Array 1 54719-51738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054307.1 Synechocystis sp. PCC 7338 plasmid pSyn7338-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 54718 36 100.0 36 .................................... TAGATTATATGTGCCCACTTGGTGCCAAGATTAATG 54646 36 100.0 38 .................................... AAAAAGACCACCAAACCCAAAAGGGCTTGATAGTCTTT 54572 36 100.0 37 .................................... TCGGAATTTAATGGGGAGCCGGATCATGTCCACTTAC 54499 36 100.0 42 .................................... TTAATAGCATGTTATGACTCCAAAATGAAAGTATCTAATAAG 54421 36 100.0 50 .................................... TAAAAATCGCCACGGCAAAACCGTCACCGCCAAAGCCGAATTTGACCCAG 54335 36 100.0 37 .................................... GTTTTGTTAACCAACGTTTACCGTTCCAATAGTTTTG 54262 36 100.0 37 .................................... TCAATAGAAAAACTGATTTCGCTAATTTCGGCCGCCT 54189 36 100.0 38 .................................... AGTGTAAGTGCGGGGCCACAAAAGCCATCCCCTACTCA 54115 36 100.0 35 .................................... CAGCAAGACACTTATCGTAAAGCTCGTAATTTTTA 54044 36 100.0 36 .................................... AAATAGTGTGTAATTAAGTCAACATCACACGCGCCG 53972 36 100.0 37 .................................... AAGATGGCTCGTACCATTTCAGTGCTGAAGATGATTG 53899 36 100.0 38 .................................... ATGGTTACTTTGCCGTAGAACACGGCATGGGCATAGGG 53825 36 100.0 35 .................................... GAAGCACCACAAGCAATGACGGCAGCCATTACTGC 53754 36 100.0 44 .................................... AGCTTCGTCAATTAAATCTTGTTTATCTTTTTTACCTGTCGCCA 53674 36 100.0 36 .................................... AAATAGTGTGTAATTAAGTCAACATCACACGCGCCG 53602 36 100.0 35 .................................... CCTTTGCAGGGTTCCAGGTAGATCAACCGCAACAA 53531 36 100.0 39 .................................... TAAAGACTATCAGACCATCAAAGACTCCATCAAGTTAAG 53456 36 100.0 41 .................................... AAAACTCTCTCATTTGATTGTAAATTTGGAGTGCCCAGGCG 53379 36 97.2 46 .........G.......................... ACGAAATTAAGGTTGCTCAAGAAGAAGCAATTTTGTCTGCTATGGA 53297 36 97.2 49 .........G.......................... ATTTCCATGGTTGACCGTAAACCCATCGGCATCAACCTGTATTAAATAG 53212 36 97.2 43 .........G.......................... GGTGTTCCCAATACGGAATCGGGGGGCAAAGATTCTCTGGCTG 53133 36 97.2 45 .........G.......................... ATTGGGGCCGGGGTACCGTTGGCTAGTGTGATCTTGTTGTTCTTA 53052 36 97.2 46 .........G.......................... ATGGAACTCACAGGTAATACTCCGGTTTTTTGCTGATTTGCTCTTG 52970 36 97.2 36 .........G.......................... GCTAAACGTGTAAGCGTAATGCAAGTTGAAAGATTG 52898 36 97.2 37 .........G.......................... TCTTTTGATTTTTATCAGTTTTTGCTAGCTGATTAAG 52825 36 97.2 37 .........G.......................... TCTTTTGATTTTTATCAGTTTTTGCTAGCTGATTAAG 52752 36 97.2 43 .........G.......................... GTTAATGATTTCGTCATATCATTAACGGGTGGGACGCACCACG 52673 36 97.2 37 .........G.......................... TTGGCGTTAACTGAAGAATGATTAGGCGTAATAACTA 52600 36 97.2 36 .........G.......................... TTAAAAAGTAATGCAATAACGATATCAGAAAAATGA 52528 36 97.2 45 .........G.......................... GTTATTATCGCCCCTAAACCAATGAAAACCCTTATTTATAAAGGA 52447 36 97.2 37 .........G.......................... CAAGGCAGCTAAGGCCAACCAAGAAGCTCTCCAAAAG 52374 36 97.2 41 .........G.......................... TGATAAAATCACGCGGATTAGTTTATTTTTTTGATCCCTAG 52297 36 100.0 45 .................................... GTTATTATCGCCCCTAAACCAATGAAAACCCTTATTTATAAAGGA 52216 36 97.2 37 .........G.......................... CAAGGCAGCTAAGGCCAACCAAGAAGCTCTCCAAAAG 52143 36 97.2 41 .........G.......................... TGATAAAATCACGCGGATTAGTTTATTTTTTTGATCCCTAG 52066 36 100.0 37 .................................... AAGCAGTGGGAACCAAATTGAAAATAGACATTTTAGA 51993 36 100.0 39 .................................... CTTGGTTAACAAGGCGAGAAGAAGAATTGTTCACAGTGG 51918 36 100.0 36 .................................... CTAACTCCCAAGATTCGAAGTCATACAAGTCATATC 51846 36 100.0 37 .................................... CCCTGAAAGATCCTCATCGCATTCAAAGCTGATCGCA 51773 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================================== ================== 40 36 98.8 40 CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Left flank : TTAATTCGTTAATTGATGCTTTTCTATGTCATTACCTACGATATTCCTGATGATCGCCGTCGCAAAAAAGTAGCTGATTTGTTGGAGGGCTATGGCCAAAGGGTGCAATATTCCGTTTTTGAATGTACGCTGTCTAAGTCTAAGCTCCAGGAATTACAAAACCGTCTCCGCAAAATTTACCAATCGGAGGAAGATAGTTTACGCTTTTACCCTTTATCTCGGCATACCCTAACCCAAGTGGATGTCTGGGGGGAACCGCCGTTAACTGAGGCTCCTGGATCAGTCATTGTTTAAAGTCTATGATGATCATTGATGTACTATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCATTTCTCGTTAGGAGCCTCGATAGCTCGCTGTGTAAGGCTTTCAGCTCTTATTTTCCCCTTGGAATTTCCCAATTACGGTCAATTTTTGCTGAGCCTCGCAAATGGGCATTGGATGCCCTATTCCATAAGGGTTTAAAATGGGGTCA # Right flank : CTATTACCTTCTCCGCATTTTCCCTGCTCATTTCTAGCCAAATATCAATATCTTTCGTATATTTGGGATGTTTATGAACTGCTATAACATATTCGCCAATAACTAGATATTTAACCTGATTTTCGTTTAATAATTCTATAAACTCTTTGAAGTCTTGGTTCAGCATTGTATTTGTATTGGTGATATTGTTGGCGAATTTGTTCTAACGCTTCTAATCGTTTTTCTGGTTTTTGCTGTTGCCAGTAAAAAAAAATTACTTGCTTGTTGTTGTTTAGTGGTTTTGTGAACAATTTTTTCCATATTTGCTACTCAGAACCGATTATTGTGGCTGATTTTTTAAACAATTGCCCCCCAGAAGTTCGCAATCGGGGAGGCTTGCAAACCAATTTTTGGTTACAGCGACATGGACGGCAACCGTAACAAAGTCCGTGTCCGTTTCAAATATTTTTTGGCTGTATCATACAAAAGAGCTAAATCGGAGGCAATATCCTTGAGAGATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Alternate repeat : CTCTCCATTGCTAGGAGAAACTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1038483-1039452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054306.1 Synechocystis sp. PCC 7338 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1038483 36 100.0 36 .................................... AAGGTATGCCTAGTCTGCTTAGGATTGCGGTACTCT 1038555 36 100.0 35 .................................... ATACGGCGGATATGGTGATCGCCCGTCTGCTTTTC 1038626 36 100.0 34 .................................... GAAGCCAACGACAAAAACCAATTTGACCGCTGGT 1038696 36 100.0 39 .................................... GATAGCCCAGAAAAGGAGCAAGGGACACTTGCGACAGCG 1038771 36 100.0 35 .................................... ACTGGTTCCCTCTAGCGGCCCTGGGGGCGGGGACT 1038842 36 100.0 35 .................................... ACGACTCTTCAATCCTAATAAATAATAGGATGATG 1038913 36 100.0 36 .................................... GTCAGCCGGCCCGAGCTGGCCTGCGATCCAAATGTA 1038985 36 100.0 36 .................................... GTGTTGCTGGCGTGGTTATGGTGTTTGCATTCCAAG 1039057 36 100.0 35 .................................... GCTAGTGTTTTGATTCCTAAAATGGCGACTTTTGC 1039128 36 100.0 34 .................................... AATAGCTACGATGCTCCCCGGCAAGCCGCTACAG 1039198 36 94.4 37 ...T.C.............................. CCTCAAGTAAGGCGGGGGGAAGTTCAGTAACCAAGCC 1039271 36 94.4 36 ...T.C.............................. ACTGGAGTTAGTTACAAAAAGGCCAGCGGTGCGGCC 1039343 36 94.4 38 ...T.C.............................. TAGACGCGATAGTTCTTCCCCGGTACTAATCCCCCTTG 1039417 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.8 36 GTGCCTAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTCCTAAACGCTGGCGTAAAGCTTACAAACTACTTGAGGGGTATGGCGATCGCCTACAATACTCAATTTTTCGCTGTTGGCTTAGTCAACGAATGCGTGAAAAGTTGCGCTGGGAGTTGGAAAAGATTCTGACTCTGGATGATGACCTAATTTTAATTAGGCTGTCAGCTCAATGTGTCAAGGATTTACCAAAATATAATCGCCAAAATACTTGGATACTAGAAGGGGGTGGCTTTCGGGTCATTTGACTAAGCGCAAGGATCGGTCTTTGTTTTCTCACCAACTCTGTTTAAGCAGTCCCAATGCCTTATCTGATAATCCATTGAGGTCTTTCCTCTATCAGTTAGATCCTTGTAAACGCTGTATCCCTTGTCCTGTCTAAATTGTGCAAACCTCTTCTACTCTATTTTCCTTGACTTGTCTTTTTTGAAATTTGAGTTGTTGAGCACCTTGTAAAATCCTTGTAGAAGGTACGCATGCTAATCTTTTTGAAAGTCGCC # Right flank : CGAAATTATGAATTTTCCGAATATTAACAGAGCATAGTTATGGGAATAGGAGATTTTGGAAGAAACCGATCGCCTGACAAAAACATCAAGACTGAAATGGGAAGTGTTGGAGTAAACGCACCTGGGCAATCGTCTCAAAATCGCGATCATTGTGAACCAACAGTAAATCATTCTCCAAAGCAACTTGAGCGATACAGCAATCAATTGGACTGCGAACCGTTAGCCCCTGACGACGCAAATCATAGAAAATTCGCGCTGCCTTTTGCCAGGAATCATTTGTCAGTTCCACGTAGTCCTGAATTTCAAGATAGGTGGAAAGAAGCATCCACTCTTTTTCATTCAAACTCCCCTGAAGCAGTTCAAGCTGAGTGAAACGTGCTAGAAAAACACCACGATCGCCAATTAGTGTTTCGAGTTGTTGACGGACTTGGCGTGTGCGGTCGCGGAAGACACTGATCCACACAGAAGTATCAATCAGTAGCATGACGAGTCTGGCGCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1619124-1618796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054306.1 Synechocystis sp. PCC 7338 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1619123 37 73.0 35 .CACT.....G...T.G.C....G.T........... CCCGTTAGTCTAGCGGCAAAATGGTGCGACAACAG 1619051 37 100.0 35 ..................................... GAGTTAGCCAAGATGTGGGACAAAAAACATAAAGA 1618979 37 100.0 36 ..................................... TTATGATGTTTTGGAATTGAATAATCTTAAGGCTTT 1618906 37 100.0 37 ..................................... ACCCAAGCCTTTCGTCCACACATTTTCGCAACCGAGC 1618832 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 94.6 36 CTTTCAACCCACTTCCATGCAGGAAGGAGATTGAAAC # Left flank : TCCTCGATGGCTTCTGACTCACCGGTGATCGTGGCGTTGACCCCTTCCTCCGCCAACAAAATGGTTCCCTTCAGCCCCAGGCGATCGCATAACCCCTGCCAACAGCTTTGCTTTTCCTGCAAATCATCGAGCCGGGTGAAGTGATAAAAAGTTGTTACCTGGTGAGCCATAGGAAAGCAGAAAAATCCTTGCTTGTTGTGAACTTCTATGGCTATAATAGCTGAGGTTTGTTACCAAACGACGTAGCATGCGCCAGTTCAAGGGGGTTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCGCTAATCTCCATATCTCCACATGTACAGTGACACTTTCTTTGTCATTGGTGACAAGTTGTTGTCATAGTGCCGAATTGTGTGTCGTGATGACAGATTGTTGTCGCCGAGGGATTGATGACAAATTACTGTCGTTTTAATTTTGCAAAGAAGGCGCTCCTTTCAATCCATTTTCATCA # Right flank : TCCGACCCGTCAATTCCCCTTGGAGACTTGCTTCCAGAAGGCTTTTTGGCAAACCCTGGAACGTTCAGCCAGTTTTACCAAAGAGAACAAGGTAAACCTCTGTTCACAGAAGCTAAAACTCAGACTAGGCAAGCCTTGAGAGGTTTTGGCAAACACCCTAGCAAAGTTAACCTCACTATAGGTTTGCCAAAAAAGAAAGATGGATTCCCCCATGGTCGGGGGTGATTCGATAACCACCGCTACGGTAAGTCCGTCCCCTTATGCTGGGTGTGCACCTTATGTCTCTACTACAAGAGTAGACAGCTTCTGGGTGGGTAGTTATCAGGGCCAGAAAGCACGTTTACCGACGGTAAACAAACTAACCCTCATTTAACACAGCACAGAGGCTCAAAAGAGCATGAACTGCGGCACGATTAACACTACGTTAATATTCAGTTTTCAAGGTGCTTGTCGAGATTGATAGGCAGTAAATGCCATCTCTTCCGCCATTGTAACTGTTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACTTCCATGCAGGAAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA //