Array 1 194777-196329 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X136 NODE_1_length_276478_cov_56.671315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194777 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194838 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194899 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194960 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 195021 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 195082 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195143 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195204 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195265 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195326 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195387 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195448 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195509 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195570 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195631 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195692 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195753 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195814 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195875 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195936 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195997 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 196058 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196119 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196180 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196241 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196302 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212462-213101 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X136 NODE_1_length_276478_cov_56.671315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212462 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212523 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212584 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212645 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 212706 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212767 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212828 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 212889 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 212950 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 213011 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213072 29 96.6 0 A............................ | A [213098] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //