Array 1 1701-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000068.1 Methylocaldum sp. SAD2 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1700 29 100.0 32 ............................. GACGACGCCGCGGCTAGCGGGCAAATGTTTTA 1639 29 100.0 32 ............................. AAAACCTTCCGACGCAAAGATACGAAAACGGT 1578 29 100.0 32 ............................. ATGGGACGAGTACAGCACGTTTCGGCGCGCTG 1517 29 100.0 32 ............................. AAAATTAAACACATTACTTGCTGGATAAATGG 1456 29 100.0 32 ............................. AATTCGCTAGATGAATAGCTAACCATTTCCAC 1395 29 100.0 32 ............................. CTCCGGCAGCCAATACAGGAGGTCACGCCGGA 1334 29 100.0 32 ............................. CAGGATACGGCGAATACGATTGCTCGAAAATT 1273 29 100.0 32 ............................. GATTTCACTGTCTGGTATATTCATGAAATATC 1212 29 100.0 32 ............................. CCGAGTCAGGAAATCGACGAACAGCACATCCA 1151 29 100.0 32 ............................. CGCTGCAACAGTACGGTCAGAACTTCGCCTCC 1090 29 96.6 32 ............................A TACCCGCCAGTATCAATAGCCTGCTCAGTGGC 1029 29 100.0 32 ............................. ACTTTCCTTTCCCGCCTTCACCTTTTTTATCC 968 29 100.0 33 ............................. GCAAGGTGCCGTAGGCATGTCGTCCGTTTCGGG 906 29 100.0 32 ............................. CCCGTTTACGCCCGGCTTTATCCACGCGGCCA 845 29 100.0 32 ............................. AACTTTTGTCAGAGGTAATTCGTGACGGATTG 784 29 100.0 32 ............................. GCGCTGATGACGACACTCATGCCACCCTCCGT 723 29 100.0 32 ............................. CCACTGAGCAGGCTATTGATACCCATTATTCC 662 29 100.0 32 ............................. ACCAGGCTGATAATCAAACAGTTGAATTGTTC 601 29 100.0 32 ............................. CTGGCCTTGTTCGGGTCGAATCCTTCGTAATC 540 29 100.0 32 ............................. CAGCGCCGAACGGTCGCCAGACGGGCGATAAG 479 29 100.0 32 ............................. ACGCTGCTGTCGGTCCGCGCCGAGCAGGGCTT 418 29 100.0 32 ............................. ATCAAGCGATCGAGCAAGTATTCCGCTCAGAA 357 29 100.0 32 ............................. ATGCCCTCGACCAGATACACCTCGTCGCCGAC 296 29 100.0 32 ............................. CAGCTCGACTGAGGCGAACGTATCGCTATCGG 235 29 100.0 32 ............................. GGGCTTCGAAGGGGCTTGTTTTAGAGCTATGA 174 29 100.0 32 ............................. AAATTTCGAACATCCTTGCCTTGATATCCGCC 113 29 100.0 32 ............................. CCTGGATGTTCCAGGGCACAATCAATCAATTA 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 CTGTTCCCCACATACGTGGGGATGAACCG # Left flank : GCCATCGAAGACGTGCTCGCCGCGGGCGGCCTGGAACCGCCGGAAACCCCGGAAGACGCCGTCGGCCCCGCCATCCCCAACCCCAAGAGTCTCGGCGATGCTGGTCATCGTGGTTGAAAACGTTCCGCCCCGGCTGCGCGGCCGTTTGGGCGTGTGGCTGGTGGAAGTGCGCGCCGGCGTCTACGTCGGCGATTTGTCGAAGCGCGTGCGCGAGATGCTCTGGGCGCAAGTCGAAGCCGGCCTCGGAGACGGCAACGCCGTGATGGTATGGTCCACCAATACGGAATCGGGCTTCGACTTCGTAACCCTCGGCAAGAACCGGCGCATGCCGGTCGAACTGGACGGCCTGAAACTGGTGTCCTTCTATCCTCCCGAACCGGCCAACGGAGAGGGAAATAATGCTCTTTAACAACCCGGATTTTTCATTTTCAAAGCGGCGAATCGCCGGTAGAATTTCGACCGGCGATTTTTGCCAATTCTAACAACGAGTTAGAAATGGT # Right flank : GAGCTATCAAAAGACATGAGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACATACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61435-57233 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000069.1 Methylocaldum sp. SAD2 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 61434 37 100.0 34 ..................................... ACATGAAAGCTTTACCGACTCTCCGCGAACTCAC 61363 37 100.0 35 ..................................... CTCCCGAGTCATCGTCAGCATGCAAATCTCCCTTG 61291 37 100.0 34 ..................................... TATTTGCTTCCAGTCGTAGAACAGCCCGACCAAC 61220 37 100.0 36 ..................................... ACGTTCTCGGCCCCATTAACCAAAGGCGCTGGGCTG 61147 37 100.0 35 ..................................... GGCTGATGAGGTTGGTGTATCGCTGGACAAAATAC 61075 37 100.0 37 ..................................... TAAAGTTTCGTCAGTCATGGGTTTCCAGCTATGGGAA 61001 37 100.0 34 ..................................... ATTGGTAATTCAGTCAAAAAAAGCCCGGCACCAG 60930 37 100.0 36 ..................................... TTAGATCGAGGTATAGCTAGCGCAAAAGCAGAAATT 60857 37 100.0 35 ..................................... GTCCTGTCCGTTGCGCGAGATGCCGACAGCACGAA 60785 37 100.0 34 ..................................... ATGTTGCTCATGGTTCTGTCTCTATGAAGAAAGA 60714 37 100.0 35 ..................................... TCGACAATGCCAGCCGCCAACCGCTCTACCTCGGC 60642 37 100.0 36 ..................................... TGCGAGCGGCTGATCCGTTCATCGGTGCCTTGCAAT 60569 37 100.0 34 ..................................... CAGAAGGAGGGTCAGGTATTCTCCGCGATCACCG 60498 37 100.0 34 ..................................... GTTTGCCATGGGTTCTCCTTCTGGCTGGTTGATA 60427 37 100.0 34 ..................................... AATTACACAAAGTTCAACTTCCGCGCCCTACTCC 60356 37 100.0 35 ..................................... ACGTGGATCGAGACAAATACGCCAGCGGCTGGTTC 60284 37 100.0 35 ..................................... CATTTATCATCGCCTCGTATATACTGTTCTCGTCC 60212 37 100.0 35 ..................................... AATAGCCGCCATAGCCCCACCAGACGCCAGCGTAG 60140 37 100.0 35 ..................................... ACTTCACGGATCGTCTCGGGGCTTTGCATGGTAAC 60068 37 100.0 34 ..................................... CCGGCTCTGGAGGCTGGCTGACCGCGGCCATCAC 59997 37 100.0 35 ..................................... ATGAACAAGCGGCTGCGGCAGGCCTATGAGCAATC 59925 37 100.0 35 ..................................... TCGGTTGCGTTCCGGCTGGATGAAGGAGGCCAACT 59853 37 100.0 34 ..................................... ACCTTGCGGCCGGTGGCCGTTTCGATCCTGGCCG 59782 37 100.0 35 ..................................... ACAGCGTGCATTGCTGGCTTGTGTGAATTTGATTG 59710 37 100.0 34 ..................................... CATTTGCACGTTCTCAGGCTGCGCGTTCACACCC 59639 37 100.0 36 ..................................... AAGAATGACCGGGTTCAGCGCCCGGCTGATGTCTTT 59566 37 100.0 35 ..................................... GTGTTATTCGGATTGAGTCCGCTGATTTCGAAATC 59494 37 100.0 33 ..................................... ATTCGTCGGCTGCAGTACTGCGAACAGCTACAA 59424 37 100.0 34 ..................................... TTTAGGGGAATCCGAGTCCGACGCAGTCGCCCGG 59353 37 100.0 36 ..................................... TTCAGAAAATCGGTTAGGCAACACTGGTGATCAGGT 59280 37 100.0 36 ..................................... AGCTGTTACGCCCGTATTGGGCTCGATCCGGAATAA 59207 37 100.0 34 ..................................... AACAAACAGTGGAGTTTCGAGGAAATATGACCGA 59136 37 100.0 35 ..................................... TATAAAAAGTTCGTTCATCGTCTTATCTCCTGTTC 59064 37 100.0 34 ..................................... ACGCCCGCGATAACCAGCGCCTCGAAAATGCGCG 58993 37 100.0 36 ..................................... TATTGGCCATCGCGATCCTGAGCGCGGCCCATAGTC 58920 37 100.0 33 ..................................... TGGTAATCCACGAGTTGCAAATGCACGGACTCG 58850 37 100.0 36 ..................................... TTGCAGAATCTCGGGGTAGAGATTGACGAAACGCAG 58777 37 100.0 35 ..................................... TTTCCATAAATAGTATATCGGCCGCTTACCGGACC 58705 37 100.0 36 ..................................... ATCGTGACCGCACGGAAAGACTGATGAGACCGCATT 58632 37 100.0 35 ..................................... AAATCTGACCGCAGGCAACACTTACCGCATTGTGG 58560 37 100.0 35 ..................................... TTGATCCACGCGATATATGGAAAGAAACGGGTTGG 58488 37 100.0 35 ..................................... GTATCAATCGCCGCCATAGCCCCGCCCGACGCCAG 58416 37 100.0 33 ..................................... CGGGCAGGCCGGTAACGAATGGAATTCCCGACA 58346 37 100.0 34 ..................................... CCTGGAGGCGTTGCCGGATCGAACCAACCCGGCA 58275 37 100.0 35 ..................................... ATAATGCGGGGCGCGCCAGCGGGCGCGTCTCTGCG 58203 37 100.0 34 ..................................... AGACGGATGAGGTTTTATCTGATAATGTTTTCCT 58132 37 100.0 35 ..................................... CTGTGGGCTTTTTCCATCCCGGCAATTTAGAGTAT 58060 37 100.0 35 ..................................... ACTTGCGCATCGTCGGAATGGATAGATTTTCCGAA 57988 37 100.0 35 ..................................... GACTACGACGGAACGCAGCGAGTAAATGTTACCGG 57916 37 100.0 34 ..................................... ATCATATATTTGGCAAAACTTCTCTAACGATACC 57845 37 100.0 35 ..................................... CCACTAAAGTCAATCGCTCTTAAACAGAACTCACC 57773 37 100.0 35 ..................................... CGTCGAGAAATCAGTTTAAAAAGTACCGAGTTAAT 57701 37 100.0 35 ..................................... AAGTTGATCGAGACCATTAAAGCCACCCTATGTTG 57629 37 100.0 35 ..................................... ACTTGACCTAGTTGCAAAACTTTTGATGAATAATT 57557 37 97.3 36 .................................G... GAAAAGCATCGACTATTTGCCCCTCAGTTCCGGTAA 57484 37 100.0 36 ..................................... CAGTTAGCCGCTACATCGATGCAATATCAAGCGGCG 57411 37 100.0 34 ..................................... TCAAGTCTCAGCGTTTAAAAATCCGCGTTTCCAT 57340 37 100.0 34 ..................................... AGGATGCTCGCGACGAGCACTCCACGCCCACCGA 57269 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 59 37 100.0 35 GTATCTCCCGGCTTAATAGCCGGGAGTGGATTGAAAC # Left flank : CTGAACCGCTGAGGTAAACATGTTGCTTCTGGTCAGTTACGACGTCTCGACCGAAACCTCGGAAGGCCGCCGACGGCTCCGGCGAGTCGCCAAGGTCTGCCTCAACTACGGTCAGCGTGTGCAAAAATCGGTGTTCGAGTGCAAGGTCGAGCCGATGCAACTGGAAATCTTGAAGAACGACCTGCTGGACATCATCAATGAAGAGGAAGACAGCTTGCGGATTTACCGCATCGTAGAGCCGCTTGAAAAAAACGTCATGGAATTCGGCAAGTTCAAGGCGGTCGACTTTACGGATACCTTGATCGTATGAGTGCTCTGCCGATGCGCGAACTGGAAGCAATGGCAAAATGCCGGGACATTCGCGCAGACCATAAACTTATGACTTTATTCCCTTTCGTTGCCAAGAATTCAAAATTTCTTCCGGCTTTGACACTCCCGGTCCTCCCGTTCGCGCTTTCCTGCCGTTTTTTCCTGATTTATTCTTGCTTTGCCGAAAGGCT # Right flank : TTCACCAGGGAAATACCAACATCCCAGTCGAGACCGTTAAGGAAGCTCTGATCAAGTCCTTCGACAGGCTCAGGACGAACGGTAATGTATTGATTCCGTTCGTGGTGAGCCCTTCGACTCGGCTCAGGACAGGCTTGTCGAACGCTCTCCTGAGCCTGTCGAAGGGGCATGAACGGAATCCACTTGTTCAGAGCTTCCTTAAGACGTGAGGCGCGGTGCGAGCAAGATGGGGAGGTAGCGCACCAGAAACAGCAGATAGGCCGCGACCCAGAACCCTATCGCGGCTAACATGGGTAGACCATCCGGTTGCGCGAAAAGCCGGAAAACGGTTCCGAGGGTCATCATTGCGAAAGCGGCGGTCATCGAAGGAAAGGCTCGCAATGGCCGTCCGGTGTGGCCGAGCGCGACTCGAGCCGCGACACCCAGAATCATCGTGCCGATAGCCCCGTAGCCGAGCGCATGCAGACCGCTATCCCAAAGTCCCGGATGATCGAACAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTTAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-15.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 361433-360628 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000069.1 Methylocaldum sp. SAD2 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 361432 36 100.0 33 .................................... GTGTTTTGCAGCTTGCGCTTGCTGTCATCGCTT 361363 36 100.0 35 .................................... TCAGGACCGTTGACCATTTCAGCGTTGAGAATGGC 361292 36 100.0 34 .................................... GCCCGATTCACCCGGCGTTGAGCGTCCGAACGGT 361222 36 100.0 35 .................................... GGGGTTTACGGCGTCGGGTAATCCGCATCGGTGAT 361151 36 100.0 35 .................................... CCGTTTTCGGTGAGGTAGTCATATACCTCACCGAT 361080 36 100.0 33 .................................... GTAATCAGCGTCGGTAACTTCTATGATGTCTAA 361011 36 100.0 32 .................................... GTCAGTCATGATTGTCTCCAGTTTTAAGTACA 360943 36 100.0 36 .................................... AGACGACGAAATAACGATTTGATTAGTGGCCATAAG 360871 36 100.0 34 .................................... TCTTGATCATACTCTGTTTCTCTTTTCGTTAGAT 360801 36 100.0 34 .................................... ATCCTTGGCCACCCCAGCGGTATCCGCGCTAAGC 360731 36 100.0 32 .................................... TTCCTGCTAGCGCTTGCGTTGGACATCCCTAA 360663 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 100.0 34 GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Left flank : TGGCTGGAACAGTACGCGTACAGTCTGGTCCAGAGCCTGAAAAGCGAACTCAAAGCGATACAGGACATCGGCCGAGGGCTGGAAGTCGAGCGGCAAAACGGCGCCGAGCGGATTCGCAATGAACTGGACGTTGCCTTTCTCGCGGAAAACCGGCTGTACATCGTCGAGTGCAAAACCCGCCAGTTCAGGGACGATATCGAGACCGGCGGTGCGGGCGCCGATGCAATCTATCGGCTCGACGCGCTTTCCAACCTCCTGGGCGGTCTCCAGGCAAAGGCCATGCTGGTCAGTTATCAGCCCCTGTCCACCGCCATTCAAGATCGCGCCCGCGCCTATGGGATACTGACCTGCGCCGGACCGGAATTGAAAACCTTGAAGGAAACCTTACGCCGATGGATAGGTTGAACCGCCCGGTACCGAATGCTAACTTTTCGGCAAGCCGATTTTTCTGCAACCCCCTTTGTAAACCATTGACTTTGGAGGTGTTTTAGACACGAGCC # Right flank : TTTTGTCGGTTCCGGGACCGGGAAGCTCGGCATGAACGGCTAGGTTCGCGACAGATGCGCTTCCCTTCGGTCAGCACATCCTACAAACGGATGGGCCGGGCGAAGGGTTGTCGAGCTGCGGAGGGTCCTTCGCCCTTTTGGTGGATTGCGGAAACCGGGATGTCGTAGGGTGGGTTAGGCGCATTCCGGCGCCGGCTGGCCATCGATCGCCGCGCTTCACATGCGCCGTAACCCACCAACGCTCGGCAACCTTGCCGCTCGCTTCGGCGGGTTGCATGCCTTGAGCGGAAGCGCGCCTAATTCACCCAGCACGGATATATGGGCTTCTAACGGGTTGCGCTGGTCACCTCGCCTGCCGCAAACGATCGTTTTAACCTAAAAACGGCAGTTAGACCGTACAAAATCCCGTTCACCCTTCTATACATCAGAACGTAGATACCGTCTTAGAAATCACGATGCAAGCCCATGATTGGGATCGAACGGTCGGCCGGACTTAAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 367007-365780 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000069.1 Methylocaldum sp. SAD2 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 367006 36 100.0 35 .................................... GCAAGTTCTGATTCGAGATCCTTGACTCGGCGAGT 366935 36 100.0 34 .................................... CAGGGCCTGGCACGCTATCAAAAATTCCGTTTAT 366865 36 100.0 34 .................................... GGCGTCATGTCCAGCAACCCAAGAGTCATCCGGT 366795 36 100.0 33 .................................... TGTCCCGCCAGCCGTCCGAGGCGTTCAGGAAGG 366726 36 100.0 34 .................................... TGTCTAGCTAAACCTGACCGCCACTACACAGTAT 366656 36 100.0 34 .................................... AGGCCAAGAATCACGGATTCCGGTTTGTTTGCCG 366586 36 100.0 36 .................................... GTGTCCCTAAAAATGTCCCTAAAAAATGCGGGTGAC 366514 36 100.0 35 .................................... GGGTGATGCAGGTTGCGGTACGCAATCGCATCCGT 366443 36 100.0 34 .................................... GACAGCTTGACGCTGTCCCGGTCGAAGAAAGTAG 366373 36 100.0 33 .................................... CAGGTTTTTAATTTTCGTTTTCATCGTCATATC 366304 36 100.0 33 .................................... CGAGTCCAGCCGCTGTTCCTGCCCCGGCTGCGC 366235 36 100.0 34 .................................... CCGTTGATCATCTCAGCCTGTAGAATGGCGCGGA 366165 36 100.0 36 .................................... CGATCACGTAGGCGACGCCCAGCGCGATGAGATAGG 366093 36 100.0 35 .................................... ACTCCTTCACGGGTGAAGAGAGTGACCGGCGTGAA 366022 36 100.0 33 .................................... CCATTTGGTTCCCGCTATGGCGTTGAGCAGCGC 365953 36 100.0 34 .................................... TGCCGGCCTAGTCGCCAGTTAGCGACTAGGCACT 365883 36 100.0 31 .................................... ACATAGCAGCCAGCAATTTGTTAGCTAAAGT 365816 36 91.7 0 ................................T.CA | A [365784] ========== ====== ====== ====== ==================================== ==================================== ================== 18 36 99.5 34 GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Left flank : AGTCCGGCCACCGACAAACGTTCCCGGCTCCAAGGCGAGATTTTGAACCTGCTGAGGCAACATCTTCCCCACGGACGGGTATTGTCCGAGTGCAGCGTACAAACCTCCGAGGGCGTAAAAGTGGCCGACGCGGTTTGGGCCAGCGCGGAGTTTTTCGCCCACCGCGGTTTGGCCAATCCTTCCCCGGAAGCCCCTGAAATCGTGGTCGAAGTGCTTTCGCCGTCAAACGGCCGGGCCGAAATGGAGGAAAAGAAGGAACTTTATTTAGCCCGTGGCGTGCGCGAATTCTGGGTGTGCCGGGAAGACGGCGAAATGCTGTTCTACAACAACCACGCCCGGCTCGAACACAGCACCCTGGCGCCCGAATTTCCGACCCGTGTCGAGTTGCCCGCATGACGCTCCGAAAATCGCCATCACTCGACGCTAACTTTTCGGTAAGCCGATTTTTCTGCAAACCCCTTTGTAAACCGTTGACTATGGAGGTGTTTTAGACACGAGCC # Right flank : AACGATGAAAACCACGATTAAAAGAGCAATCATAAGCTCTTTCCAATAACCATTCTTTTTAACCATGACAACTTACTTCGTTACCCGCCATGCGGGCGCCATCGAATGGGCGCGCGAAAGCGGCATCGCGGTGGATCGACAATTGGCGCACATGGACATGGCCGTGGTGAAAGCCGGGGATCGGGTCATCGGCACCCTGCCCGTCCATTTGGCCGCGGAGGTATGTGCCCGAGGCGCCCGCTATCTTCATCTGGCGCTCGAAATACCCCCGGATTGGCGGGGACGCGAGTTGTCGGCTCAGGATCTTAGGCGTTTCGGCGCCCGCATCGTGGAATACCGCGTCATCGCGGCTGAAGGCGAAAACCCATGAGCGCACGTGTCCTGGTCATCCCGCGAGCCGAGTGTCCATCTTTACCGGAGGCTGATGCCTGGGCGCGAACCACCTGGACGTGGCCCCGGAACTGGTCATGGCGGCGTCGCTCCGAGGCCGAGGGCGACGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 22-4328 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000034.1 Methylocaldum sp. SAD2 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 22 29 100.0 32 ............................. CCGTGGGCCGGGCAGGTGATGTATCCGTCAGT 83 29 100.0 32 ............................. CCCGGTTTGTGGATCGTGAACTGGATCGCTTA 144 29 100.0 32 ............................. GCGCGATCACGGCAAAAGCGGAGAACATCGTT 205 29 100.0 32 ............................. GGCCAATCTGGATGCTGTACAGGCCCATGGGT 266 29 100.0 32 ............................. GGGGAATGATGCGCGACATTGATAAAGCGATC 327 29 100.0 32 ............................. AACTTTTCGCAGGCAAACCAGCAGCCGGGCAC 388 29 96.6 32 ............................A ACAGCATCCACCCGGCGAGCTCGGCGATAAAT 449 29 100.0 32 ............................. CTCATGCCGGTGAATACCCCAATGCCGAACAG 510 29 100.0 32 ............................. AAACTCATGATCTACTGGCAGACAGAAATACT 571 29 100.0 32 ............................. GTTTTCCATTTCCTGACGCTTGCGCTTGTCGG 632 29 100.0 32 ............................. CCCCTTCATCCCTGCTTACGTACTCGACGTAG 693 29 100.0 32 ............................. CTCCTTCACGCGGGCCTTGAATTCTGAAAGTT 754 29 100.0 32 ............................. GGCGCTAAAGAAGCGGCGACTTCCGCAAGCGA 815 29 100.0 32 ............................. CGAGACAGATAACCGCGCTTGCGGAATGTCGA 876 29 100.0 32 ............................. CGCGAGTTCGTATTCTCACGCTGGGCGGCGTC 937 29 100.0 32 ............................. ATGGTATCGACGCCATCAAGGGCGAAGTTACC 998 29 100.0 33 ............................. CGACAGCTACGCTAACTAACACGTCTTCTTTAA 1060 29 100.0 32 ............................. ATCAGAAAACCTCTGTTTAGTCCCCTTAAGCG 1121 29 100.0 34 ............................. TTGGTAGTTCTCCCCAGGTCTCCCCCATTCTTTC 1184 29 100.0 33 ............................. TTTAGATTATTGACGATAATAGAAGCAGACACC 1246 29 100.0 32 ............................. ACATACATATTGGCAGAAGATTGCTGAAGCAT 1307 29 100.0 32 ............................. TTAGTGGTAGGAAGGGTATTAGTCTTGACGAT 1368 29 100.0 32 ............................. GAAACGATTGATGCCGTCGGCCTTGTTGTCGA 1429 29 96.6 32 ............................T AGAACTCCTGTGCTCTCGATTAACCGGCGTCC 1490 29 100.0 32 ............................. AAACTTACCAACAACCGGAATGTTGTATTTCC 1551 29 100.0 32 ............................. AGAGAAGCCGCGCCGACTCTTGAGCATCGGAC 1612 29 96.6 32 ............................C GGTTTGGCGGCGATGAACAGGCGTTGGATGAA 1673 29 100.0 32 ............................. ATCCCTGGGAACCGTTTATTCCGGATTCACTG 1734 29 100.0 32 ............................. ATCGCGACAAGCACCGCAAAAAACGGACTAGC 1795 29 100.0 32 ............................. TTGCCGGGGTCTAGCTAATGGCGGTTTACGCT 1856 29 100.0 32 ............................. ATTGCGGGCGTGGCCGGTGGGGTGAAAATGAA 1917 29 100.0 32 ............................. CAATAGCGGAATGTCCGTCATGGCCCGAAATA 1978 29 100.0 33 ............................. CCAAACCGGCGACATGAACGCGGCGGCGGCCTC 2040 29 100.0 32 ............................. ACTTCTGCCTATAACCAAGGCAACGCCATTCT 2101 29 100.0 32 ............................. GCCACACAGGACAGGACTCAGATAAATCATTT 2162 29 100.0 32 ............................. TCCACACCAGCATTCACCAAGCGGCTAGCTGT 2223 29 100.0 32 ............................. TACACAGTCGAACATACCTGTGGTCACACGCA 2284 29 100.0 32 ............................. ACCCAAAGGCGCGGGTGGGGAAGGGATTTCGC 2345 29 100.0 32 ............................. AGGCTGGAGGGTGTGTCTCGAAGTGTGCCCTA 2406 29 96.6 32 ............................A CGTATATAACACCCTTGGCTAAATCGATATCC 2467 29 100.0 32 ............................. AAACGTGGTAATGTCTGGTGGATAGACATAAC 2528 29 100.0 32 ............................. CCATACAGATTTGAGTAAGGCCTGTGAAGCCC 2589 29 100.0 32 ............................. CCGGAACCGGCATCGGAACGGACAAGCGCTTC 2650 29 100.0 32 ............................. ACGTTGCGCCCTGGAAAGAGCGCAACCAATTT 2711 29 100.0 32 ............................. CGGGCCACGGTGCTAAGTCATCCCATGGTTAA 2772 29 100.0 32 ............................. CCCGTCAAATGGTTTATTGTTCTCACTAGCCA 2833 29 100.0 32 ............................. ACGTGATCATGATCCGTTGAAGCTCAGATTTA 2894 29 100.0 32 ............................. TCGTAATTCGCCCTTTAGCCGGTCGATCTCAG 2955 29 100.0 32 ............................. CGAAGATTCTTGTTCCGCTGGTTGAGGTTGAA 3016 29 100.0 33 ............................. TTGTATCGTGTTGCGGCTGACGCGGGCGACACC 3078 29 100.0 32 ............................. GCACGTCCGATATGTTTACAGCTCGACGAGCC 3139 29 100.0 32 ............................. CATTAGGGATAGACCCCCTAGAGGTCATAGCC 3200 29 100.0 32 ............................. CTTTCTCCCGTATCTTTGTCAACAAACGTCAA 3261 29 100.0 32 ............................. GACCGGAGGCGCACTCTCGATACGGCAAACCC 3322 29 100.0 32 ............................. TAAAAACCAAACCTCACTTAGGAGTAAACATC 3383 29 96.6 32 ............................A GCAAGGGTATCGTCGACGATTACGGCGCACCC 3444 29 96.6 33 ...........G................. CGCACGGTTCACGTGGAGTGGCGTATTGAGTAC 3506 29 96.6 32 ...........G................. AAGCGCTAGACGGAGGATGGACCGCAAAAGGG 3567 29 96.6 33 ...........G................. GCGTATTCCAAGGGCTCTCATCTCGAATACCAA 3629 29 96.6 32 ...........G................. GATTGTATTGCGCCAGCTTGCAAAGGTCGGCC 3690 29 96.6 32 ...........G................. AAGAGCGTCGGCCCAAAACCACCGATCCTTGA 3751 29 96.6 32 ...........G................. TTAGGTGGAAACGGGCTAGAAGTTAGGGGGGG 3812 29 96.6 32 ...........G................. TAGTCGCGGATAGACATCCCCTCTTCGTGGTC 3873 29 96.6 32 ...........G................. CGCTGGCTGCGCAGACTACGCTTAATTGTCCT 3934 29 96.6 32 ...........G................. CCGATTGGTCTCCGCTGGCCGGGCGCGAGGTG 3995 29 100.0 32 ............................. GGGGGCAACGTGTCCGCATGCCGGATATTCCG 4056 29 100.0 32 ............................. TCCAATCCGTTTCCCCCATGGATGTTTATCAC 4117 29 100.0 32 ............................. CGCCAAGGATGCCGCCCATGTCACACCTCCGC 4178 29 100.0 32 ............................. CGCCCAAAATCTATCGGCGTGGCCGTTTTCGG 4239 29 100.0 32 ............................. ACGACACCGCAAAGGCCCCGCCGCCGACAACC 4300 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 71 29 99.3 32 CTGTTCCCCACATACGTGGGGATGAACCG # Left flank : CAGGTGAGGATTTAATAATGAC # Right flank : TGGTAGTCCGTTCCAGGGCACCGCAAGTACACTTCCCTGTGGCCTCAGCCAGCCCGCCCATCCGGGGCGGGCGTTCGCGGCTCCTACGCCCGCCGCTCACCCCCACGCATGGGGGATGAACCGGGTAGTCCGTTCCAGGGCACCGCAAGTACACTTCCCTGTGGCCTCAGCCAGCCCGCCCGTCCGGGGCGGGCGTCCGCGGCTCCTATGCGCGCGGCTCGCCTCCACGTACGTTGTTCTACCAGTTCAAGCGCTGCGCGCTGTCCTTGATAATATTCGTTTCAATATGCCTACAGCCTGCTGTTTTCGGTTGATCTTCATATATTTGCCCGACGCGTCTCCACTCATGTTCGCTCAGAGCAAAGAGTGCACGCCCATATTCAGACGCGATTTCGCCTTTGTTCAAACTCTTGAACTTGGAAACCGCCTTTCACCGCTCGGATCGACTCAAAAAGTCTCATGAATCCCGAGTGTTCCGGCTTTCAGCTTCCTCAACGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACATACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53917-53462 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUGL01000026.1 Methylocaldum sp. SAD2 contig00083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53916 28 100.0 33 ............................ CTTAGCAGGGGATTAGGCGCCACCGCCAAGGGC 53855 28 100.0 33 ............................ TTGCCAGGCCGCACCGTCATAGATCGCGACCTG 53794 28 100.0 33 ............................ CCGTTGAAGCCGGTGCCCCAGGCGTATTTGAGT 53733 28 100.0 33 ............................ TTCAGGCTCCAGCATGCGACCGGACTCAGTGAG 53672 28 100.0 33 ............................ TGGGCGATCTCGCGTATGCCTTCCGGTTCCAGC 53611 28 100.0 33 ............................ CGCGGACCAGGCGGTATACATCGTCAGGTCCGG 53550 28 100.0 33 ............................ TCTAACCGCAGGCAATACCTACCGCATTGTGGC 53489 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GGCTCCCCCGCATACGCGGGGATCGACC # Left flank : ATTCTCCCGGTCATTTTTTTCTGTT # Right flank : CTAACTCAAGGCCCCGCTTCGGCGGGGCCTTTTCATCCTGCTGATTTAGGACACACGGAGCGAAACCGATGATTAGCGATCATGCGATGGTTAGACTGTCCGATTATCCCATCCTGGAAGAGCTGGGGCAGCGGCGCACGAAGGCCAAGCGGCTCGACCGTAGGGCCTGCCGCTACATCTATCAAACTGGCCTGTCGGAAATCGATCCCGCCCGGATCGGGGCGGCGGAGCGCCAGCTTATCACCGAGCTGGGGATTAGCTGGCGCATTCGGGACGATGCATTGATGCGCCGGATGGCTGGTAAATATATTTGGTGGAAAACGCCAGACGAGGCCTTGGAACGGCCTGAGCGTGTCATAGCTCAGGTTATGGACATAGGGGACTACGAGGATGTTCAGGCGCTGGCGGAGCACGTGGGGGATGATGCGCTGCGGGATGTTCTGACGCATGCCGAAGCCGGCTGGTTCAACGAACGCTCCTAGCACTATTGGCATTACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //