Array 1 163-1716 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVW01000073.1 Nocardiopsis sp. FR6 contig073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 163 28 100.0 33 ............................ CCATCACACGACGAGCGTGCGATGATCCGTCCA 224 28 100.0 33 ............................ GCAGGTGCCGGGCCAGCCGCGCGGCCTGGTGCC 285 28 100.0 33 ............................ GGTCACCAGCGACCACGACGAGTGCATCCGCCG 346 28 100.0 33 ............................ GGCAAGAACAGCCCTAGAGTCGCCCTCCGCGTT 407 28 100.0 33 ............................ GGCCCAGGACCCCCATCTGGAGCTGTGGCCGGA 468 28 100.0 33 ............................ CTCCGGGGCCACCGACAAGAACACCGAGGCGGG 529 28 100.0 33 ............................ CCGGGGCGTGTTCGGGTTCACCGACCGGTCCGG 590 28 100.0 33 ............................ TTCGGCGTGGTCGTGGGTGCGGGACAAGACGTC 651 28 100.0 34 ............................ GGTTCACTTATCGGAGGTGAGAACCCGCCCGTTC 713 28 100.0 33 ............................ GACAGACGCCGCCTAGAAACGCCAAATGGCCCC 774 28 100.0 33 ............................ TACATGACCTCGGAGTTGGCCCATACCGCGGAA 835 28 100.0 33 ............................ GGTGTCAGCGGGTACCTGCTGCGGTTGATGGCG 896 28 100.0 33 ............................ GCGGCGCGAGCGGGTGTGCCCGGAGTGCCGGCG 957 28 100.0 33 ............................ GACCATCCGGACCTACTGCGAGGCGGCCGCCTG 1018 28 100.0 33 ............................ TACATGACCTCGGAGTTGGCCCATACCGCGGAA 1079 28 100.0 33 ............................ CAAGACCGATGACGGCCAGCAGGTCACCACGGC 1140 28 100.0 32 ............................ CCCCGAAGAAAAAACCCTCTGGCGCGACCACT 1200 28 100.0 33 ............................ GAAGGGTCTCCCGGAAGGCCCGGTCCAGATCCG 1261 28 96.4 33 ..........................T. TTCCGGCGGCCCCTGGAAGAAGCCCCCTGGGAA 1322 28 89.3 33 ...........G....T....A...... CGGCGCCGCGAACAGCAGCTACAAGGACCTCGG 1383 28 89.3 33 ...........G.....A...A...... CTGCTGCGGGAGCAGCTGTCGGAGGCCGCCGAC 1444 28 92.9 34 ...........G.........A...... GATGCAGGGCACCATGAGCGGCACCGACTCGTGG 1506 28 96.4 33 .....................A...... CGGCCCGCACCGCCTCCGTGCATCGGAGTACCC 1567 28 100.0 33 ............................ CAAGGAGGTCCGCTTCGCCTGGCTGCTCAACCG 1628 28 96.4 33 ................T........... GGTGGCGGTCGCGCCGTCGTAGTGGAAGCCGTA 1689 28 85.7 0 ...........G.........A..CC.. | ========== ====== ====== ====== ============================ ================================== ================== 26 28 97.9 33 CTCGTCCCCGCACCTGCGGGGGTAGTCC # Left flank : TCTGCTCTGATCGGTGCAAACGGCGGATCTCCGCCCAGTCCTCCACAGTGATCACCTTCCTGATCATCAGCAGAGGGGGTCAGATTTCGGACGACGCTACGGGGTCAGTATTCACGTGTCGCCGACACCCCCCACCGGCCGCACCGGCAGGACAGGGAGGAAC # Right flank : CCGGACCGAGCCGACCTCGTTCTCACAGACGCGGGGTAACCCCGATCGGATCCAGTCTCCTCACAGGTTCCCTTTGTCCACGCAAGAATGGGGGAGCCTGATAATTGCCAATGTGTTGCCTGAATATTGGATTACAAATGACCATTATTCATGGCATTGGTGCCCATGGGGGCACTTGGTGCCAATAAGTATTATCTGTCCGTTTTTGTGGTTCTGTCCAAATGTTGATAGTAGAAGGAAAGCGATCAAAATGATCTCTGCCTCGATGTTCATGTCGGCAGCCTACCCTTCCCGTTGAAGATGAACAATCCTGCGCTTCCTGTAGAGCGATAGCTGGGCTTGCGGTGGTTGAAATTTTATTATTTATGACTTTTGGGGCATTTGTGAGGTTGCTCCTTCCTAATTTTTGATGATAATGGTGAAGTTCCCGCGCCTGCGGGAGTGGTCCTCCTGCACTTCCAGTGTTGGACTCGTCCCCGCGCCTGCGGGGGAGACTGTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACCTGCGGGGGTAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102053-102325 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVW01000011.1 Nocardiopsis sp. FR6 contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102053 29 100.0 32 ............................. TGCACCGCGTGGCGCCACTTGCGCGCCAGCAG 102114 29 100.0 32 ............................. GCCTACAGCACCCCGCCCGGCGAGTACTGGCT 102175 29 100.0 32 ............................. GCCTGCACCAGCTCGCACACACCAGCTACCTG 102236 29 100.0 32 ............................. CCGTCCCGGGAGAGCAGGAACCGGCGCGGTGG 102297 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGAAGCCCACGCGCGCACGGGGTGACCG # Left flank : GACAAGCCGGGAACGAATGTGCGAGCCAAGGCCGGGCTGAACCGGTCCATCTTGGACGCAGCCCCTGGAGAGCTACGCCGTCAGTTGGAATACAAGACTTCCTGGTACGGGTCCCAGCTTGCGCTCTGTGATCGCTGGTTCCCCTCCAGCAAGACCTGTTCGGCATGTGGGTGGCAAAACCCAAGCCTCTCCTTGTCCGAGCGGGTGTTCGTCTGTGCCGAGTGCGGGTTGCGAATCGACCGTGATCTGAACGCGGCGCGCAACATCGCCGCTCACGCGGAAGTGCCGTCTGGCGCCGGTGCCCCTGGTAGAGGGGAGTCCGTGAACGCCCGTGGAGGTCGTGTCAGTCCCCAGTTCTCTCGGGAGCTTGGGCAGCGTCCGTCGAAGCGGGAAGACGCTGGTCTCAAAGGGCCAGCGCCACCTCGGCGGAGCAATCCGCCGACATCCCTAACGCGTGTCTCAGGAACATAACGCCCTTACTGCGGTGCAGGTCAGTCGCT # Right flank : GTCCACCGGGAGGCACCGGCCGCGTACGAGACACGTGAGGTCCAAAACCGGTTTGAACCGCTTCATCCTGGATGCAGCTCCAGCAGAGTTGCGTCGCCAGTTGGAATACAAGACGTCCTGGTACGGATCCCAGCTCTCGCTCTGCGATCGCTGGTTCCCCTCCAGCCAGACCTGCTCGGGATGTGGGTGGCGAAACCCAGGCTTATCGAAAGCCAGAAGGCCGATGGCGGATTCGGCGTAGCAGATGTCTAACCTGGAGCCGCCCCTCCTCGAAAGAACCCGGAGCATCCCTCGTGCGTCTTCTCGCCCCCATCGCGCTGTCCCTGGTGTTGATCACCGCCTGCGCAGCCCCACCTGCCCCAGAGCCGGTCACCACCCCCGAACCAACCGCCGAACCAGCTCCCAGTGCCTCGGCCGAGACCACACCGACCCCGGAGGAAGAGCGCGCCGCCACCATCGCCGAACTGGAGGAGCAGTGGCCCGGAGCTGAGGAGTTCATC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGCCCACGCGCGCACGGGGTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1926-128 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVW01000049.1 Nocardiopsis sp. FR6 contig049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1925 28 100.0 33 ............................ GTAGGCCAGGATCCGGGCGGGCAGGGATCGGAA 1864 28 100.0 33 ............................ CTCGCCCGCGCCATCGCCCGCGGCCTGCCCGAC 1803 28 100.0 33 ............................ CACCGTGCCCAACCTCGACGCGGCCACCGACTA 1742 28 100.0 33 ............................ GAGCACGAAGGCCGCGGCCGTCCTGCGCAACGT 1681 28 100.0 33 ............................ GACCTCATGACGACCTACGGCGTCACCGACCCG 1620 28 100.0 33 ............................ GAGATCGAGCGCATCGTCGCCGTCCGCGTGAGA 1559 28 100.0 33 ............................ GGCCTCTCCCCCCAAGTCGCTCCCCGGCGCGCG 1498 28 100.0 33 ............................ GCTGGTGCTCTGGGTCGGCGATGAGGCCATGAA 1437 28 100.0 33 ............................ GCAGGCCGCATGGCCACTGCTCACCAAGGGTTC 1376 28 100.0 33 ............................ CACCCGCATGCCCGACCCCTCACCCGACTGCGT 1315 28 100.0 33 ............................ TGTGCCCGCCAGCTCCTTCGCCAGCCACGATCG 1254 28 100.0 33 ............................ GCCAGCCGACCTCGGAGCACGATCATCGCGGTG 1193 28 100.0 33 ............................ CGCCGTGGGCATGTCCGAGATGGCCGACCGCAT 1132 28 100.0 33 ............................ GGGCGAGGCGGACATCCCGAGCGCCTCGGACGG 1071 28 100.0 33 ............................ CCACAACGACGACGCCCTGCGCGTCCACGAGGT 1010 28 100.0 33 ............................ GTACCGCGGCTACCGCGAGTGCGCCCAGATCCT 949 28 100.0 33 ............................ CCGCGGCCGAGTTCAGCGCCGCCGCCTATGCCC 888 28 100.0 33 ............................ TGAGGAGGCACGGCAACCGCGCCGGGGAGCGAC 827 28 100.0 33 ............................ GAGGCTCTGACGCTCGCTGGGGAGCGCCGCCCG 766 28 100.0 33 ............................ GAACCCCGTCCGCTTCGACATGCGCTCGACGCA 705 28 100.0 33 ............................ GAACCCCGTCCGCTTCGACATGCGCTCGACGCA 644 28 100.0 33 ............................ GCCCCGCACCATCAGGTACGGGGCTGGTCAGGT 583 28 100.0 33 ............................ CGACTGGCCCGGCCGGGATGAGTACCTGGAGAT 522 28 100.0 33 ............................ GCTTCCGCCCTGCTTGCCGCGGTGGCGCAGAAC 461 28 100.0 33 ............................ GGGGTCGTAGAGGACCCTGAGGGGCGGCGTGAG 400 28 100.0 33 ............................ GGACACCGAGCAGCGCTCCTGGCTGTTCGACCC 339 28 100.0 33 ............................ CGAGAGGTGACATGCCCTCCCTGCTCACACCCC 278 28 100.0 34 ............................ CGTGTCCAGCGACAGCGGACGTGGCTCATCTTGC 216 28 100.0 33 ............................ CTCGGCGTGGCACACCTGGCAGCTATCTCCGTC 155 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 CTCGTCCCCGCACCTGCGGGGGTAGTCC # Left flank : GTGACATCAAGGACCTTCTACTGCCTGAAGACGAAGAGCTCATCGACCGCGACCTCAGCGGCCTGTGGGACGAAAAACAAGGAGTGGTCGAGGGCGGCGTCAACTGGGGAGACGACATCTTCGACCCAGGAGGCTTCATCTCCATCGTCGGCCCAGAAATCCCCGAACCTCCCACGGACGGTTCCACCGAAAGGAACCCGCAGTGACGGTCGTGGTGCTCATTGCCGCTCCCGAAGGGCTCCGGGGACACCCTGACTAGGTGGATGGTCGAAACCGCTCCCGGGGTCTTCATCGGCACCCCAGGTCGACGAGTCAGAGACCGCTTCTGGGAAGTACTGGCGGAACGAATCGGAGACGGTCAGGCTGTGATGGCCGAGCCGGCCAACAACGAGCAGGGATGGGCTGTTCGCACAGCCGGGCGTGATCGATGGAAGCCGGTGGACTTCGACGGAGTGATGCTAATGGCTCGACCTCGCCGGTAAACCTGCAGGTCACCAAGT # Right flank : CCCCTGTCAACGACGGCTGAAAAGTGACCCCCTCGCGGCGCCTGAAAGTTGACCCCCTCCCTTCGCGTGTGACCTGCTAACGAGCGGTCCCGGCCGATGGCGGAACCCGACCCAGATCCCGGTCCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACCTGCGGGGGTAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11405-14601 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVW01000049.1 Nocardiopsis sp. FR6 contig049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11405 29 100.0 32 ............................. GGTCAGGGCACGCCGAATACACGATCTCGGCA 11466 29 96.6 32 ............................A CGCGACCTTCGCCCCCGCGGATCCTCCGCCCT 11527 29 100.0 32 ............................. GTCGAGAAGCTCACCAGCGACACCGTGCTCAA 11588 29 100.0 32 ............................. ACCAAGCAGTTCCCGATCATCGCGATGGAGCT 11649 29 100.0 32 ............................. ATGCCCGCGCTGATCGGGTGCACCTGGATCGT 11710 29 100.0 32 ............................. GCCAACGACCGCCTGGAGCAGCTCCGGGACCG 11771 29 96.6 32 ............................C ACGTGCTGGCCACCCCCGGCGCGCAGGACCTG 11832 29 100.0 33 ............................. GGCAGGCCCACGATGCCCAGCTCACGCATCCCG 11894 29 100.0 28 ............................. CCGTGCGGAGCTGGGCTTTGGTGCGCAG 11951 29 96.6 32 ............................C CGGCAGGCGCTGCCCGGGGTCGCGGGGAGGTG 12012 29 96.6 32 ............................A GTACCGAACTTCGGGGCGGTTTGCTTCCGAGT 12073 29 100.0 32 ............................. CACGTCGTTGACCGCATCGTCACTGAGTGGAC 12134 29 100.0 32 ............................. GGGGTGGTCAAGGGCACCGCCGCCCGCGGCGC 12195 29 100.0 32 ............................. GACCAGTTCGGCATCCTCGGGTACGCCCGGGC 12256 29 100.0 32 ............................. GGCCGTCCAAGGACGTACCTGGCTCCGGCTAA 12317 29 96.6 32 ............................C CTGTGGATCGAAGTGCGCCCCGAGGGTCTCGA 12378 29 100.0 32 ............................. GGCACCTGGCGTGTCTCCCGGTACCGCGCCTC 12439 29 100.0 32 ............................. GCGCTCTTGGGCGACGCGACCGAGGCCCGTAT 12500 29 96.6 32 ............................C CATCTGGTGGCGCTGGCCAAGGAGCTGGGCAC 12561 29 96.6 32 ............................C GTCGAGGTCATCCCCGATGAACTCGTGGGTAG 12622 29 100.0 32 ............................. GGATGGGCAGCCGCCGGGCGGGTCTTCAGTAC 12683 29 100.0 32 ............................. CCGCACGTGCTCTTTCCAGGGGGTCGGGCATG 12744 29 96.6 32 ............................C TGCGGGGATCATCACTTTATGCATCCTTGATG 12805 29 96.6 32 ............................T CGCCGATGCGCTCCTGGCGGACGGTGTCGCCT 12866 29 96.6 32 ............................C CAGGTCGCGACCGACCTGCTCGCGATCCTGCC 12927 29 96.6 32 ............................C TCGCTGGGGTCCGAGGCGATGCGGACCATGGC 12988 29 100.0 32 ............................. GGCAGCACTGCTCTTTGGACAAGGGTCTCGTC 13049 29 96.6 32 .............A............... AACAGGCGGGGGCGGCCGTCGCCGGTGACGCG 13110 29 100.0 32 ............................. CTGTACTTGACGGTGCGGGACTTCTTGGCCTT 13171 29 96.6 32 .......................A..... TTGGCGGCCTGGTCCAGGACCAGAGCGGCGGC 13232 29 93.1 32 .............A..............C CATGCCCGGTGCGCCTTGCCGTGCGCCACCGC 13293 29 96.6 32 ............................C CCTTCCACGGGCTCGACACGGGCCTGTGGCTG 13354 29 96.6 32 ............................T GCCCTTGACCTTAGAGCTTGGGACGCTCAGAG 13415 29 96.6 33 ............................C GCGGTCGGTTTGACATTTGTGGCACGTTGTGCT 13477 29 96.6 32 ............................C TCCAGGCTCGACATGAGCCGTGCCCGCAGCGT 13538 29 96.6 32 ............................T CACGGTGAGATCAGAATCTCCTGGAATATCCC 13599 29 96.6 32 ............................C GCATCGACGTAGCCGTCTGCGTCCGGGGCGGG 13660 29 96.6 32 ............T................ AAGGTCTGGGCGGCCGCCGGCGGCGGCAGCGT 13721 29 93.1 32 ............T...............C CGACCCTGGACCACCTGACCGAGGAGCAGATC 13782 29 93.1 32 ............T...............C CCCATGGCCAAGGTCGAGAAGCCCGAGGTCCC 13843 29 100.0 32 ............................. ACGCGGGCGTCCGTGGTCGCCTTCCAGCGCAA 13904 29 96.6 32 ............................T GTTGATCGGGTTGTTCTCCAGCTCCACGGACA 13965 29 96.6 32 .......................A..... CTGGATCGCGCGGGCCTAGGCGAGTACCTGAG 14026 29 93.1 31 ..................A....A..... CGGCAGCACGCCAGGGGTACGTCCCCACTGG 14086 29 96.6 32 ............................C CGGCTTTCGGGTGCCGAACTTGCGGTACCCCC 14147 29 93.1 32 ..........T.................T ACCCCAGGTTCGACGCCATCAAGGTAGGCGAC 14208 29 93.1 32 .............T.........A..... AGGGCCTGGGAGGAGCGGCACGGCACTCGTAC 14269 29 93.1 33 .......................A....C CCGGCGGTGACCAGGTCGAACGCCTCGTCAGCG 14331 29 93.1 32 .......................A....C GGGTTGGCCTTCGTGCCAGGGTGGTTGACCCG 14392 29 96.6 32 .......................A..... CTCCAGGGCCAGTACGAGGAACTCCTCGGGAA 14453 29 86.2 32 .............A.........A.C..C CGAACCGATTCTGCACCGTGCGGGTGGTCTGC 14514 28 75.9 31 ..-..................AA.AC.AT GTCCCGTGGTGCGAAGATCGGCGTAGGATCG 14573 29 93.1 0 .....................A.A..... | ========== ====== ====== ====== ============================= ================================= ================== 53 29 96.6 32 CTCGTCCCCGCGCCTGCGGGGGTGGTCCG # Left flank : GAAACGCGGGTGTGGCCTTGCCGCAGTCATGCACGGCGCACAGCCACATGAAGAACCTTTTGCCCTGGCCACCGGAGACACGGTTGAGCAGGGACCGCGTCTTAGGGGCCAGGTAGTGCTCCCAGAGCTGTTCGGCCACGGCGGCGCTGTCGAGCAGGTGGCTGATCAGCAGGTTGATTCTGCCGCCGCCGATTTTGCGCGACTTGCCCCAAAGAGCTGCCAACCAGGACTGGACTTCCGGGCTGAGGCCAAGCTCGCAGAAGACAGTCTCCACCGACGGTTCTGTCTGTACTCGAGGAACGCACATCAGACTGTTGTTCTCCTTGACAGGGGCAGGAACGGGGGGTCCTGATGGCGGGGACTGCACTGTGGCACATGGCCACGACAATCTGGCGTGTCATGTGAAGCGGAGTCCGGGCTGTTACTCTGCCCAAGCTCAGAGGGCTTCGCAACCGAATGAAAACGGTGACTTCAGGCGACAAAATCGCAGGTCAAAGAGT # Right flank : GCTCAATCGGCGAGAAAAGGTGCGGGTAAGCATGCCAAGGAGTGGGGTCGTGGGATGGAAGCCTTCCGTGCTCAAGGAAGCACGTGAAAGCAAAGGGTGGACCCCTTCCGAGTTAGCCAGGCGCACCGAGTTGAGCCGTACCGTGGTCGGCCGCTATGAGAGAGCAAACGGAAGCGCACCGACTCCGGAAGCTCTGCAGAAGCTAGCCGCAGTGCTGGGGGTCCCGCCTCGTGAGTTCATCGACTTCCGAGTAGCGGGCCTGGCTGGATACCGGGCCGTGTTGGGTCTGACCCAGGACCAGTTGGTGGAGAAGGTCGGTGACCCGGACCTGAACGTGCAGACCTACCGTGCGTTGGAGGCCGGGCGCACGCGCAAGCTCCGCACAGCCCAAGCACGGTCGTTGGCAGCGTTCTTCAAGATCTCTGAGGATGAGGTGCGCACCGCGCACGAGCAGGCGGTGACGCGTCGACAAGCGGATGAACGAGGCTAGGGGCGGGGGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCCTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //