Array 1 76822-76990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000002.1 Tolypothrix bouteillei VB521301 NODE_2_length_454739_cov_10.032214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 76822 26 100.0 46 .......................... TAGTCATCATTAATCGCAAACCAACCACGGTCAAACTTTCAAATAC 76894 26 100.0 45 .......................... ACCAAGCGTATTTATTTTTCAATCACTTTATCGACTTTCAAACAA 76965 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================== ================== 3 26 100.0 46 ATGAAACCCGCTTGCGGGATTGAAAC # Left flank : GATACACTTCCATTGTCAGCAATCCCAGTTGATCCAGTAAGCTTGTGGCTAGCCAAATCTCTTCACCCAACTCAAGAGGGTCTTTCAATTGCTGACGCATTCGGTTGAAGAGGGGTTGCTTGAACGAAAAGACGAATGTAGCTGTTTCCGACGGTGTAAAGCCTTTTTGCGATCGCGATCGAGAAATGCTGGTCAGTATCTCCCGCACATCCTGCCATTCCTCTGCTTGAATATTAGTCAACTTTCCCTGCTGAACGGCAATCCGAAACAAGCTCAGGAATTCTCGGCACTCCTCCTTTAGCTCAGCTTCTTTAATCAAGCCTTTGCGAATGTTGACAGTAGCTAACTCCTGAGTCCACTCCGACAGCAGGTCTGCCTCGAAGATTTCCAGGATTTCTGGTATTTTACTTTCGCTCATCGTTAGTATAAAGGCAACGGCTTTCATTAGTCCAAAATCAGTGTATGCTGATTTTAGACCATTGGTCACAACTTTCAAATCA # Right flank : CTCCGACAGATACATCTGCAAGGGCTCTCGAATTTTTGTACGTTGGACAAACCCAACAAATACCTGTAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGTGGGCTTTGTTTGTATAGACGCGATTACGAACATCGCAAAGGTATTTTTTCCAACTTGGGATGCTCCCACCTGAATTTACCTGAATTTACCTGAATTCTCAATGTCCTGAATTTAACTCAACTATTTTCTTCAAGCATCCAACATACTATAAATAGCAAATAATTATACCGATGAAGATAAAACCAATCGAAAAAACTATCAATTTAAATATTATATTGAAAGACTCAAGCCGTCTAATCATTGGTCTAAAAGTCTCTTAATCGCGCTATGGAAAATGGAGAACGGTAAATTGGTTTGTCAATGGATGGCTGAGTGAAGTATTCATAAATTGAAATATTTAATTTTTTCTATAGCAATTCTGCCTTATAGATAAGACTAAATTTGTACCGTTATTTCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 2 188323-190594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000002.1 Tolypothrix bouteillei VB521301 NODE_2_length_454739_cov_10.032214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 188323 37 100.0 35 ..................................... AATAGCGCTAAAGCAGGCGCACATCTAACAGGCAA 188395 37 100.0 34 ..................................... AATTGCTTCAATCAAGTAAATCCATCCCGGTTCA 188466 37 100.0 39 ..................................... AATTGTAGTGCTCGACCTAGCCGAACCCGGATACGGTAA 188542 37 100.0 39 ..................................... GATTTACTTGGTGGGGAGTAATGATGAAGTTCTTACCGG 188618 37 100.0 35 ..................................... GAGCGGGTTGCTAAGGCTGAGGAAGCACGATTCAA 188690 37 100.0 34 ..................................... GGACTGTGCATTATTTAAAACCCCCATTGCTGGG 188761 37 100.0 37 ..................................... GTATTGAGAGCCAGCTTTATAGGGGTTTATAGCTTAT 188835 37 100.0 33 ..................................... TCAAATTATCTATAGCTTTCATAACTGCGATCG 188905 37 100.0 37 ..................................... ATTTTAATCAATCACGGTAAAGAACCTTTTGAAGTGA 188979 37 100.0 37 ..................................... GTATTGGACCCCAAGAACCTTCATCACCATATTTTGC 189053 37 100.0 34 ..................................... GTTTCACTTATGCCTGGAAACATCTCATCTATTC 189124 37 100.0 39 ..................................... CACCTCGGCATAGCCTTCGTAAGTGAAAAACCGACAGCC 189200 37 100.0 37 ..................................... TGCCTTGGGTGGTGCCTTTGGAATTTCAGAGTAGGGC 189274 37 100.0 37 ..................................... GTAGTTTTTGAACTTCACAGTTGACCAATGGTTGGTC 189348 37 100.0 34 ..................................... GAAAAGCTCAGATCGAAGGTAGGGGGCTATATTC 189419 37 100.0 32 ..................................... GGTTGGCTGTGACGTGCCAACCTTTTTTTAAT 189488 37 100.0 34 ..................................... TTTACCACAGCAACCACAACCACAGCCCGAAGAG 189559 37 100.0 35 ..................................... AAAAGTGGCGCAACATATGAAGAGAAAATGGCTTT 189631 37 100.0 35 ..................................... TCCACACGGCTTGCGGTAATTCAATGTGCAAGTGC 189703 37 100.0 33 ..................................... AATTGATCAAGGTGCGCTTGATAACGGATTTTC 189773 37 100.0 33 ..................................... TTAGTTATGCAAAACCTTCACGCTATTGCTTCA 189843 37 100.0 33 ..................................... GCCTAATGCCCAATACCAGTTATCAGAGCAAGT 189913 37 100.0 32 ..................................... AATATTAATCATGGGCACAACACCCGTATTAA 189982 37 100.0 36 ..................................... AGCTTTACAAGGTCACTTTTATCTAGTCTGTGAGAA 190055 37 100.0 34 ..................................... ATATCGTAGCCGTAATGTTGGTTGATGCCGAACC 190126 37 100.0 34 ..................................... GTTCTTCTTCCTCAGGGTAATCTAAAAGGCATGG 190197 37 100.0 35 ..................................... AGATAAATCACTTGATAGAAACACTAAGATGAAAT 190269 37 100.0 37 ..................................... AAAGTGGAGAAAGCCCTGGAACATTACCCAATGTCGC 190343 37 100.0 38 ..................................... AAGATTGATGCCAATATTCAAATTGTTTTTGCATTGAT 190418 37 97.3 33 ........................T............ AATTTTCAAAAACAAAACTACCAGATAAATAAT 190488 37 81.1 34 ...A..............TTT...T.A.T........ ATCGAAGTAGCGACCAACGCCCCATGCCTCTGAG 190559 36 78.4 0 ..T...........A..AGAT...T.-.......... | ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 98.7 35 GTGGCAATTTATACGAATCCCTATCAGGGATTGAAAC # Left flank : TTCCCGAGTACTGGATTGCGGACTACGCTGCTTTGGGTGGCAAACTTTTCATTGGCAATCCAAAGCAACCCACTCTCTCCATTTACGAATTGATAGAAGGCGAATATCAGCGAGTGACCCAGTTTCGTGGAGACGATCGCATTATCTCTCCAACTTTTCCCGAATTAAATCTAACTGTGCGGCAAGTTTTTCAGGCAAGGACTTAACCCTTGCACTGCACTACGTTTTATAGTTTGGTAAAATACCATTATTGTAGTACTTATGTTCCAAAAAACGCGGATGGGTAGGTGTTTAAAAACGCTTAACTCAAAAAAGACCTTCTATGCCTGAGTACATCAGGGTTACAGCCGAATTTTTCTTCCCACCCATCCGCGCTCCCTACTAGGTATAGGTTTCAGCCATTTTCTCTTGACACTACCAGTCTCAATCGTGTTACGATAAACCCATTCGCGCCAGAGAACCTTGAAAACTAAATAGAGAAACCCTTTCAAAACCCGGCA # Right flank : CATTGCGATCGCAATTTCCTTGGGTAGGTAGTAAGCCATGCGATAATTAACAGATCCAAGAATCTGGGCACTGAGCAACAATAGCAGAGACTCCTATACCTAACGATCCATGCGATAATTAACAGATTGATTTCCCAATATTCAGTCAACATGATTATTGACCCAACAAACGTACCAAAGGAAACGGGTTCGCGCTACCCACAACAGTTTCAAGAGGTTGTCGCCGGACGGATACGACAGCGATTGGGTAATTTTGCTGGCTTGAAAAATTTTGGTGTGAATTTAGTGACTCTAGAACCAGGAAGCACTTCTGCACTACGGCATTGGCATTCTCACCAAGATGAATTTATTTACGTATTAGATGGCGAAATCATTTTGGTGACAGATGCAGGCGAACAAAGGCTAACTCCAGGAATGGCTGCCGGGTTTCCCGCTGGTGACGGCAACGGACATCATTTGCTCAATCGTTCCAGTAAAGTAGCGATGTATTTAGAGGTGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAATTTATACGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 282092-282993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000002.1 Tolypothrix bouteillei VB521301 NODE_2_length_454739_cov_10.032214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 282092 37 100.0 34 ..................................... CAAGAGTACGGCTAGCGCTGGCGGCGGTATGCAT 282163 37 100.0 34 ..................................... GGATTGCTCGACAAGGCGAACTTCCCTGGCGGTG 282234 37 100.0 34 ..................................... GGGTTAATGATACCGAGGGTAAAGTTACTCGTTG 282305 37 100.0 37 ..................................... AAAAGCTGCAATCTTTGGGCAGTTTTATTAAGCTCAG 282379 37 100.0 38 ..................................... TTGATTTCCTTTTAGGCTTCTTAATTTTTAAATCTAAA 282454 37 100.0 34 ..................................... CTATCTCGGGTTGAGCGATCTGATGGCAAGGTAA 282525 37 100.0 31 ..................................... CCACGTGGAGCGATGGGGTGAGAAGGTGCAA 282593 37 100.0 37 ..................................... CAATGATACCAACTCCAAAAGGACCGAGTTTATCCAA 282667 37 100.0 35 ..................................... AAAATGTTGGTATGTGTTGTGGAAGTAAATATGAA 282739 37 100.0 36 ..................................... ATTTCCTGAGTAAAGTAAAAGTCTAAATTTAAAAGC 282812 37 100.0 34 ..................................... TTATTTTTACCAGGAAGACCGTAAACAAGGGAAA 282883 37 100.0 37 ..................................... CTTTGAGTGAGTTTAGTGCGTTTTGGAGGGCACTATA 282957 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 GTGGTAATTTATACGAATCCCTATCAGGGATTGAAAC # Left flank : CACTTCAAGCACTTCAAGTCATAGCAAAGATTCAACCCAACGTGTTAGTTAGTGATATTGGGATGCCTGATATGGACGGATATATGCTAATGCGGCACATTCGAGCAATGCCAAGCGAGCAAATTAGCCAGATAAAAGCGATCGCTCTGACTGCATACGCAGGAGAGATCGATCGGCAACAAGCACTCACTGTGGGATTTCAATACCATATTGCCAAGCCAGTCGATCCCGAGCAATTAGTTGGCGCGATCGTCAATCTTTTGAAATCTGACAGCGCGGATGGGTAGGTGTTGAAAAATGGGGACCTCAAAAAAGTCCTTCTACCCCTGACTGCGTAAGGCTTTCATCTCAATTTCCCATCAAAACCATCCGCGCTGCTTACAGGGTAAGAGTTTCAAGCAATTCCTCTTGTCATGACTGGTGCCAAACGTGTTATGCTTAAGTCATCCGCGCAGCAGTTCCTTGAAAACTTAATAAGGCAAGCCTTTTAAAAGCCAGCA # Right flank : CTTCAAAAAGCTGAGGCTGAAGCGAAGTTACTGGGTGGAAGGTGGTAATTTATACGAGAATTATTAGGGATATCTCAAAGTGTGCGATGGCTTTAAATCTAAGGGGCTTTGCTGCGAACATCTTACAAACGAAGTGATACTAAATCCGCGTTTTGCACCCCCTTGATAATCTAGTCCGCGTAGGCGGTGAGTCCAGGGAAAGCAGGCGGGTTTCCCGCGCCCTGGGAACTGGTGAGTCTAGCGCTGCAGGCGGGTTTCCCACGCCCTGGCGACTGGCGAACCCGGAGGGCGAACCCGAAGGGACTTTGTTTGTATAGCCTCGATTTCCAATCGTTAGGTTGGAGAAACGGATTTGGTATGAGTTCATTGACCAAAAAGCGAGACGCAAGCTCACGACATAAAAAACGACTGGGTCTAGTTCCTGCTTTATGCAACACCTAGCTAACATGCAAAGGTTAACCAGCTAATGCACAAACACAGTTACCAGACCCAGTATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTAATTTATACGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 27961-27474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27960 37 100.0 36 ..................................... TTCAGGAGAAACATTAGGGAAAGCCAAAAAATTTGC 27887 37 100.0 35 ..................................... TCAAACCCACCAGCGATCGCGCCAGCTACGGCAAA 27815 37 100.0 40 ..................................... TTTTTTATTAACTTGGTTTTAGCCAAACACGATGGCTAAA 27738 37 100.0 40 ..................................... AATTATGACATTTTTAGTTGCTGACAAGCAAGCGATCGCA 27661 37 100.0 41 ..................................... GCAGTCCTTTTATGCCATCTATTAGCTATCGCAAAAGGGAA 27583 37 100.0 36 ..................................... CAAAGGCGACTCCGAAGAAAACTGCAACCAGTTTGG 27510 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 38 GTGGCAATTTATACGAATCCCTATTAGGGATTGAAAC # Left flank : ATCTGAAAGACTTGAGTGCGATACGGATGGCTCAATAACCCAACTTATTGATTCTTGCTTTAACAATTCGTAAATGACTCAAGACTTCTAGAAGTTCGTAGTTAGGGCAGCCTTCCATTTCATCCACAATCATTTGTTTGACGTTCATAGATTCAGCCTCTTCTGCCCGTTCGAGAGTCTTTTCCCGAACCAATTGCTCGAATTGCTCCTCGGATGTAATTTCCACTCTTGGAGATTCTCTAACTTTGTCCACATATACATGGAATGCTTCGTCATCATCTCGGTTTGTCAGGACGTATGCTCTTAGCTGAGCTTTGGTCATTGATTGGAAATCTAGATTTGTCATTAATTTGGGGCGCGATCGTTGAGCAAAAGCGATAAGCCGACTGACTGCGGGAGTCCCGCCGGATCGCAATGCCTGGAATGGCTACGCTACTACGGCGTGTGCCGAATTTGAATCGGGAACGGAGTCCCGCCGGAAGACACGTGTTTGCATAGGG # Right flank : TGACTTCATTGGACTCGCTAGTGGGCATTCTAAAAGAGTTACCCCTACGTCAGTCTCCTATATAGAAGTTATGGAATGGACAAATTGGCCAAATGTCAGATTTGAGGAACGGCATCTTTTACCTTCTTATTCTGGAATCTACGCGATCGCGGATGCCAATCAGTATGTCTGGTATGTAGGTCAAGCTGCCAATCTCAAAAACAGATGGGCTGGTAGAACCCATCACAGGTATCCCCAGTTGATTCGGTCAAACCGCAAGTTGTGCCATAAGATTTATTGGAAACAAGTTCCTGTTAACTGTTTGGACGAACAAGAACGGTATTACGTGAACTTATTTCAGCCCGAACTGAACGGTTGTAAAGTGAAAAAGTATCTACCGAAACAGCCCCAAGTCGAACGCGAGATTAAGCGATTATTGAAAGTTCTCAACAAACCAACATCTCTTTTCCCGATAGTTCGTTCCATCGTGGCTGGTAAGTATGAAGATAATGAGGGAAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAATTTATACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 50113-48528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 50112 37 100.0 41 ..................................... GATCGCCTCGGTAAAAGCCAGTAAAAACGCCACTTCTGAGG 50034 37 100.0 36 ..................................... ATCCCCGACTGTGCAAAGGCAATTTTCGGATTTAAG 49961 37 100.0 36 ..................................... AGTTCTGGGGCATGAATTAGCTCTCCTTCAAGGAGA 49888 37 100.0 35 ..................................... TTTTATCCCGTAAATGACCCTTGTACCCCGATACG 49816 37 100.0 36 ..................................... ATTAAGGCTTATAGGTGCTCGGGACGCATTACAACC 49743 37 100.0 36 ..................................... CTAGCTCCAGTGGGTAAAGGTAAGGATGCAGCTGAC 49670 37 100.0 37 ..................................... TTTGCTTCGGTGGGAAAGACGAATTGCCTTGCCTGGA 49596 37 100.0 37 ..................................... GCTTCTTCGGAGGGGCGACTCGCAGAGTCCCGCTTTT 49522 37 100.0 39 ..................................... TAAAATATGCCCAGGAGATTGACTCCAGCCGAATTAGAG 49446 37 100.0 35 ..................................... ATTACGAGCAAGTACTGAAGCGCGATCGCACTTTT 49374 37 100.0 34 ..................................... CAGGAACACGGCTTATCTTCATCTGGCGCGATCG 49303 37 100.0 36 ..................................... ACCTCTAAATCTAGACTAATCCTATCTATTTGTCAT 49230 37 100.0 37 ..................................... AATAAATTACAAACGGAAATAAAAATATGTCTGAATT 49156 37 100.0 39 ..................................... TATCTTTGCTTACCCATCTGGCAATTTGCGCGTGACTTG 49080 37 100.0 37 ..................................... TCTCTATCTCTCCAAAGAGTAAAGAAAGGTTCTGAAT 49006 37 100.0 35 ..................................... CGCTCACTCGCACGCATAGCTGACTATATTACCAC 48934 37 97.3 37 ...........................A......... GAAGAAATAGTTATGTCAGCATATTTATAACCGTCAA 48860 37 100.0 37 ..................................... CCGAAATACTTCTCGGCTAAATTATCCAGAATGCTTG 48786 37 100.0 38 ..................................... TTGTCTCGCTCCTAAAGGACTGTAACCAAGCATTGAAT 48711 37 100.0 37 ..................................... CGATTGCTCAAAGAACAGTATTTAAGGCTGAAGCGCC 48637 37 100.0 36 ..................................... AAAATATTATCACAAGAAATATCTTAGGTTCCTAAA 48564 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 99.9 37 CTTGAAACGTAGCGATTCCCGGCAACGGGATTGAAAC # Left flank : ACGTGCTCAACAAGAGCAACTAAGAGCCGAACAAGAACGACAACGTGCTCAACAAGAGCAACTAAGAGCTGAACAAGAACGACAACGGGCTCAACAATTGGCGCAGTATTTGCGATCGCTCGGTTTTGACCCGGATAATTTACCTAGTAAGTGATGTGATGGTGGCAAGTTCGGTTGGCTGAATACCGTATTGAGGATTGAATAGAACTAGGGGGGCGATCGCTACAATTAACATGAAGATATCTAATCGATCGCTGGACGCCCGGATGCAGTCCGTCTATAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGAAGTCTAAAACCTAGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTGTAGCATTTTGCGATTCTCCATTATTGACATTTTATGTCAAGAAGCGAGGCTGAAATGAGGTCATTTTTTCGATCTGCCAAAACTTCTAGTAGAATCCTTGCTCTATAAGGGTTTCAGTTGGCGGA # Right flank : AGAAATGCTGGAAACTCTCACGTCCCTGGTTGGCACAACAAAAAGCAACATCGCGCATACTACCCACATTCCGCACTTCATTTTGTAGTACAAATACAAGTAAAATAAGTAACAAAAACAGCTTGCGTATAAATATTTAGTTAATTCAGTAATAAATATAAAAATAGTATAAAAAGTGCCAAGAAATGGAAATTCATAAGGTATTGACAATAAATTCAAGAGCAAAAATGAGAAAATGAGCCTGAATTAAATAAAAATACCCAAAGATATGAATTACCAAAAAGAAGAGTTGGAGAGTAAAAACTTAGATCACTTAGGAATAATAGCAGGAATAATAGATGAGATAGGAATAGTAGAAAAATTCAATGAGATATTCTTAATAGATAGTAGAGAGAAAGTTAATACAGGAGAAGTAGTCAAAGCAATCATTCTTAACGCGCTAGGTTTTGTGTCGAGGCCATTATATTTATTTTCTCAATTTTTTGAAGATAAAGCAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACGTAGCGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 788806-788620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 788805 37 100.0 36 ..................................... GCGTTGATTTGCTGCATTGTCAGTATCTCAACTGGT 788732 37 100.0 39 ..................................... ATAAGGAAGATGTGACGTGAAACCATACTCAGGGCTAAA 788656 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 99.1 38 GTTGCAACTTATACGACTCCCTCCTAGGGATTGAAAC # Left flank : CAGTTTGTTGTGTTAGTTGGGATTGGTTGGCTCACAAGTAAAGATGATTTGCTGACTCAGGTGCAACTGGCAGAATTCTGTAAAATTGATGTGATGCAAATTTCTCAAGTGGCGCGAAGATTGGAAGTTAAAGGGTTGGTAACACGCTCTCCTCATCCGACAGATACACGAGCAAAGATGCTAATGCTAACAAATTCTGGCCAAACAATCCTCGAACAAGCACTGCCACTAATTGAGCATTTGGATGCAGAGTTTTTTAGTTGTTGCAATCATGCTGTCTTACTAGCTGAACTCAAAAATCTGCACCTTAACTGTGTCTAATAATTTCTGACAAAGTTGTCTGCTGTTATAAGTTCGCTGTTCTTTCGCCAAGCTCTGTTCGACTACCGATTGATAGGCACTTCCCCATGCGCGAAATTGCACTGTGCAATGTCTTTTTTTGCAGCCATTACTATGGGAGTGAGTGCTTTGGTTGTCCTTTGGACGCGCCCAATGCTTGA # Right flank : AACTGCCAAACACTGCTTGTTTGCGGACAATTGACATCTGACCAAGTATTTAGAATTTAAAGTTGACAAATCCGATATATCGCAATATATTAGATATAATGATAGCGATATATCGTGATACATTAACAAAACCAAGAAATTATATATGTTCAGACAATTTCATCCACGTTTTCCCGTACCAGTCCATGCAGGAGTTGAATTTGGCAATGAATTTTTCATGAGTGCGCGACACGGACACAGAGGTTCGTCTAGTAGTGATTGGGGAAATGAGCCTCGCACCCGTCGCGGTGACATCAAATTTATGCTGCTTGGGCTTCTGTCTGAGCGTGCCCAGCATGGTTATGAATTGATTAAAGAGCTAGAAACCCGTCGGGGAGGCTTTCGCCGTCTCAGTCCTGGCTCTGTCTATCCAACGCTTCAGATGTTGGAAGAAGGCGGTTATTTGACTAGCGAGCAAGTCGATGGTAAACGTGTCTACACAATCACCGAGAGTGGTAGAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACGACTCCCTCCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 792161-790383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 792160 37 100.0 35 ..................................... TTGAATTGTGCGATCGCATCGACGTACAAATCCAA 792088 37 100.0 35 ..................................... TTTACATCAAGAGTTTGAACAACTAAGAGTGAAAT 792016 37 100.0 35 ..................................... GTTGATTCAATAATTGACTCATTAGGGCAATTTAA 791944 37 100.0 33 ..................................... GATTTACTTGGTGGGGAGTAATGATGAAGTTCT 791874 37 100.0 34 ..................................... TACCTCCTAGCAAATCATCCCAAAACTTTTGCTC 791803 37 100.0 37 ..................................... CTAATTCAGATTGCAGTTGGTCGATAGCAGCAACCAA 791729 37 100.0 35 ..................................... TGTCCACTTTCACAGCGAACTAATATGAATATACA 791657 37 100.0 36 ..................................... AGAGAGCATCACCCCCGCACATCAGATTGTGATGTG 791584 37 100.0 37 ..................................... AATTAACACAAACAGCACCAAGCACGGGATTTGTTAA 791510 37 100.0 39 ..................................... GAGTTTATTTTCTCAGAGCACAATACGCCCAACACCGAT 791434 37 100.0 34 ..................................... GGCAAGCAAGGGTTTGATTATGAAAAGCATACCG 791363 37 100.0 36 ..................................... TGGGTCTTAATTGCTGAGATGGCTCAAAGAAAGATA 791290 37 100.0 36 ..................................... TGTTTCTCACAATCGAACCTTAGCGACTCTTGGGAA 791217 37 100.0 34 ..................................... TTTAAAAATGACATAGTGACTCCTATTGATTGGG 791146 37 100.0 35 ..................................... TTGGCGATCCGATTAACCAGGAAATCTCTGAGGTA 791074 37 100.0 35 ..................................... GTGTGGTGTGTGTGAGTAAAACCTAAAATATTTAC 791002 37 100.0 35 ..................................... AGATAAGTCTGATATTGAATCGTTAGTTTTAAAAG 790930 37 100.0 41 ..................................... AGCTCGTGAGCGGCTAAATGTCCTTTTTACTAGAAATCAGC 790852 37 100.0 32 ..................................... TCGCAATCTGCTGGGGCAAGTAGTGTGCGATC 790783 37 100.0 34 ..................................... AGTGATGTACCCCGTTCCGCCTGCGATTCTGCCG 790712 37 100.0 34 ..................................... ATACTCTTTGATTACTTGAATCATTTTACTTGAT 790641 37 100.0 39 ..................................... AAAGCAGCAGTAAAGTGAGTATTTGTACTATCATCATAA 790565 37 100.0 37 ..................................... AGGAAAAATATCTCTCCTATAAAGTAAGTAAAGCTAG 790491 37 100.0 35 ..................................... TACCTTTAGTCGTTTCCTTGCGAAATACTATGCTA 790419 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 100.0 36 GTTGCAACTTATACGACTCCCTTCTAGGGATTGAAAC # Left flank : CTCTAGAAAGTGCAAACTGCAACACAAAAAACACATGACCCGAGTTTCACTGGGACGCAACTTGATTGCTGTCACAGCTATTCTCTTCATATTTGTGCCTATCGGTGTAGATGGTCTTTTACTTGCAAAAGCACATATGGCAAATCCAATGTGGTTGCCATATGTGCTTTTGCACTGTGCAATGTCCTTGTTTGCAGCCATTACTATGGGAGTAAGTGCTTTGGCTGTCCTTTGGACTTGCCCAACAACAGATCTGGCTTCGGCTGCTATTGCTGCGCGGATGGGTAGGTGTAGAAAAAGTACTTCTTGAAAAAGTGCTTCAAACCTTTGATGTGTAAGGAGTTAAGTCCCTTGAAATATAAAAACCATCCGCGCACCTTTCCACACAAGCGTTTCAGCTATTTTCTCTTGTCATTCCCATCCGCGATCGTGTTATGATTAGACCAACCGCGCTACCGCACCTTGAAAACTCCATATTGCAAGCATTTCATCTTTTAGCA # Right flank : GGAATTCTACCTGATTCAGTCGCAGCAAGCATTCCAGTAAGAATATTTTTAACACGTAGCGAAGACCAAAAATTGCTGGAATTAAAACGAGGCGATTGCGTACCACAAATCACAATCATATAGAGCAGAACTCCTAAGACTGTCTTCAAGGGGATGGAAAGTCAAAGAATTATCATCCTACTTCAATTAGACTACTGGTAAGGTACGTACCACAATACACAGATGGCAACAGCATGGTTTGAAAGGATTGTGGAATGTGCCCCGTCCTGGTCGAACATTGACGATGAAGATAATGAGAGTGGGAGTAAAAATGATTGGCAATCAAACCAAAGGTAAAAGCTTTCGTGGACTTCTTGAATATCTCGAAAATCAGGCTATAGTAAATATATATATAATAAATGTATTTACTATATAGGCAGCGTTAGTCTTTTAACCCGCCGCCATAGTTGTGCTCAATGAATTTACATCTTGCCGACTCCTACTGTTTAGTTGATTACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACGACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 800100-798240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 800099 37 100.0 35 ..................................... ACTGAAGCATCAATTCCCCATGAAAACTTGGTTAC 800027 37 100.0 33 ..................................... ATTACTACTTATACAAACTATTTTGGAATTTAA 799957 37 100.0 40 ..................................... AAAAAGTAGATCGCTTATAGTATCTCGAATTTTGGCATTC 799880 37 100.0 41 ..................................... GAGTTGAGCAAAGAGGAAAGTTGAGTTGAGCAAAGAGGAAT 799802 37 100.0 39 ..................................... ACTAAAATCAGAAATACCGAATATTTCATCAAAAGCACA 799726 37 100.0 35 ..................................... CTTATATGAAATTAGAAGAATTAAAATCATCTTAC 799654 37 100.0 43 ..................................... GGGATATGAATCAGCACACTCAAGAAAGATACGAACTGAGCGC 799574 37 100.0 38 ..................................... CAACCAGACCAGCCGAGCGTAATGTATCGATTAAAGTA 799499 37 100.0 33 ..................................... TACCAACTCAAGTCAATCGGTGCTGACCTCCCC 799429 37 100.0 35 ..................................... GCAGAGTTGGGCAATTCCCGAGAAGAGGCTGAGAA 799357 37 100.0 32 ..................................... ACAACAACTGGCAGCCAATAGCGCACAGAAAC 799288 37 100.0 32 ..................................... CACACGCTGCTACTATCTTCTGTTGTCCCCTG 799219 37 100.0 38 ..................................... ATATTTAATACTTGCCATAATAAATTGTGTACTGTTGC 799144 37 100.0 39 ..................................... TGCAAATCAAGGTATTACTGTAGATGAATTAGAGGCTCT 799068 37 100.0 36 ..................................... GTAGAGTATCACCGGAATAGTACCGGGATTATCACG 798995 37 100.0 36 ..................................... ATGGTTGGGATGCCGACAATATCAACCAAAAGTATT 798922 37 100.0 35 ..................................... ATGAGAAAATCTAGGCTTCAACTCGGAAGCCTAGA 798850 37 100.0 35 ..................................... GTAATGTAGCGGTAGAAGTATCAAAACTTCCTTTG 798778 37 100.0 34 ..................................... ATAAAGCGTATGCTGTCTACTCATTTAGAGAGAA 798707 37 100.0 33 ..................................... AACTTTTAACAAATCCCTGTATACTTCGCCCAG 798637 37 100.0 33 ..................................... ACGCGCACGTACAGCACGCAGCTTACGCGCTCG 798567 37 100.0 34 ..................................... TTATATAATAAAGTGCAGATTTGTACTACTCCTT 798496 37 100.0 36 ..................................... CTTAGTTTGTCTCCCTTACCAAGGACAGAAACTTGC 798423 37 97.3 35 ...............G..................... TTAAAAACCCGCTCATTTCCGCGCTCAATTAAGTA 798351 37 97.3 38 ...............G..................... CTCCAGCATTATGCAAGAGGCAAGCCAAGAAGCGAAAA 798276 37 94.6 0 ..........................A.......T.. | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.6 36 GTTGCAACTTATACGACTCCCTTTTAGGGATTGAAAC # Left flank : CCTTAGAATAGTGTCACTCAAGTGGCGAACAACTGCACCAAACAGTTCTTCCTTACCTCCGAAGTTTTGATATATGGTGCGTTTGGCAACATGAGCTTCACGAGACAGGATGTCCATATCGATCAAATCATATCCAAGCTCTAAACACACGCGAGTTGCGTCTTCTAACAACTGCTCTACGGCGTGTTTTCAATTTAATAAATAAACCCTGCATTATTACCTAAGAACGAAAACACTAACAACTGCTCTACGGCGTGCTTCGCAAGCATTATTGCGCGGATGGGTAGGTGTAAAACAAGTAGTTCCTATAAAAAGTGCTTCAAACCTTTGATGTGTAAGAATTTAAGCCCCTAGAAAAATAAAAACCATCCGCGCTCCTTATTAAATAAGCTTTTCAGCCATTTTCTCTTGTCATTACCATCCGCGATCGTGCTATGATTAGACCATCCGCGCTACTGCACCTTGAAAATCACATAGAGCAAGCTTTTCAACTCCAAGCA # Right flank : TAAATCTGCCTCTTGTACCCCCTTTATGATTAAGTCCGCGCAGGCGGACTTTGTTTGTATAGCCTCGATTTCCAATCGTTAGGGTAAAAGCAGGGGTGTTTCATTCTTTCTTTACAGAAGAATAATTGAACAAAGTCTTTTCCCTCTAAAACGTATAAAAAATCTTCGGTTTACCGTACTTTTTTATAGTAGTTATTTCTAGTACGGTTATTATGAATTTGATAGTAGTTGAAGCCGAATCACAAAGCTTTTCTCCCAGGAATATTATGAGTATATAAAGCAAAGTCACAAGAACGCAATTTCTACTTATTCATAATACCTATGACACTCATTCGTTACAATCCCTGGCAAGAACTAAACGCTATCCAACGCTTGTTTGAAGATACAAGAGTTCCATTTGAGAAAGATTTTGTGAAAGTTCCGGCTGCTGAACTGACTCAAACAGATGATGCAGTTCATCTCAAATTGGAACTTCCAGGAATGGATGCTAAAGATTTAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACGACTCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 2583539-2586090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2583539 37 100.0 31 ..................................... TTTAAGCGCGATCGCAAGTTCGTTGACTAAG 2583607 37 100.0 38 ..................................... CAACAACAAAATAACTATATAGATAAAAACCACCGCCC 2583682 37 100.0 36 ..................................... TTACGTTGCATCTCTAATAATATTTAAAGTTAGATT 2583755 37 100.0 34 ..................................... TCTTCAACACTTCACCATTGAATCTAGTAATAGC 2583826 37 100.0 36 ..................................... CATCAAAAGTTTCAAGTATTGAAAAAGAAAAGTTTT 2583899 37 100.0 39 ..................................... CTGATAAAGCTATTACCATAGCCAACAAGGCTTCTTCAT 2583975 37 100.0 33 ..................................... TTGCTATGACAATCCTTCTTTACCCAAAAACCC 2584045 37 100.0 40 ..................................... CTGCATTGCTACACGTGCCAACGTGCCAGATTTAGGGAAA 2584122 37 100.0 34 ..................................... AGAAACTCTACCTTATTCATGGTTGCGTTAAGCG 2584193 37 100.0 33 ..................................... AACAAACAAAGCCCGTACTTATATGGCTATGGC 2584263 37 100.0 31 ..................................... AAAATCCATTTACTCCGAGATTGGCTGTACC 2584331 37 100.0 34 ..................................... CTTTGAGTTTTGAGACTGCCCTGTAAAACGAGCG 2584402 37 100.0 33 ..................................... CCATGTGCAAAGCATCGAAAATGTACAGATTGC 2584472 37 100.0 32 ..................................... TTTTTAAGTAGCTTTAGTTATTTAACCTCAAA 2584541 37 100.0 35 ..................................... CGTAAAGGAAAAAGGAATAAACCAAATTCCTTGAC 2584613 37 100.0 34 ..................................... TAAAATCTTTTGGTTTAATGTAGTGAGGAAGTGA 2584684 37 100.0 34 ..................................... GCTAGTTTCCCAGCGTGAGGCAGCGACGGCAGCG 2584755 37 100.0 34 ..................................... TTGAAAGAAATACAAATCAAGATAGCGCGTTGGA 2584826 37 100.0 32 ..................................... TGCAGTATCCCGCAGCGCACCAACAAACAAAC 2584895 37 100.0 34 ..................................... GCGTACCACATACAGGTGTGACCCATCTTTCACG 2584966 37 100.0 37 ..................................... ATAGCAGCTAACTTCATCAGAATGGCGGCTGTAGAGG 2585040 37 100.0 37 ..................................... ACGCCACCAATAACCACAGCACCAACGAAAAAGCAGC 2585114 37 100.0 34 ..................................... ATTAGCTGGGCTTCCGTAAGAGTCAGAAAAGCAC 2585185 37 100.0 36 ..................................... CGGCACGAACAATCCAGCGTGCTTGAATCCGAGGTA 2585258 37 100.0 31 ..................................... GAAAATGAATTACTAAATTGCATTGCAGCGC 2585326 37 100.0 36 ..................................... AAGAACTCGCTGTCACAAGCCGGATCTTTCCACGTG 2585399 37 100.0 31 ..................................... CTGGTGAAATTGAGACCTCACGAGCTCCGCT 2585467 37 100.0 35 ..................................... TTGCGGTTCTTGCTCCTCAGTTTGCGGCTGTCCAG 2585539 37 100.0 36 ..................................... AATCTCAATAACCCACAAGTCCTCAACAAGCTCGTA 2585612 37 100.0 38 ..................................... GCACAACTCCGTTGCCTACACTAGATGGTGGTATCAAA 2585687 37 100.0 37 ..................................... CCGGTTTGTCAAGCAGACTCATTTGGGATTCAACAAG 2585761 37 100.0 39 ..................................... TATACGGGGCAGGTGGTACAGGTAAGACAGAGACTGCCC 2585837 37 100.0 35 ..................................... TCTATTCTATTTAAAATCTCTAAAGATTGAGTAGG 2585909 37 100.0 37 ..................................... GCAAACAACCTACAGGTATTCCAAGATGCGAGGAAAG 2585983 37 100.0 34 ..................................... TGAAGACAAAATGAAAGATTTGCAATCTCAGATT 2586054 37 86.5 0 ..............................C..CGCG | ========== ====== ====== ====== ===================================== ======================================== ================== 36 37 99.6 35 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAACGTTGTCGTGTCTTATGACATTTCCGAAGATAAACGTCGTACCAAAATCCATAGCGTGCTTAAGTCCTACGGTCAGTGGGTGCAATTTAGCATTTTTGAGTGCCAACTCACTGATACCCAGTATGCAAAGTTGCGATCGCGCTTGAATAAACTGATAAAGCCCGATACCGATAGCATCCGCTTCTACTTTCTATGCGCCTGCTGTTTCGGTAAAGTAGAACGTATCGGTGGTGAGCCAGTACGCGACGACACAATTTTTTTCGCTTAATTCGCGGATGGGTAGGTGTTGGAAAAGAACTCAGCAGAAAAATGGCTGAATTCCTTTTAGCATAAAGCTTGAGAGCGATTTTATTACCTCACCCATCCGCGCACCTTACCCAGACTGAATTTCAGCCATTTTCCCTCTACTCAATTTCAATTTATCGTGCTATGATTAACCCATCCGCGATTTTGAACCATGAAAACCAAATACTGATTGACTTTTGGATTCCTGCC # Right flank : GAAACCAATATAAAAAAGCGCAGCAACATTATGGTAGAATAATGTTGGTACAGCGAAACAAAATTTTGTAAAAGCATGACCGTTAGTAGCAATTATCTTTGTTAAGAATTGCTAGTTTTTCTAGGGCTGTCGTAGGCAAAAGTTTCTACGCTTCGCGCTCGGACGCCAGTGTACCTGGGAATGTTATCTAGTCCTAAGACTATGTAGCGAAAGAATCCCCAACTATAATGCAAGTTTAGTTGGTGGTGCGTTCAAAGGAGAACTTAATGAAGCTGGCATTGTTTGGAGCCAACGGTATGGCTGGAAGTCGAATTGCGCGGGAAGCATTGATGCGGGGTCATGAGTTAACTGCAATCGTTCGTGATTTATCTCGCTTCTCGCTATCGTTCGATCGCTCCACCAAGTTTGTTGGCAATGTTATCGTAGGTAACGTGCTCGATCCAGCGAATGTGGCAGAAATTGTAAAGGGACACGATGCGGTAATCAGTACCGTAGGACCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 2587473-2588599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2587473 37 100.0 35 ..................................... TAGAAAAGCAATTTTTTATAGGTACTGGATTGATT 2587545 37 100.0 36 ..................................... TAAATGAGCAACAGTTTAGCGCTTACAGACTATCCG 2587618 37 100.0 33 ..................................... CTGAAGGAGGATCGATCGCTTCGTGAGTATAGG 2587688 37 100.0 36 ..................................... ATCGGATGCCATGCGATCGCTCCTTACAATTGACCG 2587761 37 100.0 39 ..................................... GATTGGGTGAAATACAGAACACCAGTGTGGAGCGATCGC 2587837 37 100.0 34 ..................................... TTGGCTCAGCCACAAGCCAGAATCATCAACACTG 2587908 37 100.0 34 ..................................... ATGCGATCGCTGTTCTTCTTATTCAGATGGTCGT 2587979 37 100.0 32 ..................................... ATCTGAGGAACCGGACGGCTGTAAGGGGGACG 2588048 37 100.0 47 ..................................... CTTAATTTGCCCCGCATTCTGGGGCTGCTGCCTCAGCAACTTCTCAA 2588132 37 100.0 38 ..................................... AAATTTTTGACAGCAGTGCTGTTTTTCCGCATGGCTCC 2588207 37 100.0 31 ..................................... CTCATCCTGGCTCCATTGGGAGTCGCAAAAC 2588275 37 100.0 34 ..................................... CATCATGACTCAAGTTTACGAAAAACCCATTCCC 2588346 37 100.0 36 ..................................... CTCCTCTCCACTTAATCAAGTCACCGACTTTAATAT 2588419 37 97.3 34 ........................T............ TCAAAATGCATTAAAGGTACGGGAAAAACGATTT 2588490 37 97.3 35 ........................T............ TTAGATAAAACAGGCGGAAAAGGAAAGAAAATTGC 2588562 37 91.9 0 .........AA.............T............ | T [2588597] ========== ====== ====== ====== ===================================== =============================================== ================== 16 37 99.2 36 ATTGAAATTCTATTGACTCCCTTACAGGGATTGAAAC # Left flank : GATTGAGCAACCACAATTTGTTCGTTGTCGCATGACTGTTGCTTACTAATCTCTAAGCGGTTGCTCGGCACAGACATATGCTTGGCAAAACGAATGTATTGTGCCAAAGGCAATAATTCACTGACTCAAATTAGATTGCTTCCACTAAAAATGGTAGTGTCGCCCGAAGCTCAAGCTAAACTCAAAGGCAAAAATTCTGCATTCTTACTAATTTGGTAAAGTTAAAGGGAGCGGTGGTGAACTGCCTTACAGCAACACAATTTCCGTGCTTAATTCGCGGATGGGTAGGTGTGGGCAAACCACTTAACTCAAAAATGACTGAAACGTTTATGGTGCAAAGCTTAGAGGCACTCTGTCAACCCGATCCATCCGCGCACCTTACCCAGACTGGATTTCAGCTATTTCACCTCTACTCAATTTCAATTTCTCATGCTATGATTAGCTCATCCGCGATTTTGAACCATGAAAACCGAATACTGATTAACTTTCAAGCTCCTGCC # Right flank : CAAAGAGTTTTGTATTTCTTCATGCATCTATCCACGATATCTGTTATTTAATAAAGGTATATTGCATTTAACCCAATCACATCCATGACTATTGCAATTGCTCTAATTGCGATCGGAGTTTTGACACAAGCGGTGGTTTTGGCAACCTCACGGTCATCGCTGGTTCGTTTCAACCAAACTTGTCAAACTTGCGGTTATCAGATTCCACCGATGGAGCGTTCTCCTGCATTCCACGATTGCCCAGAATGCACCCGTTTGTCTAACCTTAGTGACCCACTGCCCCGCTTGTAGGCTTTACTTTTTTAAGTAGCAGCACCAGCAGCGCACCTGCAAACAGAGTAAAGCCCATGAACAGGAAGCAGTCATTGAAGGACAAGACGTTTGCTTCTTGGCGAACAATGTTAGCGATTTGTGCAATTGCTTGGTTGTGGGCTGTCACCGGATCGGCACCTCGATCGGTAAAAAACTGTGTCAGTTGGTCAATCCGCTCGAGCGTAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTCTATTGACTCCCTTACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 8 3224010-3224770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3224010 37 100.0 37 ..................................... CTCTGAGATAGGGAATTTAATGTATGAATTTTCCCCA 3224084 37 100.0 36 ..................................... GACCACTTGCGAATGCTGGGTGCGGAACAAGCCCCG 3224157 37 100.0 36 ..................................... CGGGTCTCATGCGATCGCGAGTCAATTATCAAGTAA 3224230 37 100.0 37 ..................................... ATCTTCAATACATTTATGAATATCAGCATATTTTCAG 3224304 37 100.0 33 ..................................... GAGGCACGGAACATATAAAGCCCCATCTCCCAA 3224374 37 100.0 37 ..................................... ACTTCCCATTCTAGAGTTTCTATCATATAACGATGAA 3224448 37 100.0 35 ..................................... AACCCATATTGTTGAGTTCGTCCAAGTCTTCCTTG 3224520 37 100.0 36 ..................................... ACTACTATTATCCTCAGGATATGGAACCCTGTCCGG 3224593 37 100.0 35 ..................................... GGAACACCAAAAAACGATGGCGGAAGCGCTGGCGA 3224665 37 100.0 32 ..................................... ATTTTAGCTGTTTTTATTTCGATAAAGTGGAT 3224734 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 36 CTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAAC # Left flank : TCTGTTTTGCCTCGTAATTTACGACTTGCCAGACAATAAAGCAGCAAATAAACGGCGAACAAAGCTCCACAAAATGCTTTCTGGCTATGGGACATGGACGCAGTACAGCGTATTTGAATGTTTTTTGACCGCCACGCAGTTTGCTAAACTGACAGTGCAAGTTGAGAACTTGATTAAACCTGTCGAAGATTCAGTACGGATCTATGTTTTAGATGCGGGCTCGGTACGCAAGACCATTACCTACGGTTCCGAGCAACCTCGACAGCAAGATACAATAATATTATGATGTTAGGGTCATCTTGCAAGTTTTTTGGCAGGGCAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAAATCAATACTTTCAGGGCTTGCGGTACGCGCAAGAGCCTTTTAATCAAAGCCTGAAATGGACTTTTAAAACAGTCCCGCCAAAAATGGTCTTGGAAATGGCTCTACATTTAGCTTCTGTTGGGCTGCC # Right flank : CAAGCTAGCTACTATAGATACAGATAGGCAGAGGTGCTTTCAGTAAATGAAACCTGCTTCGTTATGAAACTTTTATTGTCTATTTAAGTAAGTTGACGGATTAAAGAATGAATACTACTCAATTAATAATGAATGGAGATACACAAACGGTTATATTACCTAAAGAATTTCAATTACAAGGTAATGAAGTTTATATTAAAAAAGTAGGTAATGCTGTGGTACTGATTTCTAAGGAAAATCCTTGGCAAACATTATTTGATAGTCTAGATATTTTCTCTGAAGACTTTATGGAAAATAGAGAACAGCTTTATTTAGAAGACAGAGAAGATTTGGAATGAGATTTTTGTTAGATACAAATACTTGCATCTACATTATTAAACGTAAACCAAAGAAAGTACTAGATAAATTTCAAGCGTTAGATATATCTGACGTGGGAATTTCATCAATTACAATTGCAGAACTTGAATACGGCGTATACAAAAGTCAACGTCAAGAGCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 9 3225987-3227264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3225987 37 100.0 36 ..................................... CTTTCAAGACCTTCTTAACCCAAGATATTTGAAAGG 3226060 37 100.0 38 ..................................... CAGCATCTTGCGATTCAGTGCGTGGGTACACACCTCTA 3226135 37 100.0 36 ..................................... ACGGTGCGGGGAGTGGGAGGAAATCACTCTCCGAAC 3226208 37 100.0 37 ..................................... AATTCAATCGAGATTGACTATGGAAACATCCCCTTTT 3226282 37 100.0 39 ..................................... CTGACAGTTTGAATAGCGATCGCTTTGATATCTTTTAAA 3226358 37 100.0 35 ..................................... GATCCAAGATGACCTCGTTGTGCCGCGTGTCGCAA 3226430 37 100.0 37 ..................................... ATAATGAAATTGAATGCGTCTGTCCCAACTGCGGTCA 3226504 37 100.0 35 ..................................... CGTTCCCTTTCATGTCTTTAATGTATTACATATAA 3226576 37 100.0 36 ..................................... ATTTCAAACGCTGACATTCAGCAAATTAAGACAGAA 3226649 37 100.0 34 ..................................... TGAATTACACGCAGCAACAGATACAAGCGGCAAA 3226720 37 100.0 36 ..................................... TGACAAAATTTTATTAGGAGATATTCAAATGGCGTT 3226793 37 100.0 36 ..................................... TTTCAGCCCAATAATCAACTTTAATCTCATTACTAA 3226866 37 100.0 35 ..................................... AATAAAAGTTTGGTCAGATATTAAATTATTCTCCT 3226938 37 100.0 36 ..................................... TTCAACCACAATTCAAAAGCTTCTTGAGCCACTTTA 3227011 37 94.6 34 .........A...........T............... AGAAATGCCTGTAAAGCTAAAAATTGATTTTGAA 3227082 37 94.6 37 .........A...........T............... AGCCCTTGCGGAAACAGTTTCTTGCCGACTCGCGAGT 3227156 37 94.6 35 .........A...........T............... GAAAAGACAATTGCTTCTACGTCATCGATTTGGTT 3227228 37 78.4 0 .........A.........T..CT......C..G.CT | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.9 36 CTTTCAAATGAATGAAACCCGCTCGCGGGATTGAAAC # Left flank : AGAAAATTGGGTGGATTAGTCCACCAAGTGAGAGAGTGCATACCATTTTGGCAAATTGCCCTCAGAATAAAATTCTTGGGCTATACGTAATGAAGAGGGCGCTACGCAGGCTTTAATTAAGTCCGCGTTGGCAGACTTAGCCTGTTCGGTACGCAAGATCATTACCTACGGTTCCGAACAACCTCGACAGCAAGATACAATAATATTATGATGCTATCCGCACCTACATTTGAATTATTCAAAGCATTAAGGGTATACCTCGACAGCAAGATACAATAATATTATGATGCTAGGGTAATCTTGCAAGTTTTTTGGCAGGGCAAAGCACGGGCAAAAACCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAAATCAATACTTTCAGCGATTGAGGTATGAGCAAGAGCCTTTTGATGAAAGCCTGAAATGGACTTTTCAAACAGTCCTGCCAAAAATGGTCTTGGAAATGGCTTTACACTTAGCTTCGGTTGGGCTGCC # Right flank : TCACCGCCTACGTAGACTAATAAATCACAGCCAGCGAAGGCAGGCTTTGTTTGTGTAGCCCCAGAATTCTATTCTGAGGGGTACTCCCACAGATTAGGTGTCACATCTGTACTTTAAGCAGAGATAAATCAAACTGGAATTTCGATAATCAACTCTGTACCTTTGCCGACAACTGAATTACAACTTAACTTACCACTGTGAATTTCTTCGACAATTTGCCGAGAAATAGCCAAACCCAATCCCGTACCTTTACCAACTTTTTTTGTACTAAATAAATTATCAAATATTTTTTGTTTAACTTCTTCCGTCATTCCTTTACCATTATCAGCAATAGTAATCTTAACTTTTTTATCTTGCATTGAAGTTGTAATTGTAATTCGGTTGGTGTCTGCCTGAATTTCTACAAAACTGCGTCCGTTATTTGATTCATCTAATGCATCGATCGCATTTGCCAGAATATTCATAAACACTTGGTTTAACTGTCCCGGAAAACACTGTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATGAATGAAACCCGCTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 10 3532616-3531140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3532615 36 100.0 38 .................................... TAGATCTGGTCATTGGCAACGTTCCGTTCGGTCAATAC 3532541 36 100.0 34 .................................... TAGCGGAGAGTTGATTGAATCCCCGCCATACTCG 3532471 36 100.0 37 .................................... ACTTTTCGCTGTGCTAAGTGCGCTCGTGATGTGCCAT 3532398 36 100.0 36 .................................... GAAACAATAAATTTGTTTTGTTGTCTGCCATCTGAC 3532326 36 100.0 35 .................................... AATTCACCAAGCCGTTCTTGGACTCCCCCATGTCT 3532255 36 100.0 35 .................................... TTGGCTAAAGTTAATCTTTTTTGTAAAATCTGCTG 3532184 36 100.0 35 .................................... TTGCATCCTGCCATTCAAAAAGCGAGCTACCGTCA 3532113 36 100.0 35 .................................... TCCTTTAGCAAAATAAGTAAAATTGCGCTGAACCA 3532042 36 100.0 35 .................................... CCGCACAAAGATAAGTGCCAGCTATACAGGAGATT 3531971 36 100.0 35 .................................... TCGGTCATCGCTTGCTACAGTTCTTTATGTGGGTT 3531900 36 100.0 36 .................................... TATTTCCAAATACAGCTTTATGGGTTGAATGCGACT 3531828 36 100.0 36 .................................... AACCCACAGCCTAATTTTAAATGGAAAGTATTTCAA 3531756 36 100.0 36 .................................... CCATTAGTGTAAAACAAAACAGTTTCACACAGTTTT 3531684 36 94.4 37 ................T...A............... CAAGAGCTAGAGTAAAATCTCTTGAGAAAGAGGTGGA 3531611 36 91.7 36 ................T...A.C............. GGGTATGATTGGTTATACAATCAAATCCTTAGAGGA 3531539 36 86.1 36 ......T.....C...T...A...A........... ATCAGAATAGGGATAAGCATCTAGTAAGATACCCTA 3531467 36 86.1 36 ......T.....C...C...A.C............. GCAGAATAAGTTTCATTTTGGATTGATTTATGTTTC 3531395 36 86.1 36 ......T.....C...C...A.C............. ACAGAATAAGTTTCATTTTGGATTGATTTATGTTTC 3531323 36 86.1 40 ......T.....C...C...A.C............. AGCACAACATTGCTTTTACCGGACCACGACACCTGAGAGA 3531247 36 88.9 36 .....GT.............A.C............. CCATATTCAGACAGAATTGAGTCGGCACTCGGAATA 3531175 36 88.9 0 ......T.............A.C....A........ | ========== ====== ====== ====== ==================================== ======================================== ================== 21 36 95.6 36 GTGTTTCACCTTTGATAGCCGATAGGCGTTGAGCAC # Left flank : TCTGTCAAGCACTATTTTAAGTCTGTTTATCGCCTAACGGCATCTTAGGTTAGGAGCAAGAAGGGTAATGTTAAGCCCATCCGCCCTGTATTGCTTAGAGGTTCTACACCTTGGTAGCACGAAAGTGCTCAACGCCTGATGGTCACTTAGTGTCTAACGGCATCAAAGTTTTTAAAACCCAAGCTTATAATAACTTAGAAACTCAAAGGTCGATTTAATTTTCTTTGTTGTTGAAAACTGCAAGCATCTCTTTTTGTGAAACCCGATTTGCAATTAAAAGTAGTTGCAAGTCTTATTTGGTAAGCGTTTGAACTGCTAAAAATTGCTGTAAGGTACTTGCACAATGGGTGAAATGCTTATATGAAAAGGATTGTAGCCATTAATCAACTCGTACAAAAATGCCACTTCAGCCGTTTTTTCGGGTTGCTATTGTGTCTTTCTCAGGGGTGCTTGTAAAATGACTAAGAAAAGCACTCGGAGTCGGTATTCCCAAGCTCGCC # Right flank : ACGTAGTGGCTGAAACTATTTTCCTAGTTAGGATTTTCGCACACCCGCTAGGATAAGCGCGATCGCTTCACTTGTATGTTGCTCCAGCATGGCTTTGCTCAAAAGCTTCTTACCTTGGGGAAACTGCTGGATGTTACCTGCACCAATAAAATAGAACAAGCAAGTTCCCATAATATTAATTGCAGACTGAAACGGATCGAGCGGACGAAATATCCCTTCAGCCACGCCCTGTTCCAGAATTGCAATCAAAACAGTATCAATACTCACAGAACTACTGTTTTTATAGTACTTTCCCTGGTTTTGCACTGCTTCGTGAAACATGATTGTCGGGAGTTTTGGGTTACGCGATACACAACCGAGCAATGCTCTCAAAAATCTTTCCAACGCGACTTCCGGTGACAAATCCTCCAACTGTAACTCCTGAATCGTTTGCAAAAGATCGCTATGCGATCGCTCCAAGACTGCTTGATACAAACCTTCTTTATCTTTGAAGTAGTAAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCACCTTTGATAGCCGATAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 11 3542237-3544343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3542237 36 91.7 37 ......G.....C........T.............. TACATTAGAAACCTTGAGAAGAAAGCACCATCCTTGC 3542310 36 91.7 34 ......G.....C........T.............. TAATTGTTCCCGTTTATTAGAGAAGAGTTAGCGG 3542380 36 91.7 38 ......G.....C........T.............. TGACAATGCTTGCAAACTGGAAAAACCGTAATACCAAT 3542454 36 91.7 36 ......G.....C........T.............. TTGTCTGTCTCAATGGGGATATCCCCATTGAGAATT 3542526 36 91.7 36 ......G.....C........T.............. ATTATTGATTTTGATTTGTCATCAATAATTGATTTC 3542598 36 91.7 36 ......G.....C........T.............. AGTAATAGGCGCTTTACCGTCAATTGATAGCTGTAA 3542670 36 100.0 34 .................................... AACTTAACGTAAACCAGCAAGGGGCTTTGCTTAG 3542740 36 100.0 34 .................................... TAGACTTACTCGCACCACGCGGATCGGCTAAGTC 3542810 36 100.0 36 .................................... AAGATATCACAGACGAGGAAGAAAAGATTGGAGTGT 3542882 36 100.0 34 .................................... CACGATAGAAATTAGAACAGCGCTAAGGGGAGAA 3542952 36 100.0 35 .................................... CAGAATATAGTGTTAGGCTAATGCAGCTACAAAAC 3543023 36 100.0 36 .................................... GTGCCTTGCACTTCCGCTTATTGGAGCGCTCCAAGC 3543095 36 100.0 37 .................................... TGGTTGATCCTTTCCATCCCAATCCCAAAGAGCGCTG 3543168 36 100.0 34 .................................... GAATCGATTTAGCAGCGATTCCGGCAATGTCCCC 3543238 36 100.0 34 .................................... AAACTCTCATGGTCTCGCTTCGCTCGGTTGTTTT 3543308 36 100.0 34 .................................... TTCTGGGGGTTTGTACTTCAACCCCTCACACCGC 3543378 36 100.0 36 .................................... GTTTTTACTGCTGACACAGACACTTTAGTACCGTTA 3543450 36 100.0 35 .................................... CTAGTCTTGTTAGTACAAACCTTAATCCACTAATC 3543521 36 100.0 35 .................................... AATTCCAAGCGTGGAACCCAAGCCAAGTTGAAGTC 3543592 36 100.0 35 .................................... GTATTGGGTCAATTAGTCTTCCCACGAATATTAAT 3543663 36 97.2 34 ............C....................... TTTACCAATCGAAGGTAAAACTATGTCAGTAAGT 3543733 36 97.2 36 ............C....................... ACAGTCGGAACACTTAAAATTATCACTTCTACTTGG 3543805 36 97.2 36 ............C....................... ATCCTTGCGACCACGTTACACAATGCTTTAATGCTT 3543877 36 97.2 37 ............C....................... ATATTTGCAACCACGTTACACAATGCATTAATGCTCT 3543950 36 94.4 38 ............C........T.............. ACACAAAACTCTCAAGGTGAAACCACTCGTGCATCGAG 3544024 36 94.4 36 ............C........T.............. GAGGTCCCGCCACCAAGAAATCACCCCCCCCGAACC 3544096 36 94.4 35 ............C........T.............. ATTAATCCTGTGTTTGTTCAACTTGAGAATCTGTT 3544167 36 91.7 35 ..T.........C........T.............. ACTCCAGAGTTGAGGGAACAGATGATGATGTCCCC 3544238 36 91.7 35 A...........C........T.............. CATCCACCTGGCTTAGTTGTGCGCCATACCCTGGC 3544309 35 86.1 0 ......G.....G................CT.-... | ========== ====== ====== ====== ==================================== ====================================== ================== 30 36 96.4 35 GTGATTTAACCTTAGATACCGCAAGGTGTTGAGCAC # Left flank : TGGCGCAAAGCTTATAAATTGTTGGAGGGGTATGGAGAACGGATACAATACTCAATCTTTCGCTGCGTCATGAATCAACGCGATCGCGAAAAATTACGTTGGGAGTTGGAGACGATTTTGGCAAAAGAAGACTGTATTTTGTTTGTGCGTTTGAGCGATCGTTGCGTGCAAGATATACCCAAATATAATCGACCGGGTACATGGGAAAATACAGATAAGCCTTTTTTGATTGTCTGAAAAATACAAGCATCTGTGTTTGTTAGGGTAATTAAAGTAGACGTTTTCCTTGAAACCCTTACTATTACAACATTTGAGAGATTTTTGAAGCTCTGTAGGTGCTTGCAAAATCTTCAAAATACCTTATATCAAGGGTTTTAGCTGATGAAGTCAGGTTGAATTTGAGGAAGAATTAGAAAGTTTTAGTTTTTGATTGGTTTTTTGGCAAGGTACTTGTAAACTTGGATTGGAGCGCTTGCTTGTCAAGTCTTTCAGCCTTCGCT # Right flank : CGGACTTTATTTAAAGCCTGCGTAGGCAGGCTTTGTTTGTATAGCCCCAGAATTCTATTCTGAGGGCAATCGTCACTCTTTGGGATGCTCTCACCAGTCATGAGGATTTAGAAAAACAACCCTCAACCCAATACTACAAGGGCTGAGAATTTTTGTGGCTTTGGATCGCCGTGAAGAAACTCAACAAATGTCTGTAAATGTTGGGTTTCGTTCCTCAACCCAACCTACCTATTTTCGTATTTCCACGCAAAACCTACGCACTATTGATCCTCAACCTAATTTTAAATGGCGCGTTTTTCAATGTGATTAAACCTTAGATACCGCAAAATGTCACACGGACTTTATTTAAAGCCTGCGTAGGCAGGCTTTGTTTGTATAGCCCCAGAATTCTATTCTGAGGGCAATCGACGATAAGAAAAATAATTTAGGTTTGACTCTCCATGTACCATTTTTGAACTTAGTACTGAATCAGTCCGCGTATAGCCCTTACGGGCATAGCC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTTAACCTTAGATACCGCAAGGTGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 12 3885054-3883628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3885053 37 100.0 34 ..................................... TCGATTAAATATTACAGCCCCAGCGAGAGATAAG 3884982 37 100.0 35 ..................................... AAAAGCATAGAGAATCCCAAAGGGGAACTAAAGTG 3884910 37 100.0 36 ..................................... GCAGATTTTGAAGAAACCAACAATCGAAGAATCATT 3884837 37 100.0 36 ..................................... GTGTAGACTGGGGCACAACCACCCCATAAAAAATCC 3884764 37 100.0 40 ..................................... GGGCACAGATATATAGTTCAAGCATCAATTTCCGCTTCTA 3884687 37 100.0 36 ..................................... CTTCCCATGCGGTAACTTCTTCACCTAAATGATAAG 3884614 37 100.0 35 ..................................... GGGCAAGGGAAAGTTTTGTAGAAGGAGCGATGTTG 3884542 37 100.0 36 ..................................... AGATTATAAGTAGAAAATGGTTGGCAGTGATTGGTA 3884469 37 100.0 32 ..................................... TTTTAATACCTTGCCAATAGCTTTGCATATCC 3884400 37 100.0 34 ..................................... GAATTGGAACAGCAATCCTAATTTCTTTCAAAGC 3884329 37 100.0 34 ..................................... TTAAATGAGGATGGAGATCCTAGTAATTGATTAG 3884258 37 100.0 38 ..................................... ACTCTTTCGATTTTTGCTCGTGCATCCAAACTTCCAAA 3884183 37 100.0 36 ..................................... GCGTCAACGCCAGCAACGACCTCATCAATCACGAGG 3884110 37 100.0 36 ..................................... TTCTGAGGACTGCTGACAATAAGGATATTGCCAGAA 3884037 37 100.0 35 ..................................... GATCTTGATGGGTTGCCTTTTTGTCCGGCTGCAAA 3883965 37 100.0 39 ..................................... CGTAACAACGCCAACAGCAACACCTACAAAGTTCGCCCA 3883889 37 100.0 40 ..................................... TTTGCTAAAAATCCCGACAGTGGCGGTGCATTTGATGGAG 3883812 37 100.0 37 ..................................... ATCAACCCCCAATCTGAAGCCCTTAGAATTGCTGGCG 3883738 37 100.0 37 ..................................... AGCATCTATTTTGCATAAGGAGAAGACAACGAATGAA 3883664 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 100.0 36 ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : AGCGAAGACTGAATAAAATTCGGTTATATGCTGCTAGCAAGGAAAAGACGATTACTCAACTTATCGAAGATTGGATTGACCGACTTCCTGTCTCAGAGATAAACAATTCCTCTGACACCCGTAAAGGGTGTACCTCGTAATTGTTCGGCTATCCATCCCCACCGCATGGCTGATGGGGAATTTCGCCGAATTAGTTAAATAATCATACAAGAAAATTTTGTGCCTCTTTAGACAGGTTATACTTTGGGCAAAGGTGGTAAGTAGGGGCAGTTCAGCGCGGATGGGTAGGTGTTGGAATTCACTTGCGAAGAAAAATGCCTGTATTCCTTTTGGTGTAAGACATAGAGGCGATAGGATCGTCAGACCCATCCGCGCACCTTACCCAGACTCGGTTTCAGCCATTTTCCCTCTAGTCAATCTCAATTTCTCGTGCTATGATTGACCCATCCGCGATTTTGAACCATGACAACCAAATACTGACTCAGTTTCAGGCTCTTGCC # Right flank : TTTTCTGTGGTACCTTAGGCATTGGGAGTTACTCATTGCAAGTTTACTTTATAATACCAATTTAATATGAAGCTGCATACAATTAGCCTGCGAAGGCAGGCTTTGTTTGTATAGCCCCACTCTTCTAGAGTGAGGGCAATAATGTGCAACTTCACATAGAATTGGTATAAATCATCTCTAAAGGCTATAACCAAATGGATTTCGCAAAGTTACTGCTTGTACCATTTAATCATGTCAAGTAGAGTCTTCTGGGCTTTTCATAACCAAATGGATTTCGCAAAGTTACTGCTTGTACCAAGCTTGTCGCCATTGCTTCATTTGTTCAATTTCCTTTTGTTGAGAGCTGAGAATCCCTTTCGAGATGTTCTTAATTTCAGTGCGTTTGGATTTACTTAATGCATCTTGCGCCATTGTTACCGCCCCTTCATGATGCGGAATCATGGCATTGATGAAACGCAGGTCGAAGTCACTATCAGCAGCGCCCAAGTCCATGTCCATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 13 5148450-5146811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 5148449 37 100.0 37 ..................................... TTAGCCAAAACACAAGAGTATGGAAGACAAATGGATT 5148375 37 100.0 36 ..................................... TTTTAATATAAGAAGCCGAGCACTCTACACCGTGAG 5148302 37 100.0 36 ..................................... ATTTTTAAGTCAAGAGAAGGGAAAAGAATGACTGGA 5148229 37 100.0 34 ..................................... CCAATAAAACCAATGTCTTTTTCTGCACCATCAC 5148158 37 100.0 35 ..................................... TCACGGAGAAACAAATTCTTACCTACCAGTCATTG 5148086 37 100.0 31 ..................................... GACCCAGGCTACAAATATTACAAAGTAGCTG 5148018 37 100.0 35 ..................................... TCCCTGAGACGAGCGCGGTTCTGCATTTTCAGATA 5147946 37 100.0 38 ..................................... AATTCCCCACCACAGTGGGCGCAACCGAGGTAAGCAGT 5147871 37 100.0 38 ..................................... TTTTCTAATTTGGCTTAGAACGTAAATAGCCTTGTGGC 5147796 37 100.0 35 ..................................... TTCTAGCTTTTTCCCAACTCGCGATCGCTGCCTCT 5147724 37 100.0 50 ..................................... ACGAGGTAACTTATGTTAGTAAGCAAGCGATTTGGAGAATTAAAAGCAAA 5147637 37 100.0 32 ..................................... TCTATAAGGATTGCCATCTTGAGAAGCGATGG 5147568 37 100.0 35 ..................................... CCAACAAAACCCGCCGAATCCTAGACACGACCTAC 5147496 37 100.0 35 ..................................... ATTACTCCCACAAAACTATAGCTAATATCAATTAA 5147424 37 100.0 37 ..................................... TTGACAGCAAAGAAGAAGCGATCGAAAAAGCAAAGAG 5147350 37 100.0 36 ..................................... ATAAAGTAACTCATTATAATGATCTTCAAAACCTTC 5147277 37 100.0 33 ..................................... CTCAGAACAATTGCCTGTCCTCCTCTGCCTTTT 5147207 37 100.0 39 ..................................... AGAAAAGTTTTGATTCGGTAGAAGAAGCTCAATCATGGG 5147131 37 100.0 35 ..................................... GGATGTACTTGAGCAGATAGGTATGCTTGAAGAAT 5147059 37 100.0 36 ..................................... ACCAGTTGTTGTATCAATTGCCCAACAACGCAATAA 5146986 37 100.0 33 ..................................... TTGCTGTAACACACTTACTGTATTGGCTAAAGT 5146916 37 94.6 32 .....A..................T............ TGTATTGGTTTGATTTTGGTCTAGCTTTTGGT 5146847 37 89.2 0 .....A..................T.......A...A | ========== ====== ====== ====== ===================================== ================================================== ================== 23 37 99.3 36 GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Left flank : AAACAATATGATTACGATATCCGTAACCAACTAATGCATAATTTGTTAGGATTTAACGAACAAGAAGTGATTCAATACTTATTAGGAAACTCAACTACATCAACTTACACAGATGTTCTGACAGCATATCAGCAAGCTGTAAAAGAAAAATTTCTTAATCAAATAGACTGCTTGGGCCTCAAATATAATGAGAGGAACTTGTATGATGAATTAGAAGCGATCGCAAACGATATCACTTGAGCACCGCAGTTGCGCGAACCAGGAGGTGTATTTATCGAACGCTTGTTATATAACCTGCCAATACTTATCAGTCATAGCTTTGGAGCATTTTAGTTAAGATGGGGGTTCGCGGAAACTCTAAAACCCTTGCTATACTTAGCTTTACAGAGATTTTTATGATGGGAGGTGCTGACAAGCGATCGCTCAAACGGTACTTTTTTATGTGGTCCGCGAAAATAGGAGTCAAAAGTCTTGTTCTGCAAGCTCTCTAGACTCCCGCC # Right flank : CAATAAAGTTGCTATAAGTATTTGTAGTAGGGTATTTCGATCTAGTTAAGAAGTCATCTTGACGATTACCCGACGAATTTGGTCAAATTGGAATAAATAAAGTTTTTTTGGTAAGAGTTTCCTAGCAAACAGGTATTTTACAAATAAAATAGGATACTATAGAGTTGACAAGCTCCAAGAGTATTAATTATGAAAACCGAACGCGAACGCGAACAGTTAATCAAAGATATCAACGAACTAATAAATCAAGCTTATGATAGTACTCTAGATGAAATTTACACTCTCTTGATAAAAATAGAAGAAGAAGAAGAGGAAGAAGATTTAAAAGCATACGAGCTTGCTAAAAAAGAAGCAGAAAATGAAGGTTCAGTGTCATGGGAAGAAGCTAAAAAAGAACTGAAAACCGAAAGAAAAAAGGAAGTTGCGTGAATTATAAAGTTGAAATATTAAAAGGAGCGTTAAAACAAATTAAAAAATTACCACTAGAACTTCAAGAACGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 14 5159621-5157331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5159620 36 100.0 40 .................................... AAGAAGATCCGCCGACAGAAAGCCAGTACCTCCGTTACTA 5159544 36 100.0 37 .................................... AACTCATTGCGTCAGGATATGGGTTGTTCATTTTTTT 5159471 36 100.0 34 .................................... TTCCCGCAGGAATCTGGTCTACACCACCTCCAAA 5159401 36 100.0 36 .................................... ATCAAAGATGATCCGCTTAAGCCTACCTACCCTTAC 5159329 36 100.0 37 .................................... CTTTTGGGCGGCTTCGACCAAGCCATGAAAAGCAAAA 5159256 36 100.0 31 .................................... AAGGAGCCTCGCGGGGCGTTTAGCTCTTACC 5159189 36 100.0 38 .................................... CTTTGCTTTCTATTGATTCATTCATGTTGATTGCATAC 5159115 36 100.0 38 .................................... CTTCACAGCCGGCTTGGTGTCGGTCACCTCAATAAGTT 5159041 36 100.0 37 .................................... ACCTCATACTCCTTTTCTTGCAATTCCCGAATAATTT 5158968 36 100.0 39 .................................... TTGAATGTAGTGTCAGACATTTTTTTTGTTTTATAAACT 5158893 36 100.0 38 .................................... GTCAAGGAGGGCGCCTGCTAGACGCAATGGCTAATTGG 5158819 36 100.0 34 .................................... GCGATGTCGGTAATGTTTATCCAAGACTTGTACG 5158749 36 100.0 36 .................................... TTGCGTTCTCTGAAATGTTGACGATTACTTTTCCCC 5158677 36 100.0 38 .................................... GAACTGAGAAGCTGCGGCAGCGGGGCTGTGCCGCAGCA 5158603 36 100.0 40 .................................... ACTTCGAGCTTGGGCCGCTCGGTTGCAGACCCGAAGCTGT 5158527 36 100.0 37 .................................... GTTTGGAGTCAACTTTCGACTCCGCTAGCCAGAAAAA 5158454 36 100.0 33 .................................... GTGTATGCCCAAGCGTGAGTTTGGTTTATTTGA 5158385 36 100.0 38 .................................... GTGAAGGAACTAGCTTGCGGCACTCAGACCGCAAGTGA 5158311 36 100.0 43 .................................... TGGACCTATATGGTCTACATAACCTCCTTTCCCGTCGGAAAAT 5158232 36 100.0 34 .................................... AGCGGAGCACCAGGTAACGATCTCTCCGCTATTG 5158162 36 100.0 33 .................................... CCGGCGGCTCTGGCGTATGCCAGATTTCCGTTA 5158093 36 100.0 37 .................................... TTGTTGGGTAGACAGTGCCACGGTGGCTTTTCTCCAG 5158020 36 100.0 41 .................................... GGCTTTATCTATAAGCTTCGTAGTGGCCTTGCCTGTAAAAG 5157943 36 100.0 37 .................................... TCAAATCCGCCGTTCTCAACCCCGATCCCTGGAGCAG 5157870 36 100.0 33 .................................... TGTATCTGTGGCTACTGCTTTCTGATCGTCCGG 5157801 36 100.0 35 .................................... CTTTTAAGATTCCTAAGACTTGGATGTCAGATAAG 5157730 36 100.0 34 .................................... TAACTGAGATACCCAACCCTTAACCGTTGGGTTG 5157660 36 100.0 37 .................................... TTTACTTTTTATCTTTATCTTTATCCTTGCCTTGCTC 5157587 36 100.0 37 .................................... CTGAGCAGGCAGTAAGGAAGCGAGCAGCACCACGAGA 5157514 36 100.0 40 .................................... TCTCGTTGACGCTGGATCTACCCAAGGCTTAGGCTTTGTG 5157438 36 100.0 36 .................................... AACTCGATCTGAAGGTGAATTTTCTTTTCAGATTCA 5157366 36 83.3 0 ..........................T..A.CT.TT | ========== ====== ====== ====== ==================================== =========================================== ================== 32 36 99.5 37 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : ATTTCAATGCTAGTTGTTGTTGTTTATGATATTCCTAATGATAAGAGACGAACTAAATTATCCAATTTTTTAGAAGGGTATGGACGAAGAGTTCAATTTTCTGTATTTGAATGTTTTTTAAGTTTGGACGAAATGCGACAACTATATGAAAAGGTTAAAAAATTAGTCAAGCCAGTGGAAGATAATGTCCGATTTTATTGGATATCTCAAGAAGCTGTTGAGAGAGTGTTGACTATTGGAGGTGAATCACCTCAACCACCGCCAAACTACTACGTTATCTAGGTTTGAGGCAAATTGAAGAGGAAGTTTTACTAGTTCATCTACACACTCCGGCAAATCGCCCAAACCCTATATTTTTCGTTGAAGTGTGTCGATTGCTTGCTATGTAAGGGTTTGAAGTATGTGTTTTACTAAATTTTCGACAGGATTTACAATGTTTTTGAGAGGTGTGTCGATTTGCAGTCTGAAATCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : TCCTCCATGCTGTACTAGCAGTCTTTAAACTCGGATCTGCTCTAAAGTTCTTACCTGGATCTGGTACAGTGACTTCCTACGCTTTAATGAGCGCAACAGTTTATGCAGCTTTGATCGCAGCAGGCTATATTTATATGAAAGCACTTGCAGCATTACTTGAAAATAGAGGTGCGGGACAAGTTAAAAAAGAGGATCTCAAAGCAGCAGTTGTTCAAGTTATGAACGATAAAGAAGCTGTTCAGTCAATTTTTAACACTGCAAAAGAAAGTTATACGAAAGCAGATTCCGATTTAAGTAGTTTGGCTCAGGAATTAGGTGACCTGAAACAGAAAATGCAGCAAAACGCAGTCACATCAGAACAAATAGATGCTGTAGGAGAGATTGCAGCAGCAGAAATGGCTGCGCTGCAAAACGATCCGCCCAAGACATTTAAACGACTCAAGAACTCTGGCGAATGGGCATTAGAGAACGCAGATCAATTTGAGCTAAACCTTGCAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 15 5807769-5808100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 5807769 38 100.0 36 ...................................... AAGATAACTGGAACATCATTGAAGGTGATGAAACCA 5807843 38 100.0 37 ...................................... TTGAATTTTCCTCATATGATCGACCCTAAAGATATAG 5807918 38 100.0 33 ...................................... TTCTTGCAATGGTGATGGCATCTCGAAGAATAC 5807989 38 97.4 36 G..................................... TACGCTTTAATATCTCTAGAGACTACAGAACCGTCA 5808063 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 99.5 36 ACTTGAAACGTAGCGATTCCCGGCAACGGGATTGAAAC # Left flank : TACCAATTCTATGTGAAGTTGCACATTATTGCCCTCACATTGGAAATGTGGGGCTATACAAACAAAGCCTGCCTTCGCAGGCTAATTGTATGCATCTTCATAGAAAATTGGTATAAGCTGAGAAAGTAGGTTGCTGATTGATTCTCCTTTTTATTCTTTAGCTGCACGTGCTTTACGATTGTGCGACCAGCGATAAGCTGAGTACAGCTTGCGCTTCGCGATCGCTACAATAAACATGAAGATATCTAACCAATTCTGGACGTTGGGATGCAGTCCATCTAAAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGAGGCCTAAAACCTGGGGGGTTCTGCCAAAATCTCCAGAACCTAGACAAGTTAATAGTTACAGCGTTTTGATATTTGGCGCTATTGATATTTTGTGTCAATAAGTGAGCCTGAAATGAGGTCATTTTTTCGATCTGCCAAAACTGCTTGTAGAGTCCTTGCTCAGTAAGGATTTCAGATGGTGG # Right flank : CAATCAGATGGAGTCGTTGAAAATATTTGTCACTTTACCCAGGGGATGGCAGTAAAGTGGAAGCAGTTGATGGCAGTAAAAAAGCTTGAAATGCTGATGATAAGCTTGAGCCGATTATGACAATCACGGAAGCAGTGGATGGCAGTAAGTATAAGAATGGAAGCAGCAAAATGGCAGTAAGTATGTAATCAAATGACAAACAGCTAAAAGCGTGGCAGAGCAATGGTTTTAAAGTTTTACATCATTGAATATTGAGGCAATTCTAGTTGGGAGCATCCTAAAGACGGAAGCGTTGATGACAGATAAATGAGTAGATAGTGGGCTGTTGTACTAAAATCCCATAGTACAAAAGCTGTAAGAATTATGGAATTCCTAAAAAAAGGTATAAATTAATACTAAAGCAAAAAAGCTGGATAATAGTTGTCGGTAGGACGATAATATTGCCGCGTCTGGAACCATTACCTTGCCACCTATTGGGCTGTAATGCTTATTCTTCCGTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTGAAACGTAGCGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 16 5847755-5845663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5847754 37 100.0 39 ..................................... AAGATGAAACCGTACCTACTAATCTTTGTGCTTTTAGTG 5847678 37 100.0 34 ..................................... TTCCATTTAGTAGGAGTTGACTGAACAATGCCAG 5847607 37 100.0 35 ..................................... TTGTTTTTTTGCTACGTAAATTACCAAACTACAAA 5847535 37 100.0 37 ..................................... GTATCCCTAAAGACAGCTACGTTACAGGTAAAAACTC 5847461 37 100.0 33 ..................................... TGTCCACACAGGAGGTCGGCTAAAATTGGTCAA 5847391 37 100.0 36 ..................................... TAGCTAATTCGGATTTAAACTCGTCGTAATAGCCCT 5847318 37 100.0 37 ..................................... TGCCGCTCTCTTGTTCGGATCTTTGATGTCCTCTGGG 5847244 37 100.0 37 ..................................... ATTGTGGTGCATATATTCACAAATGCTACGCCACAAA 5847170 37 100.0 40 ..................................... ATAGTTTGCAGTGTTCCGATTCTTAAGTGCTGGCTGCTTG 5847093 37 100.0 37 ..................................... GTACGAGTAACACCCACGGCAATCCGAGCGCCTCACA 5847019 37 100.0 39 ..................................... GCGGACATTCCCATGATAAAAGCGCCCTTAGCAAGGTAG 5846943 37 100.0 35 ..................................... AATTTTTCATTCCATAGCTCATGAGGTCTTGCCCA 5846871 37 100.0 36 ..................................... TTGATTAATTTATTATTCTCTTCCCAATCTTCTATA 5846798 37 100.0 35 ..................................... TTTTGTTAAGTAGGTTTATTACAATACAACATCAT 5846726 37 100.0 36 ..................................... ATTAATTGAATTTTAAGATTGAATTGCGACAAAAAT 5846653 37 100.0 36 ..................................... ACTCAATACCAAGCTCCTCAGTCGTGCTCTGCCACG 5846580 37 100.0 37 ..................................... CGCAATTTTGGTTTAAATTGGACAACTTCACCTACTT 5846506 37 100.0 38 ..................................... AAATTTTTCCTCAGCGCGATCGCGGGGGGGGATTCAAA 5846431 37 100.0 39 ..................................... AATAACAGCGATCGCGCTATGTGACTGCTATGTGACCGA 5846355 37 100.0 34 ..................................... GTCAAACTCAAGCACATAGAGAAAGTCATGCACA 5846284 37 100.0 37 ..................................... ACGAACGTCTTGTTTGATCAGCTTCATAAAGTCGCGG 5846210 37 100.0 35 ..................................... ATAAAGAATTTATTGTCTTTCGGACACCTATTAGC 5846138 37 100.0 38 ..................................... CTTAAAATATGAATTCCTAATACTAGGCTAACATTGAT 5846063 37 100.0 35 ..................................... CTTGAACTTGTGAATGCCTAAAATACACCATCCAC 5845991 37 100.0 36 ..................................... CAAGCATCTTTAGGAGTAGCGAACATTTTAATAAAA 5845918 37 100.0 36 ..................................... TTGAAGTTGAAATTACTAAAGAATTTGAATAATTAA 5845845 37 100.0 35 ..................................... TTAATAAGTTTAACAATATCTAATGCTGAGTGATT 5845773 37 100.0 37 ..................................... GTTGCCCTGGCTCATTAATCTTATGTGTTCTGGCTAA 5845699 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 100.0 36 CTTGAAACTTAGCGATTCCCGGAAACGGGATTGAAAC # Left flank : GAAACTCGATTGCGAGAAGCCGACTTCAGCTATGCCAATTTAAGCGGTGCTGACTTGTCTGGAGCAGTCGTTGCTCTTGCAAACTTTACCGGAGCAAAATACAGCCTTAGTACAATTTTTGCCGAAGATTTTGACCCCATTCAAGCAGGTATGCAATTAATTCATATACCATCTTAGGCTACCAACCTCCTTGCAGCAGGCAATTATAGGCGTTGGCGATCGCTACAATTAACATGAAGATATCTAACCGATCTCTGGACGCCCAGAAGCAGTCCATTTATAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGGGAGCTAAAACCTAGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTGTAGCATTTTGAGATTTGGAACTATTGATATTTTATGTCAATAAAGCAGTCTGAAATGAGGTTATTTTTTCGATCTGCCAAAACGTCTGGTAGAATTCATGCTCTGTAAGGGTTTCAGATGGCGGA # Right flank : GATTGATTACACGATGAACCGTGTCACTTTACCCAGGAGATGGCAGTAAAGTGGAAGCAGTTGATGGCAGTAAAAAAGCTTGAAATGGTAATGATGGCGTTGAGCCTTCTTAGGCGACTATGACAATCACGGAAGCAGTGGATGGCAGTAAGTATAAGAATGGAAGCAGCAAAATGGCAGTAAGTATGTAATCAAATGACAAACAGCTAAAAGCGTTGCATAGCAATGGTTTTAAAGTTTAACATCATTGAGTATTGAGGCGATTCTAGTTGGGAGCATCCGAAAGACGGAAGCGTTGATGACAGATAAATGAGTACATAGTGGGCGGTTGTACTAAAATCGTGTAGTACAAAAGCTGTAAGAATTATGGGATTTCTGGAGAAAAAGGTATGAATTAATACTCCAGACAAAAAAGCTAGATAATAGTCACCGCAAGGGTTTGATTGATGATAAGCCCAATTTTTTTTGAAGCAGTTGGTGGCAGCAAGTAGAAGAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGATTCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 17 6410112-6409847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6410111 37 100.0 42 ..................................... CTCTTTCTTAAACTTAACTAAAAAATTGGCTTTGTCTTTTCT 6410032 37 100.0 37 ..................................... GACTGATTAATCGCTTCATTTTCCAATGTATTGCTAT 6409958 37 97.3 38 .....................T............... AATTGAGAAGTTACAGGAATACTACCAGGTCTGACTCC 6409883 37 91.9 0 ................T.....A....G......... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 97.3 39 ACCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Left flank : GTGTTTTTTGCTTGTAGCGAATGTAATTTCAATCGGGTTTAAAGAACGTCCTGTTGGCTTTCCATCTTTTAACTCAGCTGGTGTATATTGTAATGAACTTTGTTCGCACAAAGAAGCAATAGCCATTCCTACACTAGCCTGAGCAGTCATTCCTGTAAAATCTGCAACGACATCCTCTATCACCCATTCCTGGGGCAAATAGTTATAAATTTTTCTGACTTCTTGATAGAACTCTAAAGGCTCGTAGATATCGTTAATAATTATTGGTTCTGGAATCTTTAGATTGGGAAAATCTTGTTTTAACTTTTTTGCTAAATCAAGGGTTTGCGAAGAACAAATTAACCAACAACGCTCCAATTGTGGGAGATGATATTCTATAGCTTTTCGACAAGGTTCTTCCCGGCTCACTAACAATATGAGTCCCTTGTGCTTTACAGGAGGTAATTTGTCTAAATCAATTTGGGGCGATCGCCCCAAAGTTAACGATTTAGCTGCAGTTA # Right flank : TCTTTGGTATAGCGATCGCAATTTTAAGTATAAAAATTAACAGAAAATGTCCGTATTGACGGAATTTGGCAAATACGTATAATAATACGTATAGTGCGTGCGTTAGATTTTTGCATTCTAAAACGCACATAACATATGAGTTCTACTATGTTGAGTTGTATTTATTCAGATACACTATTTACAGCGACTGAGCTAAACCGTCAACCAGGAAAAGTACTAGACCATGCTTTAGAGCATCCAGTAACAATTACTCGTAACGATGAGCATTTTGCTTTGCTGCGTCGTGAAAAGGTTTCTTCTCTTGCCAAAGCGGCTCAAAATGGTGAATACCTTATCGAGCTTTTAAGCGCTGCTTTTCGTTTACGTTTAGATGAAAAGCTTGGTAGCGAACATCCACATGGCTGGCTTAAAGTATTTGACAAAGATGAGCTTCAAGACTTTACCAATGAGGTAACAGAAGCTTATCGTTCAGCAATTTTGTCTGAACAAGCTTGGGATGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 18 6697742-6696230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6697741 36 100.0 38 .................................... GGGCATCTTACCCTTATGCATGCGGCTGAGACCGATTT 6697667 36 100.0 36 .................................... GCGATCTGCCAGATATCCTGTTTCATTGTTTTTTGG 6697595 36 100.0 36 .................................... TCAAACCCAGACAGATTGTAGATGTTATCCCGAAGG 6697523 36 100.0 36 .................................... TGTCTACCCACCATCCTCCAATATAGGGATATTCAT 6697451 36 100.0 38 .................................... AACTTAGGAGCCTGTTCTTTAAAAATGGCGAGTGCCTG 6697377 36 100.0 36 .................................... CATTAAATTGTCTATCCCCATGTCAATTGCTGCAAT 6697305 36 100.0 38 .................................... TCTAGGGTCTTGGGTTGCCCAGCCCATTGGCTGGAAAC 6697231 36 100.0 38 .................................... TTCAGTTTACAAACAACAATGTCAAGTTTTTTAAGAGA 6697157 36 100.0 36 .................................... GAGGCTGATTAACGCCAACTTTTAAATCCACAATTG 6697085 36 100.0 40 .................................... TTTGACTAACGATAGTCTCCACAAGCAATTTAGTAAAAGG 6697009 36 100.0 38 .................................... GACAAGGCATTGGGGGCAATGCTCAAGATTTGCTTCAC 6696935 36 100.0 42 .................................... GTCGGGGTGCATCGACAAATCTCTCTTGTGGGCAGTCTGCGA 6696857 36 100.0 37 .................................... AACTTAAAACTAATCTGCCATTTTTGAGCAACTCTTT 6696784 36 100.0 35 .................................... TTACAAGTATAGTTTCTATTTAAATTTTTAGCGAT 6696713 36 100.0 41 .................................... ATTGATATCTATACAATTAACAACACAAGAGTAAACATTAT 6696636 36 100.0 39 .................................... TTAGTTTTACCGACTGCTCCACCACTGCTGTGCTTGCGG 6696561 36 100.0 39 .................................... CAATTGAATTGACAGGAATTCAAATATTATGTAAATTAG 6696486 36 100.0 36 .................................... TAAAAAATTCAAGTTTGCAAAAGTAACCGTAATTCA 6696414 36 100.0 38 .................................... GAAACTGAACATCCCTCTTTTTGCCATATCTTCTTCTT 6696340 36 100.0 40 .................................... CCAATTCTTTCAACTGGGAGCTTGGCTTCTTGGCAGAAAT 6696264 35 88.9 0 ............-...A................TG. | ========== ====== ====== ====== ==================================== ========================================== ================== 21 36 99.5 38 GTCCCTACTCGTTAGGGAAACTAATTGATTGGAAAC # Left flank : CATTCCAAGATGCCCAAGTTGCAGACAAGTTATTTACATCTGAAAAGAATGCTGCGGGAATGCAAACAGCGCAAGCATTTATCCAAGAATTACAAACACCCTATATCGATCCCGCACTCAAACCTGCTAAACCCACTCTTGTGGATTTTGTAGGAAGTATTGGTTCCCTCTTACTGCAATTTTTGCCATTTTAATATTTTGTTAGTTGTGAGTAGGGTAGGCAATGCCCATCAAAAGCTAGTTTTCACAAAACTCAAGCAAATTCCTCTGTATAAGGAGAGTAACAACTTATTTTTGTGATTCGATTATTGTCTAATTAGCGGCGAGGGGGTCAGCAAAACCCTGAAATACTGATTCTTCCGTTGACCCCCTCGCCGCCTTACTCAGTAAGCATTTCAGCGATTTATATGATGAATTTTTTCCCGGTTCTCTTCCTAAATTCTGACCCCCTCGCAAACTGCCCCTGGACTCCTTGCGGGGTAAGGGTCTAAACTGGAGGG # Right flank : AATTGCGATCTCTAGTCCCAAACTGCCAGCAGCTTTTAGTGCCGCAACGGATGAAGTCCCATTAACTAAACCATCTAGTGGAGTGCTGTGTGAGATCAAATCCGTTTTTATAATCTCTCTTAGCCCTAGTGATTGGAAATCACAGCTATACAAACGAAGTCCGCCTGCGCGGACTTAATAAAAAGTCCACGTAGGTGGACTTTGTTTGTGTAGCCCCAGAATTCTATTCTGAGGGCAATTGCAAATTTGGCATGCTCCCGGATAGAATTCTAGTACAAATCAACGATGTAAAAATTTGGTATGACCTACCAAACTAACAACTAAAAACTAACCACTATCCAATACTACTTGGATAAGAATTTTTCTGGCTTTGGATCGCGGTAGAGAAACTTAACAAATGCTTGTAAATGTTGGGTTTCGTTCCTCAAACGCCACGTCACTCAACGGGGGGAACCCCCCGCACGGCGCTGCTCTCCGCACGTGAGTGGCTCCCCAACCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTACTCGTTAGGGAAACTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 19 7158537-7158786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 7158537 36 100.0 35 .................................... GAGCCGCCCTAGGCGTGCCTCAAACACCAGAGACG 7158608 36 100.0 37 .................................... AGGACTGTGTACATTGCGAATGCATCTACTCAGTTGG 7158681 36 94.4 34 ...G................A............... TTAACTTTAGCTTCTCCACCATTAATTGAACTTT 7158751 36 97.2 0 ........................C........... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 97.9 36 CTTTACACTTCCCCCGCCCCGAAAGGGGATGGAAAC # Left flank : CACTCCTTTTCCATAAGCAACGTAGGCGGAATCTGCAACAATTCCAAGTAAACTTATTGAAGTTTTTGCAGGGTTTAATATTGGTGAAGCTGTTAGCTTTGGTGTTGGAGTTTGAGCAATAATGAATTCTAGAAGTGAGACACATTAATTAAGGGTAGCCAATCCATAGTAGATTTCACAAGCAACCTCGTTTATTATACGTCTGTTCTGTCAACTTCCTTTTTCCTGATTTATACTCATATATTTATAATATATTGTAACATTCTTGACAATCTAAAGCAAAAAATCGTATCTTTAGTGTGAGTGTGCTAATCCAAATCTACGCACTTCACTCGATCCTTGAAAACCCTATAACTTCGTTAAAGTGTGTCGATTGCATACGGTGCAAGGCTTTCAGGCTACGAAAATGACAACTTTTGGAAATTTTTTGATAAGTTTTAAGAGGTGTGTCGATTGAGGGGTCTGAAACCCTCTTCCAGTAAGGCTTCCAAGAGTGAAAT # Right flank : CAAAGGACAATTCAGACATTCCTGTTCCCCGTTTTCCCCTTTTTGTTGACTCCAAGCAATTACTCCTGGATTTGGTTGAGGGCGAACCAGTTCGCTGATGATATTGGTGTCACATAGAAAGGTCATGGTGCTAATCGATCAATGGATTGAACCGCTCTTACCGATCTTACCGAGCAGGAATTTCCAAGGTGTAGTCTTCCTCTACACAGATCTGACGTAATTCGGCAAAGGCATTAGCTAGGGAGTATTTATGATGTTGGTTTTTCCATTCCAGTAATTCTTGGAATAGTTCTGGCTCTACCACAGCTGTAACCAGTCGCTCCCGATCGTAAATTAGTTGAGGCTCTTCACAGCATCGTCGATTAGTTGAGAGAACTGCTGTTGGGCTTGCTCAATTTTCCAGTTCATAGACTTGAGTTACTTGCAATCGCTAAGACAAAAGTCATTTCATCACAAGATGAATATTCTACTCTTCATCCTCTGTTTTTACTGTTACTGTA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACACTTCCCCCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 20 7549233-7548906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 7549232 32 96.9 40 ........A....................... AACCCTCCTATACCCGAGCAAAGGTCTAGAACTTTCTTTC 7549160 32 100.0 44 ................................ TCTGCAAAAGTGCCGTTATTGCATGCTGGCAATGTGTTACTTTC 7549084 32 100.0 42 ................................ CAGAGAGCGATCGCTCGTTTTGTACCAAAAGCTGTGACTTTT 7549010 32 100.0 41 ................................ TGACTTCTATAGAGCAAAGCGTTTTTCTAGGCGTAACTTTC 7548937 32 78.1 0 .............TTA.C...AA........T | ========== ====== ====== ====== ================================ ============================================ ================== 5 32 95.0 42 AATTAAATGAAACCCGGTAACGGGATTGAAAC # Left flank : CCAGTGGTGTCCGTTTAATGGTTAATGTTTTGACCGTTCCTTCAATTTCTCTGGACTTCCAAAATTGATAGACTCGATTTCCAATCTTGATCCTATTAGCACCCAGAAACTTGTATCCTGCTTGTTTGAGAGTGAAGGATCTGTACTTCTTGATTTTCTTGAATCCTGGTGGACGAACCCCCTTTTTGTTGTACTTGAAAAATAATTGGTACGCTTTCTCAATGCGCTGACAGATGTCCTGTGCTGCTTGAGAACCCACCAATTGCCAAAACGGGTTCCGCTTTCGCAATTTAGCAATATGAGATTGAAGCTTTGCACAATTCAAGTGCTTGCCCCACATCTTGTAGTACCGATGATGCAGGGCAATGCAATGGTTGTAGATAGCCCCTGACGCGTTAATCGTTCGCTTGAGGTGTCTATTCCGCTTGTGTTCGTACAGCTTAAACTTCAATGATTTCATGTTATTATTGTCCCACATTTGTCGGCAATATGACAGCTTC # Right flank : ATGAAGGAGGAGCGATTTATAGATGAATATCCTCGCCCTCTTTCAATTAAATGGACTCTCTTACTCTGTGCCCTCTGCGTCTCTGCGGTTTAACATACAAATTAAATATGGAAGAGGGATATACCATTTCTGTATAACGATGCATCTAATTAGCCCGCGCAGGCGGTGAGTCCAGCCCTGTAGGCGGGTTTCCCGCCGTAGGCGACTGGCGAACCCGGAGGGCGAACCCGAAGGGGCTTTGTTTGTATAGCCCCACATTTCTAATGTGAGGGAATTTGAAACGCCACTGCGAAAATAGAATTCTCTTGCTAAACAAACGACGCGAGCTTCCGCAGGCTCTGCGATGAGTCCGCGTAGGCTGACGAGCGTTTGTGTAGCTGCAATTTCAACCGCAAGCGCATTTTTTCCACGTTGGGATGCTCCTGACGAGTGGAGTATTTTGAGGAAATCGCAATACAAAGAAAGTTGTATGGCAATCAATACTACAAGGGCTGAGAATT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAAATGAAACCCGGTAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 21 7652857-7654479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7652857 37 100.0 35 ..................................... AAAAAGGAAAAGCCCAAGCCAAAAGGGTTTGGGAA 7652929 37 100.0 35 ..................................... CCTCTGGATTGGACGGCTATTCAAGGGGAGATTGG 7653001 37 100.0 39 ..................................... ATAATGAAGCTACACCCAAGTACAACAAAATGGAAGTAT 7653077 37 100.0 35 ..................................... TGGCGAATACAAGTACGAAATAAAAACCCCCACGC 7653149 37 100.0 36 ..................................... GGATAGTACAGCATTGCAATACAAATGTATACGCTG 7653222 37 100.0 35 ..................................... AACCAAATTGAAAACCTGGGGCGACCCAGGCTTAC 7653294 37 100.0 38 ..................................... CTTTCTCCCAATACCCCACATACTGAGCAAGTCTTAGA 7653369 37 100.0 33 ..................................... AACGAAGCGTATACATCAAAAACAGTTAGCTGG 7653439 37 100.0 34 ..................................... CGGCTTCCTCTCTATACTTGGGTGAATGAGCTAG 7653510 37 100.0 34 ..................................... TACGGTACTTGCTGACGAAGGTCTACAAAAAATT 7653581 37 100.0 37 ..................................... AGTTTCAATCCTGGGAGGGGGTCAAAGAGCGAGATTG 7653655 37 100.0 36 ..................................... TGTGGAAATCAATTACCGAACAATTGACTGATGAAC 7653728 37 100.0 39 ..................................... AGGACTTGGATCTGGTAGTTCACCAAGCAATCTCCGGGC 7653804 37 100.0 33 ..................................... CTAATGGATAAGTTCCACCAGAAAAAGTAGTGG 7653874 37 100.0 34 ..................................... TGGGCTTTCCATTTTTACACAGAGAGACGTAATG 7653945 37 100.0 32 ..................................... CGGACGCTTCACCATAAGATTCAAAGTAAGGG 7654014 37 100.0 33 ..................................... TTAGTCGTATGTGCAATATAAAATATGTGACTA 7654084 37 100.0 37 ..................................... CTACAACAAGATTTGGCATACCCGACTGGGTTTCCAC 7654158 37 100.0 33 ..................................... CTAGTAGGTCTACCTACAGGCGGTGCTGTACGC 7654228 37 100.0 36 ..................................... AAAAATCACAGGAGAAGAAAATGACGACTGTCGCTG 7654301 37 100.0 31 ..................................... GGATTTGGGTTGTTTGGATCTAATTCTGGAG 7654369 37 100.0 37 ..................................... TGGCTTGACTTGCACTCCTTCAAGCGATCGCTCCCAT 7654443 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 100.0 35 GTTGCAACTTATACGAACCCCTTTTAGGGATTGAAAC # Left flank : AGAAGGTGAATCGGGCGCATATCAAAAACCCGTCCAAGCTTCTCATGCTGGAACAGTTTATATTGTTGCAGGGACTTCTGGTCTTGCCGATCGAGTATCCCCCCATCCAGCAATGTATACTTCACTCAGTATTCCTGGCTCGCTAGTAATAGATGCACACGGGAAAAGACTTCATGTCCAATTTATTGATAACGAGGGCAACGTTCGGGATGAGTTTACAATGGTGAAAACTTGCTCTTGAAGTCCAAGCTAGTTGTGATTTTCTTTATCAAATTCGCGGATGGGTAGCTGTTAGGAAAGAACTTACCCAAGAAATGCCTGAATTTCTGTTGGTGTAAGGTTTGGAGGCAATTTTCTAATCAGACACATCCGCGCTTCTCACCCAGACTGGATTTCAGCTATTTTGACTCTACTCAATTTCAATTTGCCGTGTTAAGATAAACCCATCCGCGATTCTGAACCATGACAACCACATAGAGATAAGTTTTCCAGATCCTACA # Right flank : CTGAATGGAATCCCCGTATTTTATGTAAAGACGAACATTGCAACTTATACTCAATCATCTTAAGTCGGTACAAGCTTGGGATAGTGTTACATAATCCACTCGTTCTAAATCATCACGTTTGAGCCAGCTAGCAACAGTATATTTTTTTTCACCTTTAAATCTATTTAGCAAATAAAAATCAATAACTAAAACATCTTGCTCTTGCAAAAATTCGTTAGTAAAGGCATCTGGATCTTGGATTTGATCGGCTTTTAGTTTACGAAGATGGGAGCGAAATTTACAGAAACCATTTTCCGATCTGTACTCATCTTCATCTCTATTGTTGGAAGATTCTATTCTATTATTAGGAAATTGTATTATTAAATCATAATCTCCTTGCTCAGCATAAAGCCTTTCTATCGATTGACCATTATTATATAAATGATATCCACTATAACAGCCAACATCACTAGCGATAAAATAGATAGATTTTGTGTGTAACCATAGAGACATTGATTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACGAACCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 22 8522891-8522055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8522890 37 100.0 36 ..................................... GCATAAACCCAATTTTTATTGTGAGGATGCCTACTT 8522817 37 100.0 36 ..................................... AATTGCTTCCTGAGTTAATGAAGCAAATTAGCAGAA 8522744 37 100.0 36 ..................................... CTCTTGATTCCAAGTTTTTTGAAGATGCTCAATATT 8522671 37 100.0 36 ..................................... AAAGGATAATTGTAGACCCTATTTTAATATCTTCAT 8522598 37 100.0 35 ..................................... CGGTTGACTGACCGCGATTTCATAAATGGTCGTTT 8522526 37 100.0 34 ..................................... ATTTGATTAAAGTTGCCAAAAAAGCAGCCATTTG 8522455 37 100.0 36 ..................................... ATGTGGTTGTGTGCCTTTCCTCCCTGTACTCCACAA 8522382 37 100.0 34 ..................................... CTTGGTCTAATGCATTGAGTGTATTGATTGTTGC 8522311 37 100.0 36 ..................................... TTGCCAATCTATCGGAACGGGCGCTTGCAACTACAA 8522238 37 100.0 39 ..................................... TTTCAGATAGATCTGAAAATTGACTTAAATCTGGATTGA 8522162 37 100.0 34 ..................................... AAGAAGCAACATCGATTCATGACCAGACGTTCCA 8522091 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 36 CTTGAAACTTAGCGATTCCCGGAAACGGGATTGAAAC # Left flank : GCAGATTGAATTGTGTGCGGGATATGAGAAGGCGATCGCAGACAGTTGGCGGTGTATGGTACGTTTTTTACCGAATGGCGATCGTTTGCCAGAGCCGAGTTTGAGCACACGTGTTTACAGCCTCAAAGAGTTCGATTTGAATAAATTCGATCGCGATGAAATTGAGTTTTTGCAGCTTTATTCTTTAGTTGTACGTGCTTTGCGATTGTGCGACCAGCGATCGGTTCAATTAAGATGAAGATATCTAACCGCTTCTGGACGTTGGGATGTAGTACGTCTATAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGGAGTCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTGTAGCATTTTGATATTCGGCACTATTGATATTTTATGTCAATAAGCGAGGCTGAAATGAGGTCATTTTTTCGATCTGCCAAAACTGCTTGTAGAGTCCTTGCTCTGTAAGGGTTTTAGATGGCGGA # Right flank : CAATTGATTGAAGGTTGTATTGAATGGCAGGAACTGTCACTTTACCCAGGAGATGGCAGTAAAGTGGAAGCAGTGGATGGCAGTATACATGAGGAAATAGACTAATCTCCGGCGATAAAAACCGTCATTTTCCACTGCCCTTGCTTGTTCTCAAATCGAGCGCGATATCCCGCAGGATAATAGGCATAACGACTGGAAACATAGCCCCGTTGACCTGTAGGAGTAATAATTGGCTGCCAGCCTTCAAAGGTTTGCTGTTCCTGCCGTTGCTGTTGAGTCAGGCGAGAGAATCCACTCGGATCGGATTTAACAACCTCATCTGATAAAACTCCAATGACTTGACTATCATTGCGCGGTTGTGCGCGAACATTTATATTTTCACCCACGATGTAAACATCGGTAAAAGGATCGCCTAAGGAAGCTTGAGACACGTGCGGGCATTGATAGGCATCCAATTTAACTCCCGCAGGGGCTTCATAAGGGGTACAGCCAATGCTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGATTCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 23 8657882-8656904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8657881 37 100.0 35 ..................................... TTTTCCCTGAGCTTTGAACTTTCTGCGGCAAGCAT 8657809 37 100.0 37 ..................................... GGGCAGGTGCTATTTTGATTAAACCCAACTCTTCAAT 8657735 37 100.0 37 ..................................... GCCATGTAAAGGATGCCAAAGTTTACTCGCTTGGCAT 8657661 37 100.0 37 ..................................... CTCACTGCCTAACTCAATTCAATCCCAAGCACAACAG 8657587 37 100.0 34 ..................................... AAATTGAAGCCTGCGAGGACATGGATTGATGCAA 8657516 37 100.0 34 ..................................... TCTTCTTCCTCTACCTGACAATCCCATAGATTCC 8657445 37 100.0 35 ..................................... TTCTTTTTAGAGCTTAGAGTGCGATCACAATCCGC 8657373 37 100.0 37 ..................................... CTCAGCCCCAGCAAAGGCGCAAAATTAATAAGTGGTG 8657299 37 100.0 35 ..................................... TTATTGCAGTTATCACGACAAACAGAAAGGTTTGA 8657227 37 100.0 37 ..................................... ATATTTCCCCTTCCCAATAGCGATAAAATAATTCAAG 8657153 37 100.0 35 ..................................... TGTTCAACCACTTCATAAACTTTGAACGCTCGAAG 8657081 37 100.0 35 ..................................... GAACTAGCAAGATGGAACGAGAGAGAAGTGCAAAG 8657009 37 100.0 32 ..................................... ATGGGCAAATCTAAGTATCCGCTAACAAATAT 8656940 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.8 35 GTTGCAATTGATACGAATCCCTATTAGGGATTGAAAC # Left flank : CGCCTCTACAGGTATCCAAAACTGTCGAAAAACTTTCGTCGTGTAGTATACTAGTGTTTTAGAGATTCTTTGAAGATGTACCGCCGCAGAGCTAACGAAGTGTTCAAATTTGAAGACTTCGTCGCTGAAGTGCGATCGCTCTTAGCGCAAGCTGAAAGAGCGCTTATCGCATGAAGGCGCAAGCCTTAGATGTGCTTATCGCGGTCGCGCCCATCTAATGTTGAGTACAATTGAGAAGTCAGATGAATTTATGATAGTACAAATGTTTTAAAAAACGCGGGTGGGTAGGTGTTCAAAAACGCTTAACTCAAAAAAGACCTTCCATGCCAGAGTACGTCAGGGTTACAGCCAAATTTTTCTGACTACCCATCCGCGCTCTCCACTAGGTAAAGGTTACAGCCATTTTCTCTTGACACTACCAGTCTCAATCGTGTTACCATAAACACATCCGCGCTACCGTACCTTGAAAACCAAATACACAAACCCTTTCAAAAGCCAGC # Right flank : GTCACTGGGATATACCAAGACATCATTTGTATGTCCATAATTGAAATCAGAAGGCTCATGATGATGAAACTGGGGATTTTTTAAAAGACGGACGTGCCAGGGTTTGCATACCCTACGTTAATTATCTGGGTTGAGTACATTGACACAAATAGTACTTTTATACTAAAGTACGGTAAATTGATTGGCTTTTAGTAAAATTCCAGATATTAAAGTTTGACAAAAAATCGGTATCAACATGAGAGGCAGCTAGTCAACATGAGCGTGACCCAGAGTTTGCAATCTTTTAAGTCTAGAAATTACCGTCTATTTTTTAGTGGTCATAGTTTATCTATGATTGGTAGTTTTATAACAGAAACTACCTGTGCATGGCTAGTTTATTCTCAGACAGAATCAGTAGCTTTACTAGGCTTAATTCGTTTTCTAAGTCAGGTTCCTAATTTAATAGTTAGCCCTTTAGCTGGTATTTGGATAGAGCAGTTTCATCGACGTAATATTCTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTGATACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 24 8707392-8708735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8707392 37 100.0 35 ..................................... CGCACTTACCAAGGCAGTTTCTCTGAGAAAGAAGA 8707464 37 100.0 38 ..................................... TAAATGGCGAACCATCAAGCTTGCGAGTAGAACCCCAA 8707539 37 100.0 36 ..................................... CTGTAGAAGCGTTGGTGCAAGATGTGCTAGATACTC 8707612 37 100.0 39 ..................................... TTAAACGACAAACCAACCCAACCCCAAGCATCTCAGGAT 8707688 37 100.0 35 ..................................... CGACTACTTCAACGCACAGGGTGTAACGAGCGCGT 8707760 37 100.0 34 ..................................... GGGACATCAGATCGCATTATAACTTTAACTAGTT 8707831 37 100.0 35 ..................................... ATAAGGAACTTCTTTTATGTCTAGATCGATGTCTA 8707903 37 100.0 34 ..................................... AGAAAAGTTGTTGACCCAATCATCAATCAACGCA 8707974 37 100.0 37 ..................................... GGGTTTACACGCAAAAGAGTGTGAATGAAGCGGTGTA 8708048 37 100.0 36 ..................................... AGGCTTCCATTGGTATTGATTCCATTGGCGGGAGGG 8708121 37 100.0 34 ..................................... GTTGCTTGTGTCAATTAAACTTTTATAAACTAGT 8708192 37 100.0 37 ..................................... CAGTGATAATGAAAGTTTTGGTGTAGGGTTGCCCGAA 8708266 37 100.0 31 ..................................... GAGCGATCGCATACAACTGACCGTGTGCTGG 8708334 37 100.0 35 ..................................... TTGAAGATTGGCGTTCTTCCTCCTTAACCTCATTA 8708406 37 100.0 35 ..................................... TGACTCAGGAATAAAATTTGCGCTGGGCAAGACAA 8708478 37 100.0 37 ..................................... AAAAAGTAAGTTGTGGGAATCAGATAATTGCGTGAAG 8708552 37 100.0 38 ..................................... TCACAGATTCTTCTTTTGTTCATTCCCCACATCATTGT 8708627 37 100.0 35 ..................................... ACAGACTCGCTACCGCGACCTGTATCGTTGATAAT 8708699 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 100.0 36 GTGGCAATTTATACGAATCCCTATTAGGGATTGAAAC # Left flank : ACCCTTTGGTTATGCCGTACTCCTATACCAAGAATGCGATCGGCCCTAAATACATAGTGCATAAGTTGATTTGTCTTTCTAATGCAAAAGATTGCACTTACCGTTAGACACTAGAAGGACTGACTTACGAAATAAGGGGATAAACTTAGCTTGAAAAGCTAATGAGATAAAGTGTGGAATACACCAAGGTCAAGAAAAACAGCGTTCATCATCCTTTGGTGTTGAGTAAACTGAAAAAGTAAGATAAAGCATATAGTACATATGTTTTATAAAGCGCGGATGGGTAGGTGTTCAAAAACGCTTAACTCAAAAAAGACCTTCCATGCCAGAGTACGTCAGGGTTTCAGCTAAATTTTTCTTTCCAACCATCCGCGCTCCCTACTAGGTATAGGTTTCAGCCATTTTCTCTTGACACTACCAGTCTCAATCGTGTTACGATAAACCCATCCGCGCTACCGCACCTTGAAAAATAAATAGAAAAACCCTTTCAAAAGCCAGCA # Right flank : CGAACCTGCACCGCCTGAGATTGGGAAATAGCGCAAAGTATTTGTGTGGAATTGCGCTGAGTTCTTTAATGTAGAGAATTAGGAGCTAAGAACTGGGGACTGGGGATCTGACAAGTATAGATTTTGGGGTGTCGCCTACTGTCACCCCAAACAGTTATAGATATAAGTTATCACTGTTCACCGTTACCTGTTTACTGTTTACTTGTAACTATTCACTGTTCACTGTTCACTGATAATGGTTCACTCTACCCTTGTAGCAACACTCTATGTTGACCCAGTAATGGGGAATGATGCCAATTCTGGAACACGGTCAAACCCCTATCGAACTCTGACCCGTGCTTTAAAAGCAACGGCATCAGCTAAAATGATTCAGCTTGCACCCGGAACTTACAGCACTATAAGTGGTGAAGTATTTCCCCTTGTGATTCCAAATGGGGTAATGGTGCTTGGGAATGAAGCAACCAAAGGTAAAGGTATTTTGATTTCCGGAAATGGTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAATTTATACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 25 8803574-8802664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================== ================== 8803573 37 100.0 37 ..................................... AAACGTTATTGCTTGTTTGCAAATAAATATCCGGCGG 8803499 37 100.0 104 ..................................... CAGAGGGTACTTATCAATGAATTATCCTAAAACTTAATTCATCATACACCGCACCGTTGCTAGATTGAAACCAGAGGGTACTTATCAATGAATTATCCTAGCAA 8803358 37 100.0 36 ..................................... ACGATATACTTTGGCTTGGACTCTTTGATAACCCTG 8803285 37 100.0 35 ..................................... TAAGTTGCAACCTTGGAATTATCCAGCAACCTAAA 8803213 37 100.0 36 ..................................... TGATCGCACCTTACGTAGTATAAAGACTTACTTAAA 8803140 37 100.0 35 ..................................... GAACTTAACTTTCAACTGGGTTCCGATAACGCTTG 8803068 37 100.0 36 ..................................... TTGTTATATCCAAACAGTTTAATTCCAACGTAAGGT 8802995 37 100.0 41 ..................................... TTGTTTTGGGCTTGGAAGGCGTTGGAGACATCATCTTTGAT 8802917 37 100.0 36 ..................................... AGAATATAGAAATACCAATGTTTGCGGGTAGCACTG 8802844 37 100.0 33 ..................................... CAATCGCTTGGAGAATTAACAAACAAGAAGAAG 8802774 37 100.0 37 ..................................... AATCCACGAGTTCCAGGCGGCGGCTGAAACTTTGCTG 8802700 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================================================================================== ================== 12 37 99.8 42 CTTGAAACGCAGCGATTCCCGGCAACGGGATTGAAAC # Left flank : CCGGTGCTCTAAACCCAAAAGCGCTATCGTCAGCAAGTCTTGTATTTCCACTGGTTGATATGGATGCTAGGGTGTCATTGTTCCCTTTTTTTCCTGGATTTGTTAAATATTTTTCGATAAGTTTGTACAGTTCGCGCTCAATTTCCAACGCTTGAGGCAGGAGCGGCAGTAGGCGATTGATTCTTTCGAGTTCCGTGGCATTCACTACCCGCTCGGCGATCGCTACAATTAACATGAAGATATCTAAGCGATCGCTGGACGCCCGGATGCAGTCCGTCTATAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTAGGGGGTTCTGCCAAAAACGCCAGAACCTAGACAAGTTAATAGTTGTAGCATTTTGAAATTCAGAACTATTGACAGTATATGTCAATAAGCGAGCCGCAAATGAGGTCATTTTTTCGATCTGCCAAAACGGCTCGTAGAATCCATGCTATTTAAGGGTTTCAGATGGCGGG # Right flank : ACGTTTTAGCTGCTATAGGAATAAAAGATGCTGTCACTTTACCCAGGCGATGGCAGTAAAGTGGAAGCAGTCGATGGCAGTAAAAAAGCTTGAAATGCTGATGATGACGTTGAGCCAAAGAGGCGATTGTGACAATCACGGAAGCAGTCGATGGCAGTAAGTATAAGAATGGAAGCAGCAAAATGGCAGTAAGAATGTAAGAGATAGACAAACAGGGGAAACCCTGAGGTAGCAATGGTTTGTGAGCTTGATATCATTGAGCATTGAGCATTGAGACGTTGGTTGCATATGGAAAAAGGAAGCAACAATGGCAGTCAAATGAGTACAAAATTACTAAATACCGGAAATTCTCATAGTACAAGAGATGAAAAAATCTAAAAGTTTCTGAGAAAAAAGTAGGAATTGATCCAGGAACTCAAAGAGGTGAATATTACTCCAGGTAAGGGTTTGAGCGATTCTACACCAAATTGTATGGAAGCAGTTGGTGGCAGTAAGTAGAA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACGCAGCGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 26 8805788-8805309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEG04000001.1 Tolypothrix bouteillei VB521301 NODE_1_length_9494340_cov_10.278967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 8805787 37 100.0 35 ..................................... CCAAGTTGCGCCTGCAAATACTCGATTGCTATCAA 8805715 37 100.0 38 ..................................... CCTTGATTGACTCACTATCTTTCTGATCCACTTTTGAA 8805640 37 100.0 34 ..................................... CAAAGCTTTCTCGATCCAGCAAACACGCCACACC 8805569 37 100.0 36 ..................................... CTACTATAAATTTTAGAAGCAACGTAACGTTGCAGG 8805496 37 100.0 41 ..................................... TTCAAAGTTTCCGCTACACCAGCCAGCACATATTAGAAGTA 8805418 37 100.0 36 ..................................... TTAAGAGACCAATGACCCCTAAGCAAAAACGAGAGA 8805345 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 37 CTTGAAACGTAGCGATTCCCGGAAACGGGATTGAAAC # Left flank : AGATGTCAGGCGATGCTGCAAAGCAGCCGCTTCGCGATCGCAGAAAATTGGCTGTGGTATGCTTTTTCCTTAATTGCGATCGTTTGCCAGAACCAAGTTTGAGGAAACATATTTACAACCTCAAAGAGTTCGATTTCAATAAATTGGCTCGCAACGGAGATTGAGTTTTTGCAGCTTTATTCTTGGGTTGTACGTGCTTTGCGGTTGTGCGACCAACGAGCGCTACAATTAACATGAAGATATCTAAGCGATCGCTGGACGCCCGGATGCAGTCCGTCTATAATGTTACTAGATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTAGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTGTAGCATTTTGAGATTTGGGACTATTGACATATACTGTCAATAAGTCAGTCTGAAATGAGGTCATTTTTTCGATCTGCCAAAACGGCTCTTAGAATCCATGCTCTGTAAGGGTTTCAGATGGCGGG # Right flank : CAATACTAGTAATTACAAAGTTTAATGTCTCTAAGTTAGCGTACCAGCCAATAAGCCCCTTTTCTCGTTCATCAGTTCGGGAATTTACAAAAGCTTATCGGTGGGTTTCCGATCAATTCATAAGTCTTGCTTAACTTCCGTTAGGAATAAAGGACTGCTGGCTGTAGCTTTAAGCTCTGCTAAGGCTTTTTTAAGTGTATGATTTAATCATACATTGTGATAAGCAGGCTTTAAGCAGGAGAATCGCTTATGAGAACAACCCAAGCACTTACTATCACGTTGCCTCATGACATGCTGGAAATGGTTAGGGCTAAAGTCACCTCTGGCGAGTATGCAACAGAAAGTGAAGTTATCCGCGATGGTCTGCGGACGCTCCAGGCGCGTGACGCTGCTATGGAGAAGTGGCTGCGGGAAGAAGTCGTCAAAAGTTATGACGAATGTGAAGCTGATGAAACATTAGGTGTCCCCGCAGAACAGGTTATGGCGCGTATCCGCTCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACGTAGCGATTCCCGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //