Array 1 557820-555619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFG010000002.1 Bifidobacterium pseudocatenulatum strain YIT11025 YIT11025_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 557819 36 100.0 35 .................................... ACTTCCTGCACGACGTCGTCGTGGCGGATCCAGCA 557748 36 100.0 36 .................................... GCCTCGACATGGGACAAGGACCTGTACGATGACGTG 557676 36 100.0 35 .................................... GAGAGGAAGGCGTGGCACCAAGCTGCGTGAGCACA 557605 36 100.0 38 .................................... CTCGACCTACCCGAAGGACTCGACACGGGCAAATGCAC 557531 36 100.0 37 .................................... ACGTCAGCAAACGCACGCTAATCCGGTGGCGGCAGTC 557458 36 100.0 33 .................................... TTCACCGGCCAGCAGCCGCAGACGCGGAAATAG 557389 36 100.0 37 .................................... CCGAGTATCATGCGCGACTCTGCCATGCCGGTAGGCC 557316 36 100.0 38 .................................... TATCGGACGGCTGGGCTTGCGATGCTTTTTCGGAAAAA 557242 36 100.0 36 .................................... TTTACCTAATCTATAGCCGGTGGTGAGTCGCCGTAT 557170 36 100.0 37 .................................... ATGTCAGCATAAGCACAGTCCTTGCAAGTCCACGAAT 557097 36 100.0 37 .................................... AAGCCACGTAGCGGCCCCAGATGTAGCCGTCCGCGAC 557024 36 100.0 37 .................................... CGGTTGTCGGCGCTTGGTTTGGCGGCTGGAAGACGGG 556951 36 100.0 36 .................................... TTGTTGTGGACTTGGCCGTTGGCGTCGGGGATGACG 556879 36 100.0 35 .................................... ATTGACATGACCGACGAGCACAAGTATCTGCTTGG 556808 36 100.0 40 .................................... GCCGACTATGCCATACGTAACAAATTTCGCGATGAATCGG 556732 36 100.0 37 .................................... GTGACCTTGCAATCCAATATGCTTTTCGCACGAAAAA 556659 36 100.0 37 .................................... CATTACGCGATGGGGCATGACGCTAACGCGGAAGCTG 556586 36 100.0 35 .................................... TTTTACCCAATGGATTGACCAGACCAAAAACCGTT 556515 36 100.0 36 .................................... GTAGCACTCGCGCCAGCCGACAAATCAGCATGGTAC 556443 36 100.0 35 .................................... ACGGACGATACGCCAATGGACTTGCGAGATGGCTA 556372 36 100.0 34 .................................... GCGTAGATCCTTGCGGCCACGGCCTCGTACTGTT 556302 36 100.0 37 .................................... CGTCCACGCGACATGTAGGATGGCCATTCGTTATCCC 556229 36 100.0 35 .................................... TTATATCGTGACGCTTGCGCGAAAGGTACCGGCAA 556158 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 556085 36 100.0 34 .................................... GGAGGATCATGCGGGCTTGGCCGATCAGGTCGTT 556015 36 100.0 36 .................................... AGAGCGGTAATGCGAGGTGTTGTGTTGTATTGTATT 555943 36 100.0 35 .................................... GCGCTCTACGTGGTCGGCACGGTGGAATCCGGCTT 555872 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG A [555861] 555799 36 100.0 37 .................................... GGGGACAATGACCCCGCTGATTTGAGGGACGGGTATA 555726 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 555654 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================== ================== 31 36 99.8 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 220996-221224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFG010000001.1 Bifidobacterium pseudocatenulatum strain YIT11025 YIT11025_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 220996 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 221047 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 221098 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCCACGGA 221149 24 100.0 27 ........................ CTTAGGTGCTTATTTGAGCCGCTTGTG 221200 24 83.3 0 C...........CA.......G.. | C [221223] ========== ====== ====== ====== ======================== =========================== ================== 5 24 94.2 27 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGTCGGGTCGGGCTGGTTGTCGAAAGCGTGCTGACGGGCGTCGATTTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGTATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATCGGCGTGGCGATGTTCTCTTCCTTACCGTTGATGATCATTGTGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGTCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCCCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGCATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATTTGCCG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //