Array 1 12123-10019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEH01000007.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain BCW_2238 NODE_7_length_236803_cov_5.42818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12122 29 100.0 32 ............................. GCTGGTGGGTCACTATCGGCAAAATTGAACAC 12061 29 100.0 32 ............................. GACGAATGATAGTGACATTTATTTTGACGGTC 12000 29 100.0 32 ............................. GCACGCGTGCAGGATGCTCCAGACGGCCCCGA 11939 29 100.0 32 ............................. CGTCAGCGGTTGACATGGCTAGCAGCTTACGC 11878 29 100.0 32 ............................. AAAATGAAAAGCTGGCTAGCGCCGGTGAAATA 11817 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 11756 29 100.0 32 ............................. GGAATTTTAAACAGAAAAAGGTAAATGTATGA 11695 29 100.0 32 ............................. GCGAATGGACAGTGCAATTCGGCGATGAAATT 11634 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 11573 29 100.0 32 ............................. GCATTAATCAGCTCAATACGGACGTAGTTCAG 11512 29 100.0 32 ............................. CGGCATAATTTCAGGAATAAAAAATATGGCTG 11451 29 100.0 32 ............................. GCAGGGATTACCCGCCAGGGCCTGGAGCATGG 11390 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 11329 29 100.0 32 ............................. GTTTTACAACTCAACAGACCATGAAACTGTTC 11268 29 100.0 32 ............................. TCGCCGTGAGGCATCCAGATTTAAGCAACTGC 11207 29 100.0 32 ............................. CGCATTCATTTTCAGTCTTTATCAATCGCGGG 11146 29 100.0 32 ............................. GCTAGCAATGATGCGGATTTGATGGGCGCAGG 11085 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 11024 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 10963 29 100.0 32 ............................. CCGGATCTGGAGATAACGGGGATGTTGACACA 10902 29 100.0 32 ............................. AACTGGATTTGAATTATTTATTTCACTTTCAA 10841 29 100.0 32 ............................. CCATTAACGCCGGAAGAGTCTATAGAAAAATT 10780 29 100.0 32 ............................. GCAGGCCGAATAAACGGCTTAGCGGGAATACC 10719 29 100.0 32 ............................. CCGAACAGCAGGCGATGATTGAAGCGTACGCC 10658 29 100.0 32 ............................. TATGGGTATAATTCTCCATTTGTATGCTAATG 10597 29 100.0 32 ............................. GCGTTTTTATCGTGGACGGCGCCAGCAGCGGT 10536 29 100.0 32 ............................. TGGGGTCGGTGTCGGCTATTGTGGCCGATCCG 10475 29 100.0 32 ............................. ATTCCCCAGCCAGTACCCGTGTCAGTGGGCGC 10414 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 10353 29 100.0 32 ............................. TACGCCGGGATGATTTCAACTACGTTGGACTG 10292 29 100.0 32 ............................. CCCGCGTGACGGTCTGGGGTGATCATTGATAA 10231 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 10170 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 10109 29 100.0 32 ............................. CACACCCTGGCTGGCCGGGTCGCTAAACTGTC 10048 29 100.0 0 ............................. | A [10021] ========== ====== ====== ====== ============================= ================================ ================== 35 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30298-28805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEH01000007.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain BCW_2238 NODE_7_length_236803_cov_5.42818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30297 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 30236 29 100.0 32 ............................. AGGCGCGGGAGGCGGCAGCGGCGGCGCAGTCC 30175 29 100.0 32 ............................. CAGATGATCATCAAAAATATCTGAACGTCTCA 30114 29 100.0 32 ............................. TGCACATTCCTTCGTCCAGATAACCAGCAGCG 30053 29 100.0 32 ............................. ATACAAAACCGTTCAGTGGGGAAAGATCTAGT 29992 29 100.0 32 ............................. CCGCCCGCGTTGCGCAGTATCGGGATTGATAT 29931 29 100.0 32 ............................. GCGTTTAACGTACTTTTCCACGCCGTCCGCTA 29870 29 100.0 32 ............................. GGGCAATTCGCGGCGGGCGATGTCGCGCAGCG 29809 29 100.0 32 ............................. TAAGCAAGGAGTGGAGAAATGATTGATTTTAG 29748 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 29687 29 100.0 32 ............................. CCAACGGACAACCAGTGTGCTGGAGTGAGGCG 29626 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 29565 29 100.0 32 ............................. TACGGGCGCAAAATCACTGAACATCTGCGCAG 29504 29 100.0 32 ............................. CTTCAGCCTGCCATTTTCTCGGACCTGTAGCG 29443 29 100.0 32 ............................. TCGGTCAGCTCGCCTTTTCGGGTCCAGGTATC 29382 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGCAGT 29321 29 100.0 33 ............................. GCGGCGGCATTGTTCCCGCAGATGGATACCGAC 29259 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTACGCCATCTGC 29198 29 100.0 32 ............................. TGGACGCCACCACGCTGTCAGAATACCAGTCA 29137 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 29076 29 96.6 32 .........A................... GGTTCGGGCTGGTTTACGGTGAGCTCAATTTC 29015 29 100.0 32 ............................. CCAGCTCATCGATAAAGCGACCAACCCGCCGT 28954 29 100.0 32 ............................. TCCTCGCTTCGCTGCGGGGCCTCCGGCGCGTT 28893 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 28832 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //