 12353 30 100.0 38 .............................. CGATCAAGAAGTGCCCGTCTCTTCGACGGGCTCGGATT 12285 30 100.0 35 .............................. GCGGAATCGATCCTTTGTTCCCTATGGCTGGAAGG 12220 30 100.0 35 .............................. ATATGGCACGGTACTGCACTCACAACAGGTGCCGT 12155 30 100.0 38 .............................. TGCCACACATCGAAAAAATAAACGTGGATGAGGTTTTT 12087 30 100.0 38 .............................. CCATCCGAGCGAATCCGCGAAACCGAGTTCTTCATCCA 12019 30 100.0 36 .............................. TGTTACCACTTCCGCTACTGCCACTACTGGTACTTC 11953 30 100.0 36 .............................. GTATCGTCACGGGAGAAGTGGTGCTTGCGGTGCCTT 11887 30 100.0 37 .............................. TTGAACCCGTTCCTGAAGAGACCCCGACTGGAGGCAC 11820 30 100.0 37 .............................. TTGAACATCGTGCCATTCAGGCGGCTAAAATCATAGA 11753 30 100.0 35 .............................. ACAACAACACAATAAGGGTAAACGTGATTCCAAAA 11688 30 100.0 37 .............................. TTGTTTCCGCTGGTTGTATTTCCACCACTTGTGTTAC 11621 30 100.0 38 .............................. ATTCACGAGAGGAAGAGCTTCGCTCGGATCCTCGCCCT 11553 30 100.0 36 .............................. GGGCCTGGACGTACCAGCCGGTGCCTAGTGCCTCGG 11487 30 100.0 35 .............................. CAAACAACCAGGGCATTTTGGCTTTCTAGCTTATA 11422 30 100.0 36 .............................. ACCACACCCTTACCTCCGACGAGGGGGCGGCGCAGA 11356 30 100.0 35 .............................. AAATAATGACTTCTAAGACGATTTCGTTCAAAATT 11291 30 100.0 37 .............................. TCAAAATCGACCGGCCTGAAAGGCCGGTTGAGGATGT 11224 30 100.0 36 .............................. GCACTTGAGGAATTTCAAGAGATTATCAAGAAAGTA 11158 30 100.0 36 .............................. TTTTGGCATGCTACCACTTCATTTGACACACATATA 11092 30 100.0 38 .............................. ATACAAAACACGCTAGGAAGCGTGGGGGCGAGCGTGAG 11024 30 100.0 35 .............................. AATGTCATTTGCCTGTAATTCTTTGTCCAATTGAG 10959 30 100.0 35 .............................. CTGTTTTCGGGTCTCCCCCCTCGAGGGGGGTGGCC 10894 30 100.0 37 .............................. TGAGGCTGAGTACAGCCATAGGGGTTCTAGTAGGAAG 10827 30 100.0 37 .............................. ACATTACCTTGGTGAGAAAATGGTCAACCTGGAGAGA 10760 30 100.0 39 .............................. TGGCTAGACCTCCCACGAATACACCAATAGCTGTAAAGA 10691 30 100.0 36 .............................. TTCTCGTCCTTCTCAGGCATCCTTTTTCCCTCCCAG 10625 30 100.0 37 .............................. GCGTCTTGGTAAGCCATTTCACGTCTTCCTCTACTTT 10558 30 100.0 35 .............................. CGATGTAGTGCTTGAAAATGAAGTTCCATCGTGAG 10493 30 100.0 37 .............................. CCGGGAGGCAGGTCGTACTTGAGCACCCCCCACGCCG 10426 30 100.0 39 .............................. CCCTATCGCCTCTTGTGCCGACAGGACTTTTCCTTCGGG 10357 30 100.0 39 .............................. CGAGGAGTTGAAGGAAGAACTTCAAGATGCCCAGCTGGT 10288 30 100.0 36 .............................. AAGGCACCGGAAGCACCACTTCTCCCGCGACGATAC 10222 30 100.0 38 .............................. GCGGCGAACTCGTCCGAAACCTGGATCTGCTGTGCCCT 10154 30 100.0 38 .............................. AGGAAGATGAGAAGATGAACAAAGAGGTACAGGAATTT 10086 30 100.0 37 .............................. ACGTAGATGACTTGAACCAAGTACCGAGGATGCAAGC 10019 30 100.0 39 .............................. GAACAACAACTACGGAACCATCTACGACCTACTGCACGG 9950 30 100.0 36 .............................. TGGTGTTCGTGTTCAATGCTACGTTGATCGTAGGAA 9884 30 100.0 37 .............................. AAACGTCACGGGGGCTCTCTAGCGATGGACGTGAGGG 9817 30 100.0 38 .............................. TGATACGGTCAGGGAGGTGGTAGAGGAAGTAGGGGATG 9749 30 100.0 37 .............................. CCACACTGGGTGACACCCAGTGTGGTAAAGTACATCC 9682 30 100.0 37 .............................. GAGAGAAGGAAGGGAAGGAAAGGAAGGAAAGAAGAGA 9615 30 100.0 38 .............................. TAAAAGAATAATAGCAGAGCTGGAAGAGCGAGTAAAGA 9547 30 100.0 37 .............................. CCCGTCGTGAAGGTCACTACTGGAGTCCTCTTCGTGT 9480 30 100.0 36 .............................. GAAAATGTGATGGCAGTCTTCTATCGGAAACGATTT 9414 30 100.0 39 .............................. GGTGGGTGGGGTTAGTCCGACTCGTCCTCCGAGGACGAT 9345 30 100.0 37 .............................. GCCATGTGTATACAATTGTGTACGAGTAAAAAAACGT 9278 30 100.0 38 .............................. CTAAAACCGGACAACAACAAACTGCCGGAAATGACATT 9210 30 100.0 37 .............................. CTTTAGCTTGGGATAAGTCACCGGGATCGGGAAAAGA 9143 30 100.0 37 .............................. GACGCCCTGGGGCTTATGACCCCAGGCTTTGAATTTC 9076 30 100.0 40 .............................. CCCTTAGGCCACGAGAAGAGTTTCACGTTGGGATCCGTGG 9006 30 100.0 36 .............................. CCCTCTTCCCGTGTAATCTTTTTAAACTCCTTTTGT 8940 30 100.0 39 .............................. TGGGCCAAGTGCGAGTTTTGGGCGCAAGGAAACGAACGT 8871 30 100.0 36 .............................. CCGTCTTGGTCTTCGTTTGTGTGGGGATGGTGACGG 8805 30 100.0 37 .............................. CTCGAAGAGCCTCAGGCCCGAGCCCACGGGTGAAGAG 8738 30 100.0 35 .............................. AAAAGGTGCTCATGGAAATTGAAAAGATGCTCACG 8673 30 100.0 36 .............................. CCCGGACATGTGGCGCAAAGTCACGGCGCAGGACGT 8607 30 100.0 39 .............................. CTTTCGGGGGCTAAGTATAGTTGTGTTAGCAGGGATATT 8538 30 100.0 36 .............................. AAGGGGGTGTGTCCGGGTCCCTGAGCATGCCCCTGA 8472 30 100.0 36 .............................. ATCTATACCTGGTCGTAAGGACCAGGTATGCACTCT 8406 30 100.0 37 .............................. GCGATGGGTGTGGCCTCGGTGAAGGACCCCGAGTTCT 8339 30 100.0 36 .............................. AATACAAATAAGCAGACAAATAGAAAGATAAATTCC 8273 30 100.0 37 .............................. CGATGGTGTTGGGCATCTACACCATGGCCGTCACTTT 8206 30 100.0 36 .............................. AACCTCATCTTTTTCACACTTTCCTCTTTTCCCACA 8140 30 100.0 36 .............................. GTGACGTGATGTCTGTGAAATATTCGTCGTGGAAAA 8074 30 100.0 37 .............................. GACTGAAGAATGAAGTATATGAGAGGTACAAAGACAT 8007 30 100.0 36 .............................. CTCTTCCTGTTGAGAATCCTGCTTCTGCTCACTCAT 7941 30 100.0 37 .............................. AATCAATTCTCTCAGCAAGAGTTGATAAAAATGGGAA 7874 30 100.0 36 .............................. TGGATAAACACATCAAATTTCGACGAGATGCCGAAG 7808 30 100.0 36 .............................. CGGTATCGACCCAAGCCCAAACCGCAATCACCTCAA 7742 30 100.0 38 .............................. TCCTATATGTAGCTTCCCGTTCTTCACCACTATCGTGT 7674 30 100.0 37 .............................. CCATGACAAAGAGTAGGGCTAAGACTTGTTCCTTAAA 7607 30 100.0 35 .............................. CTTGACATACTGGGCTATCTGCTGCGGTGTTAAGT 7542 30 100.0 36 .............................. CCGCCTGGTGTTGTCACACCCGGAAGCGGTGTAACA 7476 30 100.0 39 .............................. GTGTAGGGTTGTATGGCTGCCCCGCACGGGGTGGAAGGG 7407 30 100.0 37 .............................. GGTGCGGAAAACACTACCGAGCCGCCATTCTCACTCC 7340 30 100.0 39 .............................. AACTCACCCTCCTTGTACCCTAGATACATTTGTTTGGGG 7271 30 100.0 38 .............................. TTCTTCCAAACAAAGACTTCGTGCGTGTCAGCCGGCCT 7203 30 100.0 37 .............................. TAATATCTTCAACCGGCCTTTCAGGCCGGCTGACACG 7136 30 100.0 37 .............................. TTTGTTCCGTCACGCTTTTTTCGCACATGAAGTCTCA 7069 30 100.0 35 .............................. AAGACCGACGCCGATATGACGACGACGTACAGGGT 7004 30 100.0 37 .............................. CTTTCCTTCCTTCTCTCCTCTTCTTCCTTCTGGCTGG 6937 30 100.0 39 .............................. TAAAACTGCACCCAGCCTTTTTTGTACCATTCAGTTAGT 6868 30 100.0 37 .............................. AATATCATATCCCTCGAACAGGGGTACGAGGGATATG 6801 30 100.0 38 .............................. CTTTATGTAAAGAAGAAGGAGAAACGGCGAAAGACTGC 6733 30 100.0 35 .............................. TCTGGGCCGATAGCAACTGGGATGGGTCAGTAACG 6668 30 100.0 36 .............................. TTCTTCCCTAACCCTTTTTTCTTCCCCTCCCCTCCC 6602 30 100.0 37 .............................. AGGGCATACCTCAACGCCACCGCGGAACAGCCGACCT 6535 30 100.0 35 .............................. CGGTGCTGGCGAGCTGCTCTTCCTCACCGTCGTTG 6470 30 100.0 36 .............................. AATAATAGCGTAAGACAAACGAACCCATGGCAACGA 6404 30 100.0 35 .............................. GTCCTCCTCCGAGTCCTCCTCGTCCTCCGAGGAGT 6339 30 100.0 37 .............................. ATAATGCCGGACTGTATCCCCGTTAGGAAGCAGGAGA 6272 30 100.0 38 .............................. AGATAAATAAATTCTAGCACTTTACTTAGGAAACTAGC 6204 30 100.0 36 .............................. TCCTCTAGGCTGGTAAAATCTGTCGATCATATCTAT 6138 30 100.0 37 .............................. ACGACTTGTACAATGTCCTTAGCGTGGATGGGCTGTA 6071 30 100.0 36 .............................. TGCGATGTAAAGCTAAGCATGAATAGAGGGAACCTA 6005 30 100.0 35 .............................. TGTCACACGAAGATAACCTGATATCCCACGTAAAA 5940 30 100.0 37 .............................. GTGACCTGTGTCACCTGCGTCGTCACGCCAGCTATGT 5873 30 100.0 44 .............................. AAAAATTCGACCCAGTCGGTGACACCCAGTACGCTGTGTTTGTA 5799 30 100.0 35 .............................. CAGAGCAAGTTCCTCAAATTGGCTTTCGAGTACAA 5734 30 100.0 35 .............................. CTGGTAGTGTCGTTGGCACAGCGACTGCCTGAGGG 5669 30 100.0 36 .............................. CTAGGCCTCCCACGAACACGCCTATGGCCGTGAAGA 5603 30 100.0 37 .............................. AATGAAATAGCTCTGGTCATTTGGCTTTCAGCACCCT 5536 30 100.0 37 .............................. CCTTATCGTTTTCACTATCACAAGAATGGGCACTTGA 5469 30 100.0 37 .............................. CCAGAATGAACTCGAACGCCCCTTTCTTCATCTTTTC 5402 30 100.0 38 .............................. ATAACTGTGTCCCTCGAGGAAGGATTCGAGGGACACAG 5334 30 100.0 37 .............................. TCACTTGGTGGCCCAACTCTTTCAGTCCTCTCTCCAG 5267 30 100.0 36 .............................. ACAGTGTACTCAAAGTAACCCTATCTGGAGTACAGT 5201 30 100.0 36 .............................. ACACAAAACCATTCTTCCCACTGTTGCCATTCTGGG 5135 30 100.0 37 .............................. ATGATCTCAACGACGAATACATGGACAAATGCGAAAG 5068 30 100.0 37 .............................. ATACTTTGGAGAACTCCTGCTTTTATTTTCAATTTCT 5001 30 100.0 39 .............................. AAGATGAAGCCATCAGACAGGGACATGAGTATGCCATTT 4932 30 100.0 38 .............................. GTCTTTTTTCTTCTCTTTTTAGACCTGAAGGTTAGTAT 4864 30 100.0 37 .............................. ATACACAGAGAATGGGAGAATAGATTTTGTCTGAGTG 4797 30 100.0 37 .............................. AGAACAGAGTTTACTATGTTAATTGATTGTACTCCAG 4730 30 100.0 37 .............................. GCGGAGTACGTGAGCATGTACGTACCTGGGGTACCGA 4663 30 100.0 35 .............................. TTGAGGTAGGCGTAGTACTGCCCCAAACTCGAAGG 4598 30 100.0 39 .............................. GTAGGTTTTCTATAACGTCCTCTACCGGCTTCTCCTGAG 4529 30 100.0 35 .............................. CGACGGGGACTATCACATTCAAGTGTGGTACACAT 4464 30 100.0 38 .............................. CAACTACAGTTAGTGTGTGTTCTATTCCATCGTGAATT 4396 30 100.0 36 .............................. ATCCGTAGGAGCCGTTGAGATCAGCGTCATGTCTCC 4330 30 100.0 37 .............................. AGCCGGGCTAGCTCTATGAAACCCCTGGCCTTCTTTT 4263 30 100.0 38 .............................. TGGAGGGATAGAGGGAGAAGAGCTAATAGGGAGGGCCA 4195 30 100.0 36 .............................. CCAGATAGTCATCCGCGAACTGCTGTGCCGTTGGGT 4129 30 100.0 36 .............................. CCAGCCTAGGCTTCAGAGGATATGTATCCAGGCTCC 4063 30 100.0 37 .............................. CGCGGAGTCAGAATTCGAAATGCCGACGACTTCATAG 3996 30 100.0 35 .............................. GCTACCACCGAACAGCTTCTTCAACCCGCTAAAAA 3931 30 100.0 37 .............................. CCGAGAAAAGTTGCCAATTTTGCGGATTGATGACTTT 3864 30 100.0 36 .............................. GTGACGCCGGGAGGGAGCTGCAACAACCCTTCCACC 3798 30 100.0 36 .............................. TTCCACCCCCTCACACAAAGCACGGCCCTTTTCCTC 3732 30 100.0 38 .............................. GAAAGGTCCGACGACGAACTCCTTGCCGTACTCTCGTT 3664 30 100.0 38 .............................. AAGGCGGTGGTGACTCTGACTCCAGACGGGAGAATGAG 3596 30 100.0 37 .............................. CGTCGAGTACCTCATCCTTCCCGGTAAATACGTCATT 3529 30 100.0 38 .............................. CCGTTCCTGTACCCCAGGTAAGCCTGCCGTACGAGGAC 3461 30 100.0 37 .............................. TTCTCATCATGACCTTCGATGGGCTTCCTGCTATTAT 3394 30 100.0 38 .............................. TCATATTCGCAGACGATGAACTCGTGTTTCTTCGAGTC 3326 30 100.0 37 .............................. GGTATGATGTTACCTATCGCGTGAAGTTCTTCCAAGT 3259 30 100.0 39 .............................. CCACGTGGGCCGGTCTGGTGAGGGCCCACGTGGCAACGA 3190 30 100.0 36 .............................. AGAATAATCATCGTCTGATTCAGCAGTTTGTCTGAC 3124 30 100.0 36 .............................. CCGTAAGCGGAGGAGGAACCCGGCCCTCCTCCACCT 3058 30 100.0 35 .............................. ACAGTCGAATTCAGGACCAGTTCGATGTAGTTCAC 2993 30 100.0 37 .............................. TATGCGGCCTTCACCTTCGCGGGCACCCTCATGTCCA 2926 30 100.0 38 .............................. TTTCGCGTCGTCCGGTCTGACTGAGAGCTTCTGAATGT 2858 30 100.0 36 .............................. CCTATACTGTCGATAGATTCGGGCAGAGGATACCGT 2792 30 100.0 35 .............................. TTGTAACCAGAATCGTAATAATAACCAGAAGGGCA 2727 30 100.0 39 .............................. ATCTGCGTTGGGTACACCGCTTCTGCAGTTCCAAGCCGT 2658 30 100.0 35 .............................. AGAAAGAACTTGGGAGGATTGACTGCAGTGAAACT 2593 30 100.0 39 .............................. GCGATTCGGTCATTCAGCTATTCTCATCAGCTCCTACCG 2524 30 100.0 38 .............................. TATTCTTCAAATTTGGCTATCGGTTTAGGCGTATACTT 2456 30 100.0 34 .............................. AAGTGAAGTCTCATCGATATCTAGGAAAAACTAG 2392 30 100.0 39 .............................. TGAGAAAGTCCTTCACTCTTCCTTCATGGGGCTTAAGGT 2323 30 100.0 36 .............................. GTCTCTGAGAAGTCGATTGTGACGGTGAGCAGTGCT 2257 30 100.0 35 .............................. AACCAAAACACGATCGACAGCGTGCTGGGCGTCAC 2192 30 100.0 38 .............................. TGGATTCGCTCGGATGGTGGGTCGCATTTTCGGTGGAT 2124 30 100.0 34 .............................. TCTCACCCCGTCCCTCTACCTTTACCCCACACAT 2060 30 100.0 36 .............................. CTACACCGCCGAAGAAAAAGACGAAGAGGACTCCAG 1994 30 100.0 38 .............................. CCATTCATACAATACTTTAAGCAAGGAGAAATAATCGT 1926 30 100.0 36 .............................. TAGCCCAGCATCACCCGTCCACACTCTGGACAGGTG 1860 30 100.0 37 .............................. ACAAAATGCGAAGAAGAACTTTCACGAAACGCGAAAG 1793 30 100.0 36 .............................. CAAAAAGTGCACTAGGGGTTCGACGGGAGGAAAGAC 1727 30 100.0 37 .............................. GCTATGTGGCCCACAACCAAATCGAAATGATGAATGT 1660 30 100.0 37 .............................. ATGATGTACCGAGGATGCAGGCTCGAGCAGTGGAATT 1593 30 100.0 37 .............................. CTCTGGTATTTCTCGCTATGCCCCAAAAGCCAATCCC 1526 30 100.0 36 .............................. TGGAGGGGAAATTGGAACCACAAGAACAGAAAAAGG 1460 30 100.0 35 .............................. GTAGCCTGGCTTAGCCAATACTTCACTACGAACAC 1395 30 100.0 38 .............................. TCCTCAACCCTTCACGATGTCGCCTCCGCAAGGAGTAG 1327 30 100.0 36 .............................. ACGGAATCACCGCTCATGACCGGGAAATCAAATTCT 1261 30 100.0 39 .............................. CGGAGTGATAGAATCAACAAAGGCATGCCAACCTGGTGT 1192 30 100.0 38 .............................. ACCCTCGTGTTTCTTGCTTATATTAAGGATTATATCGG 1124 30 100.0 36 .............................. AAGACGCAAGTAACATACTCAGAAATTGCGACTACT 1058 30 100.0 37 .............................. CGTTTTCGTGTCCAGTAAAATTCGGGATCATCCACAT 991 30 100.0 36 .............................. AACTTCAGGAGTTGGATCTTCCCCGGAACGTTCACG 925 30 100.0 36 .............................. CTCGAATGTACAGCATCTTGAGGAAGGAGACCTCTC 859 30 100.0 36 .............................. TAACCCAACAACACTCGTCCACATTCTGGACAGGTG 793 30 100.0 37 .............................. CCAAGTGGTCCCCGACGAAGGGGTGCCCTTGCATCCC 726 30 100.0 39 .............................. CGCTAATGTCCTCTCCGTCAAACCCCGTCCTCAAATCGA 657 30 100.0 36 .............................. GCGGAAAAAATGTTGAAATATCAAGGAATTGACGAC 591 30 100.0 36 .............................. TTTGGTGTTTACGGCTGAATTTTTGTTCTTGTTATT 525 30 100.0 36 .............................. ATGGGGAAGGTATTCCAGTACTAAGGGGTACCATTT 459 30 100.0 38 .............................. CTGGATCAGTCACCGACCGAGATAATGATCTCGGCCGA 391 30 100.0 36 .............................. TACATACTCCACGCCGTCGACGACGTTGAACGTTAC 325 30 96.7 37 ..............C............... AAGAGACTTTAGAAACAATTAGTAGGTTCCCCGATCT 258 30 100.0 37 .............................. CTATCGGCAGAAATTCTCAGTTCTACCGGCGAGCTAT 191 30 100.0 36 .............................. CAGCAAGCTAGATATAGAAGTCGTCTACGCAGGTAA 125 30 100.0 36 .............................. AAGGCGATAGGCTTCACTCTTCCTCAGCCTTCTCAT 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================================================================== ================== 211 30 100.0 37 GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Left flank : GCCCGCGGAGATGACGTTCTCTTTGGCTCCTTCTCCTACTTCCCTGAGGTGATCCCTTAGTTCTTTGTTCGGGTGACTGTAATACGCCATTAGGTCACCACTCTATCTAAACGAAACCATACGTTAAGGTCTATAGATCCCCGCCTCCCTTAGTTCTTTGTTCGGGTGACTGTAATACGCCATTAGGCGCACTTGACACCATGCATGCGTATCAACTCCCGCATGGTCCTGCTCATTATAACCTTCCACCACAACATGTTCTCAGAAGTAGTTACTTATTAATGTATTCTAGGTCTTGGGCGGATGGGTTATAAGCTAAATACAATTTTTTATTCCGGCTGAGATTTCGGCAATCTCCCGTGATACTGTAATATGTTTTGGTGAATATATTTCCTCTTGCCTCAAACTCTTGCGGCAACCTACCTCAAGTTCAAGGAAGGAGGAGATTGCCGAATTCCTGGACGAAAAGTTTATGAGAAGGAAAGGAAGAAATAAGAACT # Right flank : CAATCTCTTCATCGATGATGCTGTGTTTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTTTGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 21887-26358 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000018.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 21887 25 100.0 40 ......................... TACAGGGTACGGCAAATGTGGATGTAACCAACGCGGTAAC G [21911] 21953 25 100.0 40 ......................... CTGAATTTTCCGGGTTTATTACAGTTACTGATTTTATTAC 22018 25 100.0 39 ......................... GCCTCCTCCTGCTGTTCCTCCTGTTGTACTTGCTACAGT 22082 25 100.0 39 ......................... TGACGAGGAACGAAACCGCGTCGGTCCTACTTGAGAAAT 22146 25 100.0 40 ......................... TACCCTTGGGGGGACCCCCTAGAAAATGTGATGGCAGTCT 22211 25 100.0 40 ......................... TTTTACGTACCCGAGGTACGCTTCCCTCGGGTACGTCACG 22276 25 100.0 39 ......................... AGCCAATTTATGACGTCGACAAGCTGTCCCTCCTCACCG 22340 25 100.0 41 ......................... ACGTCAGCGCGAGGGGGCTGGAGTTCAGCCTCGTCTACTCG 22406 25 100.0 39 ......................... CACTTCTCTCTCGGTTTCTTCTCTAGGGCTGGTGTGAAA 22470 25 100.0 41 ......................... TTACAAAATAGACAAACGAGACTTTTCCTTTCCATCTCCTC 22536 25 100.0 39 ......................... AGGAATCCTAGGGCAGATCGAGATATAGTAGTTAGCCTT 22600 25 100.0 38 ......................... AGAATATAGGGCTCGTACCCGCATCCCCAAAGCCGAAT 22663 25 100.0 35 ......................... TCGATTTCATTAATGCCATGCCGTCCTATAACAGT 22723 25 100.0 38 ......................... CTTATTCTCACCTTCCTTTTCTCGCCTTCCACTTTTCT 22786 25 100.0 44 ......................... GCGAAGATGATCGAGCAAAACACTCACCCCTTCATCGTCGCGGT 22855 25 100.0 36 ......................... CCTTGTACTCTTCGATTGGGAGGAGGTACTCCTCCT 22916 25 100.0 40 ......................... CCCATTTTCCTGGGCGACAAGGGTGGGGTGAAGTACTTCG 22981 25 100.0 39 ......................... AACCATCGTCGACGCGGGGTTTTGCGGACAACTCACGAT 23045 25 100.0 39 ......................... AACCCAACAACGAGTTTTCAATCGTTTTACTTAGTAACA 23109 25 100.0 37 ......................... ATCACTTCGTTTAATTCTCCCAGTTTCTTACAATATT 23171 25 100.0 39 ......................... TTGAAGGCGAGGATGATTTCCTCGCCTTCGGCGAAGTAC 23235 25 100.0 38 ......................... ATTGCCCCCGCGTCTCGCTCCACCACCCCAACATACGA 23298 25 100.0 40 ......................... TGCCAGGGGGCCCCGGTGTCGGAACCGGGGCCCACATATG 23363 25 100.0 44 ......................... CAAAAGGAGGGGAGGGGGAAATTTTTCGCATGATATTCACATCC 23432 25 100.0 40 ......................... TATTAAACTCCCCTTTCTTGTACCCCAAATACGTTTCTAC 23497 25 100.0 38 ......................... GCAGAGTATATTTCTATGTACTCTGCCAACGTCATGAA 23560 25 100.0 38 ......................... CCCTAGAGGGGAAGGGGTGCGCCAGGATCACCTCCCCC 23623 25 100.0 39 ......................... ACAGACGCCCTCAGCCACACCCGCACCACCGTGCGGGTG 23687 25 100.0 46 ......................... AGTCACACTTCCACCCTGAAGACGGTGAACCTGTACCCTACCTTCT 23758 25 100.0 40 ......................... CGCATAAAAAACCCAAGCCAGTTCAGCGCCGCAGACGCGG 23823 25 100.0 37 ......................... GCCTCCCCTTCCCGGGGAGGCAGAGGGACGAGCAATT 23885 25 100.0 35 ......................... ATTCTTTCGCGAATTGAAAGAACTTTTTAGGGGTG 23945 25 100.0 41 ......................... CTCATTTCTTTTCAAAAAAAGATATCGAAACGCTAGAAAAG 24011 25 100.0 47 ......................... CGAAAACCCAAGCTAGCTCGGTGTGGCAAATACCACACCGAACCGCA 24083 25 100.0 40 ......................... CTCTGACGCGGGGGTCAGCCCCCGCGTCTCGCTCCACCAC 24148 25 100.0 37 ......................... ATGGGGACATAGTCCCCATTGGGCATCACCACATAGT 24210 25 100.0 39 ......................... TTATCTTAAGTCCCTCTCCATCTCTCTGGACGTAAATAT 24274 25 100.0 39 ......................... AACCAACCCGTCGAACCGGCGGTGAGTGGGGCACCCGCT G [24298] 24339 25 100.0 37 ......................... GGGGAGGAGTCGGAGGTGGGGGAGGTGGCTTTCTGCT 24401 25 100.0 40 ......................... ACTTTGGCGCGACTCGGATTGGCTATACCTCCAACCATCG 24466 25 100.0 40 ......................... TCCAAAAAGCGGGGGGTGGGGGGTGCTTCGCGTTGCGGGG 24531 25 100.0 40 ......................... GTTCAGTTAGCGGGAGCACTATTACTCTCGCCAGCGAGAG 24596 25 100.0 41 ......................... CTTCCGGCCCGCTCCCACGCCTCATTACCCCAGGCTTCCCA 24662 25 100.0 39 ......................... CGTCTTTTTGGGCAGCCGGGGAGGGGTGAAGTACTTCGC 24726 25 100.0 39 ......................... GGGTCGGGGGAGGAGACAGGGACGAGCTCCCAAACAGAG 24790 25 100.0 40 ......................... GACAAGATCGTACGAAACCACCCCGCTTTTCACGGCCTCC 24855 25 100.0 39 ......................... ATAGACTCGTTCTTGGGCGTGAGACGGAGTATAGAAACG 24919 25 100.0 40 ......................... TTTCAATCAGATTTGCCATTACATGAAGGTTTTAGGTGGC 24984 25 100.0 40 ......................... AACCGTTGTGGCTTTACTTGGAATAATTGTTTTCGTCATC 25049 25 100.0 41 ......................... TAGTATCAGCGAGCCAATCTAGATATGGCCCATTGATCCAG 25115 25 100.0 41 ......................... ACTTCATTTCAGTTTCGGGCCGACCCCGGCCCCTCGTGTTG 25181 25 100.0 37 ......................... TTAACCGGCCTTTCAGGCCGGGTGACCCGCACAAAGT 25243 25 100.0 39 ......................... ACCTGGGAGGAGCGGGATGAACTGGGAGCTCGTCCCAGC 25307 25 100.0 43 ......................... CCATTTCACGTGGGAAACCTGGGGGAACGAGGCGTGGGAACGA 25375 25 100.0 42 ......................... ACGGGCAGAACGCATACGCTTATGCCGAAGTACCTCAACTCG 25442 25 100.0 40 ......................... AGCAAAGCTCCCTGCCGGCACCCTTCGTTCCGAGAAACAG 25507 25 100.0 38 ......................... GCCTCCCCGGGAAGGGGAGGCAGAGGCTCTATTTTGAA 25570 25 100.0 40 ......................... TTCCGTCTCCCCTCCCCTTCTCGATGAAGGGAAGCACCGC 25635 25 100.0 40 ......................... GTCATCATAGACGAGATCCACAACATAAGCGACAGAAGTG 25700 25 100.0 39 ......................... CCTAACCCCACCTAACCCCTTTTTTTTCTTCTTCCCTTT 25764 25 100.0 42 ......................... TTGGAGTACTTGTCTTAGTTTGTCTAAACTCTCAACATCCCG 25831 25 100.0 38 ......................... ATTCTCTCTTCCAGCCGAGAGAGGATTTTCCCCAATAA 25894 25 100.0 37 ......................... TATGGGGTGTAGTCTCCGGGCTTGATTTAGTGTCTAA 25956 25 100.0 39 ......................... CTGTCCAAGGGGAGAGAAGGGGATAGGGGACGGAAGAAG 26020 25 100.0 37 ......................... CGAAAAGAAGGAAGAAAAGGCTCGTACTCGCACCCCC 26082 25 100.0 39 ......................... GACAGGAAGGGGAAGGACGGGAAGGAAAAAAGGGGTTAG 26146 25 100.0 35 ......................... TTAACCTCGGCAGATTTTCCAAGACATCATCAACC 26206 25 100.0 40 ......................... GACATAGGCGGCGGCAGCAGCTATGACGACGGTTCCTACT 26271 25 100.0 38 ......................... AAGACCCAACCTAATTCGGCGCCACAATGGCACCGAAT 26334 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================================== ================== 70 25 100.0 39 GAAGCATCCTAGAAGGAATTGAAAG # Left flank : TTAGGAGGAAAGGAGGTTAAGGGGTTTTGGACGTAAGGGGCCGTGTGAGGAGCCTATCCAGTTTAAGGTAAACGGCTGATCTACGAAGGGTTCTCGTTCAAACAAAGAAGTAGTACCTAATAAGTTCGTTTAGGATGTTTTCCTTTTTACTTACTAATTCCTCACTTGTTTTCACACGAGAGCGCTAGGAGATGGAAAATTTTTATACCCTCTAGAGAAATCAATACCATAGACGATGAAAGTTATGACAGATTACAAAAAGAACCTTCTAAGAGAATGAGATAGCAGATCTAACCTCAATGCGTATAGTCCGATATCATTACATTGAATTGAACGTATATAAAGGGGGAACCCTCTTTCAATTAAAGAGGTGAAACTTGCGAACGGTCGAATTGGAAAGAGACGTCCACTGACGCGTACGCAAGGAAGGCCACGATGAGGAGCGAAAGCTTATATAATAGGAGCGAGGAAAGGTACAATAGAGGTATATAAGGTGTGCG # Right flank : GAGGATGCTTCAGGGGAGGCAGAGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTTTTTATATTACCTTCGGAAGCATCCTAGAAGGAATTGAAAGAACGTCGCACAGGTGCCTCCGTACAAAGGAACCATATCTAGAAGCATCCTAGAAGGAATTGAAAGCCATCGAGGTAGTGACGGTGAACGCCGACGGGAAGATGAGTCGCGAAGCATCCTAGAAGGAATTGAAAGTCCGACTCCAACGAGGAGCCGGACGAGGAGGACTCGGAGGAAGCATCCTAGAAGGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 3 26641-33750 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQS01000018.1 Sulfodiicoccus acidiphilus strain JCM 31740 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 26641 25 100.0 40 ......................... AACGTCGCACAGGTGCCTCCGTACAAAGGAACCATATCTA 26706 25 100.0 44 ......................... CCATCGAGGTAGTGACGGTGAACGCCGACGGGAAGATGAGTCGC 26775 25 100.0 39 ......................... TCCGACTCCAACGAGGAGCCGGACGAGGAGGACTCGGAG 26839 25 100.0 36 ......................... CCGGAATCGTTCTCTTGGGCATGTTGTCTCAACCAT 26900 25 100.0 40 ......................... AGGGGTACTCCCCTGGTTCCGAGAGGGCGTACCTGGTCCT 26965 25 100.0 41 ......................... ACGAGGAGGGGAAAGAGGGGAGGGAGGGCAGAGGACGGCAG 27031 25 100.0 39 ......................... CTTTCATAATTTCATCCTTCGGTTTTCTAAGCTGTTCAT 27095 25 100.0 40 ......................... GTTTTAGAGCGGCCTCCAGGCCGCTCTCCAGCCTCTCTAA 27160 25 100.0 36 ......................... TTTGATTTCCGGATTGTAGTTGTTAATCTTGTTCTT 27221 25 100.0 39 ......................... ATAACTTTGCGGGTCTTATTTTCTCACGTCTTAACTTCT 27285 25 100.0 42 ......................... TTCCGGTTCCCTTGGAGTAGGACTGGGCATATTGGAACAGGG 27352 25 100.0 40 ......................... GAAGGGCCCGCTCCCACCCCTCGTTTCCCCAGGCTTCCCA 27417 25 100.0 40 ......................... TATCATGCTCTTTATCAACAACTTTCTTGCAACTACAGTT 27482 25 100.0 35 ......................... CGTCGGAGTCCTCGTCCGAGGAGGTGGTGGGGGAG 27542 25 100.0 39 ......................... GTGTTTTCTGTTTTTCTCGCGTGGTTCTCAAGAAGGTCT 27606 25 100.0 40 ......................... TTACACCGCGAACGGAACGGCACAGTTCAACGCGTCCGCT 27671 25 100.0 35 ......................... TGTAGACCGTGTTCATGAGTATCTTTCGACAGTAA 27731 25 100.0 40 ......................... CTGAACAGGGGTACCCCTGGTTCAGGGAGAAACTTGTAAC 27796 25 100.0 41 ......................... ATTCTCAGTCTTCCAGCCCGGATCAGTCTAGCAGGTTCCGT 27862 25 100.0 39 ......................... CGGCAAGTACGGCGCCTTTTGGGTCAGCGGTCGGGCCCG 27926 25 100.0 39 ......................... CGATCAACCCTCCCTGCGACACGGTCTCCCCGGAAGGTA 27990 25 100.0 37 ......................... CGACCTCGGCCAATATACCGCTCCTCCGGAGTCCCCC 28052 25 100.0 41 ......................... GGTTTGTGCCACTTTCCCAGTTGTCGATAGTCACCCTCGAA 28118 25 100.0 40 ......................... TCTGAGCATCCATCAACCCACTGACAACACTGTGCCCCAT 28183 25 100.0 41 ......................... GCTCCGTCGCACTTCAAAGGGGGGAGAGAAGCATGGGAGGC 28249 25 100.0 42 ......................... AGGGGAGAGATGAGGGGAAGGGGAGAAGGGAGAAGGGGTTAG 28316 25 100.0 41 ......................... CTACCGTTATGCAATACGGGACGTACGGGTCTCGTCCGTGC 28382 25 100.0 41 ......................... CAGGACCAGTGCGAGGAAACTTAACGTAATGGGGTCAAGTG 28448 25 100.0 39 ......................... GTTCATGTCTAACGTGAAATCCATTCGGAAAAACTATAT 28512 25 100.0 38 ......................... AAACAGATTTTCATAGACTTCGGCGGCAACGAACCGAC 28575 25 100.0 38 ......................... TTTATAGGCGGAATTGAGCCTTTGTTCCCAATTGCGGG 28638 25 100.0 41 ......................... CGACTGGGAAATCAAATTCTTGCCATGTGTTGGCCGGAATT 28704 25 100.0 40 ......................... ATGTAAACTTTGTCAAAATCATAAAACCCCATATTTTTCA 28769 25 100.0 37 ......................... TACTCCCCGTCGTAAACAACGGGGAGGTTGGGAGTGG 28831 25 100.0 29 ......................... CATCCCAGCTCGGTGCCGCACCTGCGGCA Deletion [28885] 28885 25 100.0 40 ......................... TAACTCCCTCTCACTCTCATAGTATTCCGTGATCCGGCCC 28950 25 100.0 37 ......................... ATGGGAAAGAGGAATAAATTGGTAGGCATCTCCACTC 29012 25 100.0 36 ......................... AAACATATGGCGACCCTATCCTACCCTCGCCACCCC 29073 25 100.0 39 ......................... TCGTCCTCCGGGTCCTCGTCCGAGGAGGTGGAGGAGGAG 29137 25 100.0 40 ......................... ATTCCTCCCCCCGCTTTTCCTATAATCCTGAAACATGCAT 29202 25 100.0 41 ......................... GTGATCCGGCCCCCGTCGTTGTGGAATACGTACTTGAGCCG 29268 25 100.0 44 ......................... TACGGCGCGGCGAGGGTGACCACCCCCACCGCATACCTTCTCTT 29337 25 100.0 41 ......................... TTAAGTACGTGTGCCCCACATACACACCCGCCATCATCCTT 29403 25 100.0 40 ......................... TGTTTTCAACGTCCTGCGCCGTGACTTCGCGCCACGTGTC 29468 25 100.0 39 ......................... TTGTAAGTCGTATTGCGTCACCGAGTTCATCAGCACGTT 29532 25 100.0 40 ......................... TTCTCGAGGACCGAGCCCGAATTTACGGGCACTTTTTCTT 29597 25 100.0 39 ......................... CGTCGGAGGGGACGAGCTCCCAAACACTCGTCCCGTCCC 29661 25 100.0 41 ......................... TGGGGGGAAGGGGATAAATTGATAATTCGTCCCCCCCGCGT 29727 25 100.0 36 ......................... ACCCCGGTGTAGGTGGGAGTGGTGGGAGTGACGGTG 29788 25 100.0 40 ......................... TAGTCGACGTCCTCGATTCGAACATATGGACCTTCGCCGG 29853 25 100.0 39 ......................... CGAATTCGGCAAGCGTCATCACGTAGTCGTCGAGCCACG 29917 25 100.0 39 ......................... CTGAGCTCGCGCATGGGAAGACGGATGTTGCCGTATGTC 29981 25 100.0 41 ......................... TCTACCCCGGCAAATACGGCCTTTACTCCCTGTACGGGTAT 30047 25 100.0 41 ......................... CTTGCACGACAGGACGAGGACCTGTCGGTCCCCGTCCTTCA 30113 25 100.0 41 ......................... AACAATATCAGAGACAGTATACCAAAGTCAATAATTTCTTT 30179 25 100.0 41 ......................... CCGAGGTCGTACTGAGTCTCAGGAACGCAGGGGGCGCCGTG 30245 25 100.0 40 ......................... ATCACAACGTCGCAACCCTCCCTCACTTCCCATGCCTTTG 30310 25 100.0 37 ......................... GCACGATCCTGCCTTTGACGAAGTGATCCTTAGTTAT 30372 25 100.0 38 ......................... TCCTTTTGCGACCCACCCTCCACATCCTCAGCGACCGC 30435 25 100.0 41 ......................... CCTAACCCCACCCACCTAACCCTTTTTTTCCTTCTTCCCTT 30501 25 100.0 41 ......................... GCTCTTCGACTTGGTCGGGGTCGATGTACCACTTCACCAAT 30567 25 100.0 41 ......................... TAGTTCATGCTGCAAAACCCCCAGATTTCTTCGGAAACCTT 30633 25 100.0 41 ......................... ACCTCCCCTGGGGAGGGAGGCAAAGGCGTTTTTTCGATCTC 30699 25 100.0 41 ......................... GCTGCTTTCCACCCTGTTGGGGGTTCACGTGCCCACCAACA 30765 25 100.0 38 ......................... AGGTAGGGTCCACTGACCCATATCGTATCCTCAGTCTC 30828 25 100.0 42 ......................... TAGTTTATACAGGGTCTCTATATCCCCACTACTAAAAAATTG 30895 25 100.0 40 ......................... TTATACCCCAGGTAAGCGTACCTGGGGTACGTCACATACT 30960 25 100.0 39 ......................... GCGACCTCGAGGGCGTCCACGTGCCCGCGGAGGCGGCGA 31024 25 100.0 39 ......................... ATCATGGTCGTATTTCTCTTGCATACTTTTACATTCTTG 31088 25 100.0 40 ......................... TTAAGGGGTGCTTTCCGAGCCTCCCTTTCGAGAGGCGCTT 31153 25 100.0 39 ......................... TCCAGCAGCCCGTTAAGTTCCGAGCCCGAAACGGGCGCT 31217 25 100.0 43 ......................... TATCGCTGAAACGAAGCCATCGCTTATCAAGCCCTTGACTTCG 31285 25 100.0 40 ......................... CAAACAGAGGAGCCGTCCCACCAATGGGAGCGGGCTCCCC 31350 25 100.0 42 ......................... TCGCGGGGAGGCTAATTGCACTCTTCTCACGGTGGTATATAA 31417 25 100.0 40 ......................... ACCAATTCATCGCCCTCTCCCATTCCTTCACCCCGTATTG 31482 25 100.0 35 ......................... ACGATTGGAGCGAGGTGCCGGAAGACCTTCGCTAC 31542 25 100.0 37 ......................... AACTAACTGAGGCTCTTGCTCGAGGAGCCTCAGGATC 31604 25 100.0 41 ......................... CCGGGAAGGGGAGACAAGGGTTCTGTATGGAATTCCACTTT 31670 25 100.0 36 ......................... CTTTAAGGGCTTGTTCCAACCCTTCCTTCAAACGTT 31731 25 100.0 39 ......................... CCCTGAGGTCTTTGATGTACGTTTGCGCTTTCTCTCCGT 31795 25 100.0 40 ......................... TCTGCGGGTGCCTTTTCCTCTTGTTCTGACATTTTTCCTT 31860 25 100.0 41 ......................... CCACAAGAAGGGGTTGGCCTCTGGAATCTTATCGATCCGGT 31926 25 100.0 41 ......................... ATTCTGGAAAAAAATACGGAGGAAACTACCCTCCCTGTCAG 31992 25 100.0 40 ......................... ACCAGGAACGACAACCGAGTTTCCCTTAACGAGTTGGCAC 32057 25 100.0 40 ......................... ACAGTCTCCAGGTCCCTCTCATTAAAAAACTCGGGAAACC 32122 25 100.0 40 ......................... ATTTATACCGTATCTCCTAACAAGATACTTTTCAGCAAGG 32187 25 100.0 40 ......................... CGGTTACAGGTACGGGCCTTGTGGCCTCCGTCGGAGCCTG 32252 25 100.0 41 ......................... TGTGGTTGTAGTCCTAGTTCATGCTGCAAAAATCCCCAGAT 32318 25 100.0 39 ......................... TTCTCCCGCTGCCGTCCCCCCTGCCTCCTCCCTTTTTTT 32382 25 100.0 40 ......................... TCAAAGCCACCCCTTCCACCTGCCGGTAGTACTCCTCGAA 32447 25 100.0 38 ......................... AATGAGGGTGGTGGGAGCGGGCCCGCAGGGGAACCCGC 32510 25 100.0 39 ......................... GTTGCTCCCTCTCAATATGGAGTCGTGGGTGTGAAGTTG 32574 25 100.0 39 ......................... CTTATCTTGGTTCCACGTCGTGGCCCATACGACTCATAG 32638 25 100.0 40 ......................... CACAGTTCACATCCCTGTTTCCAGCAGGGATTTTTACCAT 32703 25 100.0 36 ......................... GAAACACCGAGAGATTGCCTTTGGAGGTGGCACCGA 32764 25 100.0 42 ......................... AATTCGTGAGTGAGGAAACTCCAGATTTCCTCACTTATCTTG 32831 25 100.0 35 ......................... ATGAGGGGAGAACCATGAACGTTCAACAATTAGTA 32891 25 100.0 39 ......................... GGGGCGAAGCGTAAACCGACCTGTAAGGCGACATCAACA 32955 25 100.0 36 ......................... GTTTCCATTCCTTCTGCACAATATGGGGTGAAGGAA 33016 25 100.0 41 ......................... ACCAACACCCCGGCCGTCTTAGGGTCGGCTTCTGGGGCGGT 33082 25 100.0 39 ......................... CCATATTGGAGTATTAATACGTGGGCACTTCGCTTGGTC 33146 25 100.0 40 ......................... CTTCGTTTCCCCAGGCTTCCCACCGAAGGTGGGCACAGCC 33211 25 100.0 40 ......................... GTTCGGAAGGAAGATGCCTAAATTGCCGCTCGAATCGAGT 33276 25 100.0 40 ......................... AGGATAATGATAATTTCGTGTGGTTGCAATCCCAATTCGT 33341 25 100.0 40 ......................... TACTCGTAACGTTGTCGGGAGGTTCGTCGTACCGTTCTCC 33406 25 100.0 39 ......................... TTATTGATTCGAACTATGTCCCCATTAGGAAGCTTTATG 33470 25 100.0 39 ......................... AGTACCTCTGGTGTTTCAGTACAAACGCGACGTGGAGGG 33534 25 100.0 39 ......................... CTGCCACTTCGTCTTGGGTGATTTTCTTCGAGGGATCGG 33598 25 100.0 40 ......................... TAAAGGGGGAGGTTGTGTATACCACTCCTAACATATTTTA 33663 25 100.0 38 ......................... ATGTGACCTGGGGCGGTATTTTTTCGTACAGGAAAGGC 33726 25 92.0 0 .....G.....A............. | ========== ====== ====== ====== ========================= ============================================ ================== 111 25 99.9 39 GAAGCATCCTAGAAGGAATTGAAAG # Left flank : GTTAGGAAGCATCCTAGAAGGAATTGAAAGTTAACCTCGGCAGATTTTCCAAGACATCATCAACCGAAGCATCCTAGAAGGAATTGAAAGGACATAGGCGGCGGCAGCAGCTATGACGACGGTTCCTACTGAAGCATCCTAGAAGGAATTGAAAGAAGACCCAACCTAATTCGGCGCCACAATGGCACCGAATGAAGCATCCTAGAAGGAATTGAAAGAGGATGCTTCAGGGGAGGCAGAGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTTTTTATATTACCTTCG # Right flank : GAACTTCGTAACGACGATGTCGAGTTTCACTTTTCCCTTATCTCTCCACATAAGTAGCCTGCGTCGACAATCCTCCTCCTTATTTCCCTCTCCACTTTCCCCAGGTCCAGGCCCTCATCGACCTTCGCGTAGGCTAGCCCTCCCTTGAGGTCCACCTTCACTTCCCAAACTCCCTTCACCCCGCTCAGAGCCTTGGTCACGTTGATCCTACACCCCTCACATTCCATACCTTTGACCTCAATTACTAACGACTTCATGTAGTTTGCTATAACTCACGACTTATTAAGACCTAAACTTACTCGCCCTTTACTTACTTGGGCCGAGTTAAGTATGGGGCAGTCGCTGTGTCCCGTGTACCTAGACGCCCACTTGAATAACGGGACGACGGACTTCCTCAGTTTCCTCCCCTCACTAGTTAGGGAGTAACTAACCCTGGGGGGCGAGTTACCCACTACGACCCTCTTCACTAGGCCCATGCTCTCCGTTTGTTTCAAGACGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //