Array 1 9603-7531 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPD01000004.1 Helicobacter pullorum strain NAP3W17 contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 9602 36 100.0 41 .................................... CTTTTCTAGACCAATGGTCTCCATGAGTTTCTGACTTTTTA 9525 36 100.0 37 .................................... AAATCATAATATTTGGAGCTGTAATTGCATTTTTTTC 9452 36 100.0 38 .................................... CTGTATTAAGAAAAGATCATAAAGTAGTATTATTTAAT 9378 36 100.0 35 .................................... TTATAGCAGGTATAATTTTGTTATATTCTAAATTA 9307 36 100.0 35 .................................... ATCTCTTAACTTTAAAACACCGTATCCTTTAGTAT 9236 36 100.0 35 .................................... GATGCAGATGCTGTAAATGAGTTATCGGCTTCTAA 9165 36 100.0 35 .................................... AGATATATTAGTCTAGCATTATGAAATAACTTATA 9094 36 100.0 33 .................................... TTGTATAGTAATGGTAATACCGCTGCTAATCCA 9025 36 100.0 33 .................................... TAGAATTACATACATCATTTTCAATCCTTTTTC 8956 36 100.0 38 .................................... TTTTTTAATAAAGGTAGCTTTATCTTGTTCGGAGTACA 8882 36 100.0 37 .................................... AAATCATAATATTTGGAGCTGTAATTGCATTTTTTTC 8809 36 97.2 36 ......................G............. CTGAATTGCTTCGTCGGTATCTGCTACGTTGTCCAT 8737 36 100.0 34 .................................... TTTTCAATGTCTTCACGAATTGAAGCCCTGTGAA 8667 36 100.0 36 .................................... CATAGTCATACACACACAAAGTCACGGAATACTAAC 8595 36 100.0 35 .................................... ATAGAGCAAATAGGACATTCCAATACCCATAATGG 8524 36 97.2 38 ......................G............. CTGGGGAATTAGTGCGCAACGAAGAAGGGCAGCCGATA 8450 36 97.2 43 ......................G............. CATGTTAATCTGGCTTTATGAAACAACTCGTAATTACGTTGAG 8371 36 97.2 36 ......................G............. TTCTCTAATTAGTGTAATATATACTTCGTCTATGTA 8299 36 97.2 34 ......................G............. TTGTAAATCATTATACTTTTGATAAATTCTTGAT 8229 36 97.2 37 ......................G............. ACTACTTATAAGTTCCATGATTGGACTAGTAAAGAAG 8156 35 97.2 37 ..................-................. CAAAAGTTTGTAATACATTGTTCTAAATATTTCTTTT 8084 36 97.2 39 ......................G............. TTTGCATTTGAATTCGTATTCTTTAAAATATTTGTTAGG 8009 36 100.0 41 .................................... TTTATCAACACCACATTTTTAATTTCTGAATTATGTTTTTC 7932 36 100.0 39 .................................... AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 7857 36 97.2 34 ......................G............. ACCATAATTAGCATAAGGATTGATAGGCATTAAC 7787 36 97.2 39 ......................G............. AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 7712 36 97.2 39 ......................G............. TCTCCAGCAAGCTAGATGTTGTCCAAAGTTGTGAGCAGG 7637 36 100.0 34 .................................... AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 7567 36 72.2 0 ............A...TAT.....AA..T....TTT | C [7534] ========== ====== ====== ====== ==================================== =========================================== ================== 29 36 98.0 37 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTACTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTGTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCACAAAATGTATTGAAAAACGAATAAGAAAAATACTGCCATTCTACGCAAATCCACACTCAGAAAGCTCCTCGCATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAACCTAGAAAATCTCGAGAAATCTCTTTTGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7536-9421 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPD01000005.1 Helicobacter pullorum strain NAP3W17 contig005, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7536 36 100.0 29 .................................... TTTAATTGTTCCAAAAGTATGACGCCTAG 7601 36 100.0 30 .................................... TGCAGATGTATTGGGACAAGCTAATGGCGG 7667 36 100.0 30 .................................... CCCACGCCCTCCATAATATACAAGTATTCT 7733 36 100.0 30 .................................... TCGGATTCTTCTTATAGCAGTGCTTATGGA 7799 36 100.0 30 .................................... GAAACCGCAAATCAGACAATGGCTCGTTTG 7865 36 100.0 30 .................................... TAGATAGCTTAACCTTACTAAATCGTTATT 7931 36 100.0 30 .................................... GCGTAACCGCTTAACAAAACTCGATAAATG 7997 36 100.0 30 .................................... CCTGTATCATCAGATGCGTAGATAACTAAT 8063 36 100.0 30 .................................... AACACAACGCTAAAAGTGGCTTTTGTTGGT 8129 36 100.0 30 .................................... TTCACAAATTGTTTTAATTGGTTTTTGATT 8195 36 100.0 30 .................................... ATTTCTTTTCTTTATCTTTGCTTCTCTGAA 8261 36 100.0 29 .................................... GCAGTAGGTGACGCTGTTAAACTTTCTCA 8326 36 100.0 30 .................................... GCTAGAGGACAAGGTTCTGGTTTTAATGTT 8392 36 100.0 30 .................................... GTAAATTTCACTAGCTACTATATAAGCTTT 8458 36 100.0 30 .................................... TTGTGGTATAGGAAGCCCTTCATTTTTGAA 8524 36 100.0 30 .................................... CAAAAGGTGGTAACTCGTCTGTTACTGTTA 8590 36 100.0 31 .................................... TATTGGTATGTTCCATATAGGATTTTATGGG 8657 36 100.0 30 .................................... TATTTTCCAATTTCTAATAATTCAACTTCT 8723 36 100.0 29 .................................... CACCTTCACCATGAGTATATAAAGCATCA 8788 36 100.0 30 .................................... AAATAGCTCTAAAATGATTATATTGCTAAA 8854 36 100.0 29 .................................... TTTGATTAGCATAAGCTTGGTTGCGTTTA 8919 36 100.0 31 .................................... TATTAGCACAATATTTTTAATTTCCACATTA 8986 36 100.0 30 .................................... TACACTCCTTATCTCCAAATAGGCAAACAC 9052 36 100.0 30 .................................... ACATGAGTTCACATACAAAACCGCTTTTTG 9118 36 100.0 30 .................................... AGCTATATCTTTTAGATTAATATCACCTGT 9184 36 100.0 30 .................................... CAGATGAAACAAATACTGTGCGAGACCAAA 9250 36 100.0 30 .................................... CAATCTCTTTAGCAGAAGCAAGAGCAAAAG 9316 36 100.0 29 .................................... TGAGATTTATGTCATTCAAGCTACGCCAA 9381 36 91.7 0 .........................CC....C.... | AT,AG,T [9404,9412,9415] ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.7 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGAGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTACTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGTGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGCAGTTTTTGATTGCTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGCGGTGAAAAATTAATAGAGTTTTAGATTGTCTTATTTTTTGGGGTTTTTCGTAATTTAGACTAAAAAAGCAAGGATAACACACTACAAGATTCAAACAAATATTTTAAGATTTGAAGGAAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGCACGATACTTTTAGCAAGCAAAGATGATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGACGATGAATCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTGGACTTGGCACCTAATGGAAGTGTGTTTGCTACAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //