Array 1 214263-215356 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJGRK010000003.1 Streptococcus agalactiae strain 189 Scaffold3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    214263	    36	  94.4	    30	A......T............................	ATCTGGAAGCGGTCAAGAAAGCCCAGTATG	AC [214268]
    214331	    36	 100.0	    30	....................................	ATGGTCAGAAATCGAAGAAAACGAAGTCGT	
    214397	    36	 100.0	    30	....................................	AACTAAACAAACGCATTGTGTTTTTAGCTT	
    214463	    36	 100.0	    30	....................................	TTGAACGGTCCAAGATTTTTCATCACTTGT	
    214529	    36	 100.0	    30	....................................	CTTAAGCTTGATTATAGTATATCACCATTT	
    214595	    36	 100.0	    30	....................................	AAGACTTAAAATCGATTAGAATTGATTTTA	
    214661	    36	 100.0	    30	....................................	CCAGTTTAGAAACAGAACAAAACTAACGAA	
    214727	    36	 100.0	    30	....................................	AGACAAAGAAGATGGCAAGTCTATCAACAA	
    214793	    36	 100.0	    30	....................................	AGTAGAAACATAACGATAATTCCATGAATA	
    214859	    36	 100.0	    30	....................................	ATGTTGTAGAATCATATCGACCATATAACC	
    214925	    36	 100.0	    30	....................................	ACAAGAAACAAACAGCCTTGATGACTTAAT	
    214991	    36	 100.0	    30	....................................	GGGTCCAAATCAGCAATCTATGCTAAAAAT	
    215057	    36	 100.0	    30	....................................	CAACCCTATGTTTGATAATATTTTAGACGT	
    215123	    36	 100.0	    30	....................................	AAGTGAAGTTGAATTTTATTTGAGATACTA	
    215189	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
    215255	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
    215321	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.7	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   TATACTAACTTTTCCAGTTATTTATTTTTTAAGACGTGGATGGAAGCAAAAAAGTATCTTTCTATATGAAGGCTTTTTCAAGATAGCTATTATGTTGCCTATTTTTATTGTAGTATGTGCCTTTCTGTTGGGTTTTGACCAGTTTTTCACTCTATTTCATGAGGTGCTTTTTCCAGGAGATTCTACTTGGCAATTTAATCCTCTAACGGATCCAGTAATTTGGATACTTCCTGAAACTTTTTTCCTCCATTGTTTCATCATTTTTTTGTTAATCTATGAAACAATAACTATAATTCTTTTGATAATAGGTAGAAAACATTTAAAATTAAGAAAATATAAAAACAAAATGCAAGCCTTATAATAGCGCTTGCATTTTGTTTGCTATTTTTTTATAATACAAATATGAGAAATGTCGGAATTATAACAATGACATAAAAAAGCACCGAATCGGTGCTCACTTTTTCAAGCTGAATACGGACTGGATTAAAAATCACTGCCTT
# Right flank :  CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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