Array 1 141543-142486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYC01000025.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141543 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 141604 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 141665 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 141726 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 141787 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 141848 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 141909 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 141970 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 142031 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 142092 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 142153 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 142214 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 142275 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 142336 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 142397 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 142458 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : CGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27045-26896 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYC01000043.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27044 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 26984 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 26923 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38206-37200 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYC01000030.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38205 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 38144 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 38083 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 38022 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 37961 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 37900 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 37839 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 37778 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 37717 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 37656 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 37595 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 37534 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 37473 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 37412 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 37350 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 37289 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 37228 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7684-5947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYC01000077.1 Cronobacter sakazakii strain MOD1-comp53b csakComp53b_contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7683 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 7622 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 7561 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 7500 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 7439 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 7378 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 7317 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 7256 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 7195 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 7134 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 7073 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 7012 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 6951 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 6890 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 6829 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 6768 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 6707 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 6646 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 6585 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 6524 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 6463 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 6402 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 6341 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 6280 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 6219 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 6158 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 6097 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 6036 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 5975 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGAGCGGGGATAAACCGCGCCTGCGGGCTGTGTCATTACTGGCGTGAA # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //