Array 1 91625-91429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVHC01000003.1 Staphylococcus aureus strain UK13136 isolate A0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 91624 25 96.0 31 .....................C... AGCTGACAGAAAGTCAGCTTACAATAATGTG 91568 25 100.0 30 ......................... GAATTTCAAAAAGAAATTCTACAGACAATG 91513 25 96.0 31 .....................C... AGGTGACGAAAAGTCAGCATACAATAATGTG AAGG [91502] 91453 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================== ================== 4 25 98.0 31 CAAGTTGGCGGGGCCCCAACATAGA # Left flank : CACTTTGAAATCGATCCTGTAGAACCAAAATATTTTGGGGAAGTAGCAAAATATTATCGCCATAAGGATAATGGTGTTCAATTTGGTTTGATTACAAGTGTTTCACAATCATTTTGTTCTACATGTACACGCGCAAGGCTGTCATCAGATGGGAAGTTTTACGGATGTTTATTTGCAACTGTCGATGGATTTAACGTTAAAGCGTTTATTCGTTCTGGCGTGACCGACGAAGAATTAAAAGAACAATTTAAAGCTTTATGGCAAATAAGAGATGATCGATATTCAGATGAGAGAACTGCTCAAACAGTTGCCAATCGTCAACGTAAAAAGATAAACATGAATTATATTGGTGGTTAATGTGTAGGGACCACTACATATTAAATCATTAGAGATGTTTTAATATTTCTGTCTTACTCCCTAAAATACAATATTATTTATTAAAGTAAAAACGGTCATATCTATGCCAGATTTAATAGAAATGATCGTTTTTAAAGTTTTTA # Right flank : GAATTTCAAAAGAAATTCTACAGACAATGCAAGTTGGGGATCAACGAAATAAATTTTATGAGAATATCATTTCTATCCCACTCTTAAGAATCACTACATAATAAATCTTTAGTGGTTCTTTAACATTGATGTCACACTCCATGCCATTGAGTTGTAATATATCTTTTTTAGGTATAAATGTTGTCGAATAAACAACAAGTTGTCCAAAAGATATAAATCTAAACAAGATATAGCCAGCAATTTAATATTTGTAATAGATAAAATGCTAAGTTTGATATATAATAAATTTAAGTAATTGTATAATAATATGAATTACAAACATCTAAGAAGAAACATAGGAGGCATCATATTATGAGTAATAAAGTTCAACGTTTTATAGAAGCAGAAAGGGAGTTAAGTCAGTTAAAGCACTGGTTAAAAACAACACATAAGATTTCAATTGAAGAATTTGTAGTCCTTTTTAAAGTGTATGAAGCTGAAAAGATTAGCGGTAAAGAATT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTGGCGGGGCCCCAACATAGA # Alternate repeat : CAAGTTGGCGGGGCCCCAACACAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 599548-599351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CVHC01000001.1 Staphylococcus aureus strain UK13136 isolate A0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================= ================== 599547 27 100.0 27 ........................... TTGTCTGTAGAAATTGGGAATCCAATT 599493 27 100.0 29 ........................... CATTATTGTAAGCTGACTTTTCGTCAGCT CA [599490] 599435 27 92.6 28 ...G............C.......... TTGTCTGTAGAATTTCTTTTTGAAATTC A [599420] 599379 27 92.6 0 .....................A...A. | T,T [599358,599360] ========== ====== ====== ====== =========================== ============================= ================== 4 27 96.3 28 TCTATGTTGGGGCCCCGCCAACTTGCA # Left flank : TCTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCATAAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGAGAAGCGTTAATAAAAAATAAAATATTATATAACGAAAATCGTAATAAAGGTAAGCTTAAGATCACCGGTGGCGGTAATAACTACACTATTGATTTAAGCAAAAGATTACATTCAGATCTAGCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTCCTCTTTGATTAGTATATGAAGGTGACTTATACTTCATGCACTTTAATTCCAAATCAGATTATTTAAATGATAATTTTTAAAGTGTATGATGTATATAATAGGTAAAATTTTCTATATATTTAAATGGAATTGGGAGTAGGAATGTGACAGAAATAGTATTTTATAAAATTTATTTCGTTGTCACTCCCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCT # Right flank : AAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTATTCCTTCATTTAATGATTAAATTATTATAGCAATACTTTATTGTCCCATGATTAGTGTTCTTTTAATGAGACATAGTAACTATAAAGTTTAATAATCGTTCTAAATCTAGCATCTTCTAGTTTGGTTTTCCCATTTCTTAAATCTTGTACTGTTTGATATGGAACTCCTGAATTTTTCGAAATTTTATAGCCTGATTCAGACTCAAACAAAGATTGAAGAGAGTTTATAATATTATTCAACTCTGTCATTTTTAATCCCCTTTCTTGAATTAACAATATACAATGTTGTTATTAAAACAGTCAGTGTATGGATGATTTCATTTCCTAAAAATATATTCAGCCATATAATAATAAGAAATACGATATAAAATAGTTTCATTTTAATCCCCTATCATATTTTTATTAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTATGTTGGGGCCCCGCCAACTTGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //