Array 1 262-605 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELZ01000181.1 Thermus scotoductus strain 24_S24 NODE_263_length_2175_cov_35.771_ID_525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 262 37 100.0 41 ..................................... TAATCCGTCTCCGGCCAGTCGGGCCGGTCCACCAGGAAGCG 340 37 100.0 40 ..................................... AAGAAGCCCAGTACCCAGTCTTCGCTGACCTGCACCCTGA 417 37 100.0 39 ..................................... CGAGTTTTCTGTTCGGCGACAAACTCCTTACCGCACCTC 493 37 97.3 39 T.................................... AGCTTCCCTTTGCACCCCAGGTCGGGTACCCTGGTCCTT 569 37 67.6 0 A....G.C.............CGGCT.A...A..C.T | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 93.0 40 CGTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CAGAACCTCGGCTACTGTCTCCCGCACCGCTTCCCTCAGCAAGATCCGCAAGGTATCCTGGTCCACGGGGCACCTCCTCGTGCTAAGGTGTGCCCCCCTATTAAACACGGACCCTTACACATAAATCCTTACACGACCCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATATGAATATTCCAGACTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACAGTGTTCTAAGGGGGGTACC # Right flank : TTTCCCTGCCTTGCCTCTCTCTTCACCCGGAGGCAGGGGTAGGGGCAATTGGGCTTCCCCACCTCCACCTGCCCCAGGATGGCTTCCACCGCCCGGTACAGCCGGGGAAGGACTTCCCTGAGAAGGTCCTGGGCTTCCCTTCCCGCCCAGCTCAGGATGTAGTCCCTGGCCCCCACCATCTCCAGGCCCAGCCTGGTGCCCACCACATAGGCCACCGCCTCGGCCTCGAGCTCCTTCACCCCACGGGGAAGCCCCCTGCCCGCTTCGTCAAAGTGCAGCAGAGCGTGCGCCCATTCGTGAAGCAGGGTGGCCGCCTTCTCTCCTGGGGGCAGGTCCCGATTCACCCGGATCACCCGCCCATCCGTGTCCCCGTGCCGCTCACCCAGGGAGGCTTCCACCACACGGAAAGGGCAGGCCTCCAACAACCTGGGGAAGAGGTCTTCCGGCCCCCTGTTCATGGGGGGTTCCGCGTGGGGCTGGCCATCGGGGTAGACCAGGGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 2248-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELZ01000133.1 Thermus scotoductus strain 24_S24 NODE_21_length_17234_cov_34.4206_ID_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2247 29 100.0 32 ............................. GAATTTGCCGCAAGTGCCACCGGCTGAGGGTC 2186 29 100.0 33 ............................. GGAGGGGGGCAAAAGCCCCCCAATCCCGACTAC 2124 29 96.6 32 ............................T AGACGCGGTGTTCCGTGGCCGGATGTCATCAA 2063 29 100.0 33 ............................. GTCAGGGACGGGGTGGTCTACGTGGCCCTTCGC 2001 29 100.0 32 ............................. AGGGCTTTACGCAAAGAGGAACCATCCGGGTA 1940 29 100.0 32 ............................. CCAGCTTCTGAGCGCACCTGAGGGGGCCATTA 1879 29 100.0 32 ............................. CCCCCGGGCGGCCCGCTCGGTAAGCCCGAACG 1818 29 100.0 31 ............................. GTGCCGTAGAGAAAGTCCCGGGGCTGGAGGG 1758 29 100.0 32 ............................. GTGCCGCATGGCGGGCGGGTAGTCGTGGGTAG 1697 29 100.0 32 ............................. GGCGGCCTCGGAGGTGACCTGCCCCTTCTCAA 1636 29 100.0 32 ............................. GCGGCTGTGCCCGCGGTCAGGTTCGCCCCGCC 1575 29 100.0 31 ............................. AGTTTAGGTAAGGGCCGGGCCACCCCATCAC 1515 29 100.0 32 ............................. GTAGCCCAGAAGGACCCCAGGGCCAGGGCCTC 1454 29 100.0 32 ............................. CAAGCGCCCTTCGGGCGGCCTTGACACGCGGG 1393 29 100.0 33 ............................. GTCTTCGCCTTTGCTCTGGGCCTCATTGCCGGG 1331 29 100.0 34 ............................. GAGGAGACGGGGGCCACCTGGCCCGAGGCGCTAC 1268 29 100.0 33 ............................. CCCCCGCCGGGGGGGGGGCTGGCGCCCCCCGCC 1206 29 96.6 31 ............................T CCTACATGCTGGTACACCGGGGGCTTCGGGC 1146 29 100.0 32 ............................. AACGGCATCACGATGGGACAAGCGACGGCGAA 1085 29 100.0 32 ............................. TCAGGAGCCTTTTCGCTGAGCTTTCCCGCCGC 1024 29 100.0 32 ............................. ATGCCCACATAGCCGACCAGGCGATAAAATCT 963 29 100.0 33 ............................. CAAAAACCCACTCTCTTAGTGATTAGGACATAC 901 29 100.0 32 ............................. GACTGGCGGTTTTACATCAACGATGAAGGGCT 840 29 100.0 32 ............................. GACACCTTCATGGTACCCGCCCCCCTTCGGGT 779 29 100.0 32 ............................. GGGCGGTCCAGCATACTAGCCGCTGGGGCACC 718 29 100.0 32 ............................. GAACTGAGGCGGCTGATATCGGTGCCGTCCGC 657 29 100.0 32 ............................. GACACCTTCATGGTACCCGCCCCCCTTCGGGT 596 29 100.0 32 ............................. GGGCGGTCCAGCATACTAGCCGCTGGGGCACC 535 29 100.0 32 ............................. GAACTGAGGCGGCTGATATCGGTGCCGTCCGC 474 29 100.0 31 ............................. GTGGGGGACAATAGCCCGGGCCAAGGGCAGC 414 29 100.0 32 ............................. TACCTCCTCTCCCAGCCCGACTACCGGCTGGA 353 29 100.0 32 ............................. GATGGGCAGGTTGAGGGCCCTGGCAAGGTTGG 292 29 100.0 31 ............................. GCGGCGCTTGAGGCGGAGCGGGAGCGGATCC 232 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 171 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================== ================== 35 29 99.3 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGATACCCTTTCTTGTTGTATTCTTCGTCCATGACCGTGGCCGACCACCTGACCCTGAACGAGCTGTGGCGGAGGGTCAAGAAGGCCAAGGACCCGATAGAGAAGCATCGCTTCCTGGCCGTCTACCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12396-12974 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELZ01000133.1 Thermus scotoductus strain 24_S24 NODE_21_length_17234_cov_34.4206_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12396 29 100.0 32 ............................. CGGTGGTGGGGCTCTTCCGCAACATCGGCCAG 12457 29 100.0 32 ............................. CCTAAACAACCACGCTTCATAAGACCCCTCGT 12518 29 100.0 32 ............................. GCTGACTGGACGCTGGACGCGGTTATCCGCAA 12579 29 100.0 32 ............................. GCCATGGAGGACCTGGCGGGGACCACGAAAAA 12640 29 100.0 32 ............................. AGGAAGCCCCACCCCGGTGGGGTGGGGTTTGT 12701 29 100.0 32 ............................. CAAAGGCGAGCGCAGCTTGGGCTAACGCAAAA 12762 29 100.0 32 ............................. GCCCTCGCCGCGTCGCCATCGCCCTCCCCGCT 12823 29 100.0 32 ............................. GAGGCGGTTGAGCTAGTGCCCGCCCCTGCACG 12884 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 12946 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCCAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAGGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTTGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1363-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELZ01000003.1 Thermus scotoductus strain 24_S24 NODE_102_length_7653_cov_25.0186_ID_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1362 29 96.6 32 ............................T ACGCCCGGAACCCCATCTGCCGAAGGGCCTCG 1301 29 100.0 32 ............................. ATCCAGGCTGCCGTGGCGAGCGGGAAGGGGCG 1240 29 100.0 32 ............................. TCCACCCAGGCCGGTGTACCCGGCTCGGGCAT 1179 29 100.0 32 ............................. TTTCGGGCGCGCTCATATCTACCTCCTAAACA 1118 29 100.0 32 ............................. ACGTTTGGGCCAAGGCCATCCCCACCGCTACC 1057 29 100.0 32 ............................. CTCACCTCCCCGAACGGCGGCGCGTAGTCCCG 996 29 100.0 32 ............................. AGGGGCGTCTCCCTAAGGAGTTGGAGGCTAAC 935 29 100.0 32 ............................. CCGCGGCTAAAGCCCGCCAGGCCCAGGCCATC 874 29 100.0 32 ............................. CTCGCGACCATGCCCCACAGAAAAGCACGGGA 813 29 100.0 33 ............................. GTCCGGGTGAACGAGGCGATGTTGGAGACCCTC 751 29 100.0 31 ............................. AGGTCGTGGAACCAGTTGAGCCCCTTCGGGG 691 29 100.0 32 ............................. GCGTGGTGCTCGTCAGAGATGAGGGCTTCCAC 630 29 100.0 32 ............................. GGGCCTCTGAGTCGGTCCTCCCCCTGCTCTCG 569 29 100.0 32 ............................. TTGGGCTCCCGGGTAAACGCCTAGCTTACTCC 508 29 100.0 33 ............................. CGGGCCAAAGAGGTCTTCGGCTCCGGTCCCCTC 446 29 100.0 32 ............................. AGGGCGATCTCCCGCAGGGTGCGCACCCCTAG 385 29 100.0 32 ............................. GCGCAGGACGCGCCCGTCCTGGAGGAGGAGGC 324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GAGGAAGGTCCCCTTGGTCGTCTCCACGCGACCAAAGGGGAAGATGCGAAATTCGCGGGGGGGCTCGCCCCCCGGCACGGGAACGGTCAAGGCGTGTCGGGTCATGGTCCACAAAGAACCCCCGGGGGTTCCGGGGGTAGAGTTATCCGAGCTTAGCTCTAGGATAGCACCAGGGCTTTACCCAAAACTCCTTCCTCGCCCTCCCTTAGCCTGCTTCAAGAGTTCTTGGGTGACTTCATAGTTGAGCAGGCGAACCAGGCCCCTCAGGAGCAGGTACGGACCATCCCTCTCGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7018-5616 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELZ01000008.1 Thermus scotoductus strain 24_S24 NODE_107_length_7528_cov_49.3181_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 7017 36 100.0 40 .................................... GCCTGGTGGGTGCCCAGGTGAGCCGGCTCGAGTTTACCCA 6941 36 100.0 42 .................................... GCCTCCATGGTTACCCTCAGGTCCTTGATTCCTAACTTATAG 6863 36 100.0 42 .................................... CAGGGCGTCATACGCATCGGGAGCGGTTTCCACCGCCACCCG 6785 36 100.0 45 .................................... TACAAACGGCTTGCTGCCTCGGGTGGCCACGCCGCAAGCGTACTC 6704 36 100.0 44 .................................... AAATAGGCTTAGGGGACAACCTCTCCAAAGCCCAGGGGGCTACA 6624 36 100.0 40 .................................... TCCACAGCTTGCTCCACCTTTTGCTCCACCCTTGCCTTAA 6548 36 100.0 41 .................................... TTCAGAACCTCGAACAAAACCAGCGTGCTGAACATTCTCCT 6471 36 100.0 41 .................................... CGTGGACGCATACAGGTGCACCTGTGCGCAAGCGTCCTTAT 6394 36 100.0 37 .................................... CTCTTCAGCCTCCCAGTCCCCTGCGTCGCGGACAACA 6321 36 100.0 41 .................................... GTATTGCCTATGCGCCTCGCGCATGTCGGCCACCGAAATGG 6244 36 100.0 37 .................................... CTGAGGCCCGCCTCGGGCACGAGTGGTTTCCCGCCTT 6171 36 100.0 38 .................................... TTTTCCCTTCTATACCTCCTCATGCGCCACCTCCCATA 6097 36 100.0 38 .................................... AGGGACGGGGAAACGAAGACCACCTTGTTGCGTGGTGG 6023 36 100.0 40 .................................... TATCCTTCGCACATCCCCACATAGCGGATAGACCCGGTGT 5947 36 100.0 38 .................................... CCCATATATCCGGTCGAGGAACAAGGCAGGGACCCATT 5873 36 100.0 38 .................................... TCGTGGCTGAGGGAGGCTTTTGCGGAGCTAGTGGTCGG 5799 36 100.0 39 .................................... CCCTCCAAAAGGCGGTCAACAATAGCTTCCAGCCTAGCC 5724 36 97.2 37 ........G........................... CCTAGTCCTTGCCCTAGGCGGGTCGCACGGTTGAGGA 5651 36 97.2 0 ................................G... | ========== ====== ====== ====== ==================================== ============================================= ================== 19 36 99.7 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGGTAATACCGAGATTCCCGATCCCTAGGGACCTTCAGGTCCACCTGGCCAAAGGTGGTCTCCAGCTTGCGGGGGTAGTAGCCGTTCCTGCGGCCTCCGTGCACCTGCAAGAAGGCTGTCCGGTCCAGCTCCAGAACCGTCTGCAGAACCTCGGCTACTGTCTCCCGCACCGCTTCCCTCAGCAAGATCCGCAAGGTATCCTGGTCCACGGGGCACCTCCTCGTGCTAAGGTGTGCCCCCCTATTAAACACGGACCCTTACACATAAATCCTTACACGACCGTCCGGGAAGCCGGACGGGGATCTTGAAAGCCAGTTTTCCTCTTACGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTCCTAAAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATATGAATACTCCAGACTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACTGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCTGGGTTTGGCAATATGGGCGGGTCCCGGCCACCAACATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGCCTGGTCATCCGCACGGCCCAGGGCGGATCCGTGGATTACGTCCTGTTCCCCGCCCTGGGGGAGGCCAGGGGCTGGGCCAGGAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCGGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGGCGTGCGCGTCCTTTTCCGCTATGCGGAGCATCTGAAGGAGCTCATGGGCCCGGATGCCTCCTCCGACGAACCTGCCTTCCAAGCCAGGGTTGCTTTGCCCTTTGGGCAAACAGATTTGCGTAAGCAAGAGGCTGCTCCCTAGCCTTCGAGGCGAGTACCCTTCTTAGCTACAAACCGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //