Array 1 59-754 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000021.1 Siminovitchia fortis strain DE0258 NODE_21_length_54407_cov_39.724569, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 125 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 191 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 257 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 323 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 389 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 455 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 521 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 587 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 653 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 719 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.5 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : ATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 102-3106 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000070.1 Siminovitchia fortis strain DE0258 NODE_70_length_17514_cov_38.595897, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 102 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 168 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 234 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 300 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 366 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 432 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 498 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 564 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 630 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 696 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 762 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 828 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 894 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 960 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 1026 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 1092 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 1158 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 1224 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 1290 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 1356 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 1422 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 1488 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 1554 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 1620 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 1686 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 1752 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 1818 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 1884 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 1950 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 2016 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 2082 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 2148 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 2214 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 2280 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 2346 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 2412 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 2478 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 2544 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 2610 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 2676 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 2742 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 2808 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 2874 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 2940 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 3006 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 3071 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 46 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATTAG # Right flank : TACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 95-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000073.1 Siminovitchia fortis strain DE0258 NODE_73_length_14618_cov_38.900859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 95 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 161 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 226 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 292 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 360 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 425 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 492 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 559 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 627 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 694 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 761 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 827 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 893 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 960 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 1027 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 1094 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 1162 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 1229 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 1299 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 1366 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 1432 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGCCG # Right flank : AATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2575-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000089.1 Siminovitchia fortis strain DE0258 NODE_89_length_8727_cov_38.995152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2574 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 2509 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 2442 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 2375 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 2308 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 2241 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 2174 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 2106 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 2035 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 1967 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 1900 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 1832 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 1766 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 1700 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 1633 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 1567 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 1501 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 1434 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 1368 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 1303 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 1236 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 1170 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 1104 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 1036 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 969 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 901 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 834 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 768 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 700 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 634 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 569 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 503 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 437 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 304 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 237 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 171 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 105 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TTCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 104-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000150.1 Siminovitchia fortis strain DE0258 NODE_150_length_991_cov_39.348060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 170 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 236 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 302 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 368 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 434 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 500 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 566 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 632 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 698 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 764 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 830 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 896 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : ATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 104-602 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKZ01000165.1 Siminovitchia fortis strain DE0258 NODE_165_length_661_cov_40.269231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 170 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 236 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 302 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 369 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 435 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 501 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 567 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //