Array 1 17493-14099 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCD01000072.1 Vibrio cholerae strain EDC_787 718_Vc_EDC_787_contigs_EDC787_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17492 28 100.0 32 ............................ AAGAAAAGCGCATGGCCGCAATGGTTGAAATG 17432 28 100.0 32 ............................ ATCCTCACCACCAAATCCTTGACCGTAAGATT 17372 28 100.0 32 ............................ AAGCCTCAGTAAGTGACACGCCGAAATGATGC 17312 28 100.0 32 ............................ GTCTGGAATGTTATTAGTCGGCCATACGTGAG 17252 28 100.0 32 ............................ AAATAATCCACCATCTGTTAACACAACAATTG 17192 28 100.0 32 ............................ GAAACTCATCGCGATTCTTACTTTCGTTTTCA 17132 28 100.0 32 ............................ ATTTGCTGCTCAGCCAACAGGATGCGCAGTTT 17072 28 100.0 33 ............................ TTTATCAGCAACGTGCTTTGCAACTGCTGCTAT 17011 28 100.0 32 ............................ TATCTCGCGGATGTTTTCAAATTCAGATGACA 16951 28 100.0 32 ............................ TTACGAAGTCGGCGAGAAGAACAAGCCTGAGC 16891 28 100.0 33 ............................ CAGCCGTGATACCTTGCTCTCGTTGCTCTGGAT 16830 28 100.0 33 ............................ CGAAGAAAACAAGCAGCTGCGTAAACTACTAAG 16769 28 100.0 32 ............................ AGTTCGCTCTTCCAACCATCGCGTTTGCAGCT 16709 28 100.0 32 ............................ TTTAAAAATATCGGTCGGTTGCGTACCGGGAT 16649 28 100.0 32 ............................ GTAAAGGTGAACCCATGAACATCTACGCACAA 16589 28 100.0 32 ............................ ATCATAACTTAGCATTTCAGCTTTAGCGTACA 16529 28 100.0 32 ............................ GCAATCAACAGTAAGAGGGGCTAGGGGGTAGA 16469 28 100.0 32 ............................ AAGGCGTAGGATTAAACCCCTTTTGAACTCGG 16409 28 100.0 33 ............................ CTTGAGGGTATATTTCACAAATCCACCCTTTGA 16348 28 100.0 32 ............................ CGAAACGGCGCTCAATGAAAAAGACCGGGTTC 16288 28 100.0 32 ............................ AATCGTTAATGGTATTTCGTCCAGATCATCGC 16228 28 100.0 32 ............................ AGCAGCGGCAGAAGATCGACGCATCAGGCAAA 16168 28 100.0 32 ............................ ACAAAAGAAAGTCCCAGAAAAATCAGTGCGTT 16108 28 100.0 32 ............................ AAAATACAGCACCTAAGATAACCCCGCACCAT 16048 28 100.0 32 ............................ CAGTGGCTAGAAGTCGGACGGAAAGTAAAAAA 15988 28 100.0 32 ............................ TTTTGAGCCAGATTTCTTTGGTCGCATTTATT 15928 28 100.0 32 ............................ TTAAAAGGTTTAGGCTATTAGATTATGTTATT 15868 28 100.0 32 ............................ TTAAATAATATCATCTTCAAACTCGCGCAACT 15808 28 100.0 32 ............................ TTTGCTGTGGCCATCATCTCAGCAATTCTTAC 15748 28 100.0 32 ............................ CTTGGCAGCTTCCCATCCTAGATTCCACCACT 15688 28 100.0 32 ............................ GTCAGCGCGAAATGCCAACGATGCAGGGGAGC 15628 28 100.0 32 ............................ TTAAAGCTTTCCAGCGCCGTGCGAAGGCCGCG 15568 28 100.0 32 ............................ AGTAGGTCGCCTCAACAACTCCAGTTCGAATT 15508 28 100.0 32 ............................ TTCAAACGCAAAGTCCGAGAATGGACGATGAG 15448 28 100.0 32 ............................ CAACAACGTGACGACCTTCCACAACACCTTTC 15388 28 100.0 32 ............................ TGGTTTAATGGTGTCTAAGAATGCATTGAATT 15328 28 100.0 32 ............................ TCTTTCTGATTTTTCGATAGTCTCTCTTTTGT 15268 28 100.0 32 ............................ GCTTGTTTATTTCTCCTGTCGATTCTGCGTAC 15208 28 100.0 32 ............................ AGAAGCGTTAACGGCTGCAACTAATCTGTCTG 15148 28 100.0 32 ............................ TCAAGGATTTTCGCAAGCTCCTTCTTCATGTT 15088 28 100.0 32 ............................ AATCGGCAGCAATATGCTCAATGAGCCGATCG 15028 28 100.0 32 ............................ TCGCGCACAAACGACTGACTAGCATCGCCGTA 14968 28 100.0 32 ............................ AAATTTTGGGAGACTGAGACGCAACAAAGATT 14908 28 100.0 32 ............................ ATTTTGAAGCGATTCAGCGTGCATTCGAGAAT 14848 28 100.0 32 ............................ GATAAACTCTTCATCGAACAATGCAAACACAT 14788 28 100.0 32 ............................ ACATGCCACGAACTGCAAGCCGCCTCACTCTA 14728 28 100.0 32 ............................ GTTTCGCCCCAAGGAAAGCGTATTGTTCCTCG 14668 28 100.0 32 ............................ TGACGTGTTTTTAGACATACCTCGCTCGATAC 14608 28 100.0 32 ............................ ATTCGGCCAATGAAACCCACCTTTTGTTACCA 14548 28 100.0 32 ............................ TCAACCATGACAGCTTTACCAATCAGCTTACC 14488 28 100.0 32 ............................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 14428 28 100.0 32 ............................ AGATCGATGGTCGATGCGACAAGTACGGTGAT 14368 28 100.0 32 ............................ TGATCTTTAAACTCACGCGAGAAGTTCACCAA 14308 28 100.0 33 ............................ GTTCCAAACATCTACCGCGTCATTCGGGTATTT 14247 28 100.0 32 ............................ ATGCCGACACTTCGCCCGCCGTAAGTAACGGT 14187 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 14127 28 82.1 0 ...........A..C.A.....G.A... | T [14107] ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCCAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGACACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGACTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTCTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 65750-60080 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCD01000052.1 Vibrio cholerae strain EDC_787 718_Vc_EDC_787_contigs_EDC787_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65749 28 100.0 32 ............................ GTCTGGCGCAGTCCACTCGCTATTAAATGGAC 65689 28 100.0 32 ............................ TGTCAGCTCGATTGCTTCTGCCACTTACTCAG 65629 28 100.0 32 ............................ CGAATGAAACGCTGAACCTCCTGCCTTGGCTG 65569 28 100.0 32 ............................ TAGCCCCACTTGAAATGCCGAATGAAACGCTG 65509 28 100.0 32 ............................ TCTTCGAGCTTTTTCATTAGCTGATTTCGGTC 65449 28 100.0 32 ............................ GTGAGACGGGAGTGTCAAAGTTTAGAATCTCA 65389 28 100.0 32 ............................ TAACAACCATCATCACGCAAATAAAAGAAGAC 65329 28 100.0 32 ............................ TTTTGGCTGTTCCTGTTCATGATTAGGAGGCA 65269 28 100.0 32 ............................ ACCACCGCCAGCCGCTTTGTACTCGTCAAACG 65209 28 100.0 32 ............................ ATCTTGGCGCGTTAATACTCATCGATGAAGCT 65149 28 100.0 32 ............................ TTTCTTGGTATCGATGCCTTTTCTGAATATCT 65089 28 100.0 32 ............................ TTTTGGCTGTTCCTGTTCATGATTAGGAGGCA 65029 28 100.0 32 ............................ TGAACTTCCGCTATGTCGGAAGCATCAAGAAT 64969 28 100.0 32 ............................ ATTACCGCCGCCACCGCCAGAACCGGAAGCAA 64909 28 100.0 32 ............................ CTCCACTACTTCATAAATATCATTAAAGAAAG 64849 28 100.0 32 ............................ TTCTGACTCTAGTGAATTGCAGGCTTATGTGA 64789 28 100.0 32 ............................ GTATAAGAACGCGTTAATTTACGCATTCAAAA 64729 28 100.0 33 ............................ AAGCCTCGCAAAGCATAGTTATCGATTTTAAAA 64668 28 100.0 32 ............................ GTCCTGATGTGGTTCAACAATTCGCATCCCGT 64608 28 100.0 32 ............................ TAAATGCAACGCTGACCAAATTCTCAACCCTG 64548 28 100.0 32 ............................ TTTCTAAAAATATCGATGGTAAGCACATCGAT 64488 28 100.0 32 ............................ ACGCAGACGAACAAACATTTCGCCACGGCGAA 64428 28 100.0 32 ............................ TTTCAAAAGCTGCTTGAAAGTGGCGAGTTGTC 64368 28 100.0 32 ............................ AGTTTTTCCAGTGCGCATCCTTGGCGCTAATC 64308 28 100.0 32 ............................ AAACACCCATCAAATGAGCATGCGCGGCCTTC 64248 28 100.0 32 ............................ CCTCTAGTGCCTCGATTAGCGGTGAAAATGCT 64188 28 100.0 32 ............................ ATGATGAAACTCCTTTGTTTGTATGCATTAAG 64128 28 100.0 33 ............................ TAGAATCCTATCCGGGGATGTCTGGTATTGTGT 64067 28 100.0 32 ............................ GAAACTCCTGACTATAAAGAAATCGTCAAATT 64007 28 100.0 32 ............................ AATTACCCCACCGATTTACACCGAGGGTATTT 63947 28 100.0 32 ............................ TGTAGTTTCTGACTTTTACGATATTTACCGAA 63887 28 100.0 32 ............................ GACAGAACGATTAGAGCAATCAATAAATTGCA 63827 28 100.0 32 ............................ GCGCATAAAGTTGGCCGCCCCTTCGAGTTCTT 63767 28 100.0 32 ............................ GTAATCGGCGCATTACTTGGCGCTTTTGTAAC 63707 28 100.0 32 ............................ ATTACCTGAAAGATAAAAATTTAATCCGTAAT 63647 28 100.0 32 ............................ ACTTGAACATTCTCCTTTTCAGAAACCACGGC 63587 28 100.0 32 ............................ GGTTAAGGCTGGTGCAGGTCAGTGGAACTTCA 63527 28 100.0 32 ............................ GTTGATAAGTGGATGCTCTGGGGCACTGATTT 63467 28 100.0 32 ............................ AATTTGGTTAATGCCTCCAAGCTCAAAGATAA 63407 28 100.0 32 ............................ CTGCCGGAGTGTTTACCTCAATCAATGATTTC 63347 28 100.0 32 ............................ TTCCATCCTGAACCCGTGCCACTCATCACCGA 63287 28 100.0 32 ............................ TTCACCCTCACCCTCGCCACCGGAACCACCAC 63227 28 100.0 32 ............................ TAATACGCACTTAAAGATAGCCTCACTATGGG 63167 28 100.0 32 ............................ ACTTGTGAGTCAGTTCCAAATCAAACGCGCCT 63107 28 100.0 32 ............................ TTCTGACCCTAACTCTTTATAGGTGATGTATG 63047 28 100.0 32 ............................ ACTAAGCGCGCTAGGCCATTGCGCCACACGCT 62987 28 100.0 32 ............................ AAACAAGACTTGGTGGATCGTGATGAACAGAT 62927 28 100.0 32 ............................ ACATCATCAATCGCATCTCCGACTTTTAAGCC 62867 28 100.0 32 ............................ ACTCAAGACCCTGAAAGCGTAGATAAGCAAAT 62807 28 100.0 32 ............................ TTGCCTAAAGGGTTGCGCCATGCCTTCGGGGA 62747 28 100.0 32 ............................ TAGCACCAGAATTTTTTGCGCTTGGGCTGGCG 62687 28 100.0 32 ............................ TCAATGGGACAAGATCGCGACTAAAGTGCCGA 62627 28 100.0 32 ............................ TGGCACAACGGCTTGACCCGTTGCCACGTCTT 62567 28 100.0 32 ............................ CATTCGATGTAGAGCATTCAACCCATATCAAA 62507 28 100.0 32 ............................ GCCATTCGAGGCGGTTTCTGTTATTTAGGTGC 62447 28 100.0 32 ............................ AGCGCTTCACTAAAAAGCGCCCATTCGATGTA 62387 28 100.0 32 ............................ ACTAAGCGCGCTAGGCCATTGCGCCACACGCT 62327 28 100.0 32 ............................ TTTACATGCCTTTTTGCTTTCTGGCGCGTTAG 62267 28 100.0 32 ............................ TTTAGTCTTTAGTGATTCCTGCTGCGGGACTC 62207 28 100.0 32 ............................ TGCACCGTTAACAACTAATGACTTAACCCAAT 62147 28 100.0 32 ............................ GTACCGCGATGTGGTAGGCGTTCTTACCGTCT 62087 28 100.0 32 ............................ ACAAAGGTTAAGATTTCTTTGTTGCCATCGTC 62027 28 100.0 32 ............................ AGGCAAAGTGATTCTTCTTTGTTGAGTAAAAT 61967 28 100.0 32 ............................ CGTGCGCGATGACATTCTGGGATTGGATGAAG 61907 28 100.0 32 ............................ CAAAACGTATCCCAACTCTATCAATTTGAGCA 61847 28 100.0 32 ............................ GCCAATTCCGACAAGGCCGCACTCAACTTGTC 61787 28 100.0 32 ............................ TTTTAACAGCAATTCGTTGTAGTTTTCGTTAG 61727 28 100.0 32 ............................ ATTAATGCCAACGGTTACAGGCTTGGTTGTGA 61667 28 100.0 32 ............................ GGTTTCGTCTGATATGTCGCCGTCCATCGCGT 61607 28 100.0 32 ............................ CTGTACTGTTTTGGGCGAAATAATGCCCGCCG 61547 28 100.0 32 ............................ GAAGAACAAACCGAAGAAGAGGGCGACCCAGC 61487 28 100.0 32 ............................ ATATGGCGCTCGATTTGTTCCAAGGTAGAGCA 61427 28 100.0 32 ............................ TCTATCGAGTGTACGCCTCCGGTTAAGTTCTC 61367 28 100.0 32 ............................ TATTTGTGGCATCAAGTGTTTTCATGCCGATA 61307 28 100.0 32 ............................ GCAACCTGTTTGATGCATCGGAAGGTGTCAGC 61247 28 100.0 32 ............................ GATTTGTTTTTGCGCAAATGGGTTGGCATAGC 61187 28 100.0 32 ............................ ATCTGATACCAGTGAGCGATAGAGGCGAAATA 61127 28 100.0 32 ............................ TGGTGCATCCAAAACACTTAACTCACTGGTTG 61067 28 100.0 32 ............................ CATTAGCGAGTCATCCTGTAAAGAACGAGGCC 61007 28 100.0 32 ............................ GATTGATTGGGGCGCATAATGATTTATCTCAG 60947 28 100.0 32 ............................ ATTGAAATGTTCTGAACGATGAAAATCACATC 60887 28 100.0 32 ............................ AGTTGAGCCAGTTCCAGACCCTGACAACCCAA 60827 28 100.0 32 ............................ TTTGGCCGTAATAAGAGATCACTTTCTGCCAT 60767 28 100.0 32 ............................ AGTTCAAAAAAGTACACAAAGCCGCCCGTCGA 60707 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 60647 28 100.0 32 ............................ ATTAGTGGTGCGAAGATGTGAAATGAGCGTGG 60587 28 100.0 32 ............................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 60527 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 60467 28 100.0 32 ............................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 60407 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 60347 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 60287 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 60227 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 60167 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 60107 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 95 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGATTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //