Array 1 64064-62815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAH01000001.1 Escherichia coli strain MOD1-EC5864 MOD1-EC5864_1_length_646869_cov_26.7819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64063 29 100.0 32 ............................. TGAAGGCTAACACGCTAACGATGAATTTTAGC 64002 29 96.6 32 A............................ CGGCGGCTGATAAAGCAGCACAGCAGGCGAAC 63941 29 100.0 32 ............................. CTGGCATAATATAACCCTCAGCCACCCTTTGG 63880 29 100.0 32 ............................. CGGCGGGCGTGCGGGTGAGCGCGGTTTTGGTC 63819 29 100.0 32 ............................. CCATCATCGAGTCAATTTGCGTTTTTGTGTAG 63758 29 100.0 32 ............................. AATATTAAAACTCAGCGGAGTGCATGGCGATC 63697 29 100.0 32 ............................. CGCGCATGCTGATATTGTTATCGAGGCGATAT 63636 29 100.0 32 ............................. CCGTTTACGCCGCCTGAACACAATAAAAGACG 63575 29 100.0 32 ............................. GAAAAGGCGGCGACGAAATGGCGGGCATGTCT 63514 29 100.0 32 ............................. GGCCGTTTATCAACTTGATGAAGTCTATCCAA 63453 29 100.0 32 ............................. CCTTCACGTAAAATAATTTTTTCTTTTATTTT 63392 29 100.0 32 ............................. GAAGATGGCTAAAGAATTTAAGACACTAGCCC 63331 29 100.0 32 ............................. GGAATAGTTAATTTCGGTGATGGCTGCGTAAA 63270 29 96.6 32 ............G................ AGTAATGCTGCGTTGAGATGACCAGGCGGGCT 63209 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGCCACGGGCTT 63148 29 100.0 32 ............................. TAGCCAGACGTACTCGCAATCTGTCGGCGGTC 63087 29 96.6 32 ............................A CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT 63026 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 62965 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 62904 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 62843 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTCAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGTGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90126-89609 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAH01000001.1 Escherichia coli strain MOD1-EC5864 MOD1-EC5864_1_length_646869_cov_26.7819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90125 29 100.0 32 ............................. CGCCAGTATTGCCAGAATCACCATGATCAGAC 90064 29 100.0 32 ............................. GTTGGCCCCCGCAAAATCATTGTGGCAAACAG 90003 29 100.0 32 ............................. GCCTCACCGCTCACGCCCACGTTAAACGTTAT 89942 29 100.0 32 ............................. GCTCGCGCCAGTGCGTCGCCTTTCTGGCCTTC 89881 29 100.0 32 ............................. GGAACCCGATAAATTTAAAAACGGCGCACGGG 89820 29 96.6 32 ..........................A.. CCGATGACCGACGAGCCTGATTCGTAGTTTCG 89759 29 100.0 32 ............................. GTTTCTGGCATCGGAAAACATTGCATATCGTC 89698 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 89637 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAGCTTGTAAAGAATTCCACTCATTTGTATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATTGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATATTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATGCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //