Array 1 316-526 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQX01000138.1 Leptospira weilii str. LNT 1194 contig_138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 316 29 100.0 32 ............................. CACAGACCGGACAAAGTTTCTTCCGATATTGT 377 29 100.0 31 ............................. CTTTACGAAACTTCAGATATGAAGTAGAGGA 437 29 100.0 32 ............................. TTTCAAACTCTTTTAGATGTTTTCCACGAAAC 498 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : CTGAACCTCCCCCGAATGAGTGGACACGGTCGTGCAAGTTAAAAAGGATAAAGCATGGCTCGTAAAACACAATACGACGAAGAATTTAAGAAGAACACGGTTGAACTTCTGGTAAAGTCCAGGAAATCCATGACTCAGATCTCAAAAGATTTGGGAGTCTCTGTGAATACCTTGATAAATTGGAAGAAGAGGTATCTGACGGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGCC # Right flank : CGTTTGAGCAGTTGACGCCGGTTGTTGTGTTTCTTTTCCCCACACACGTGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28119-26873 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQX01000088.1 Leptospira weilii str. LNT 1194 contig_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28118 29 100.0 32 ............................. GTCAAAATCTTCCGGAGGCATCTCAGTCAATA 28057 29 100.0 32 ............................. AAAAGTCCGAAGACAAGAAAATCTTGAAAAAA 27996 29 100.0 32 ............................. ATGATTTCGTTCAAAACTCCTCTTCCGGTAAC 27935 29 100.0 32 ............................. AAAAAAGACGTCGTCTCTATGGAATTCGATGT 27874 29 100.0 32 ............................. GACCGCCCCTTTCTCCGTGAAATTGAAATCCA 27813 29 100.0 32 ............................. ACAAGACTTTCCGGTTACGAAACTCGCAAGAA 27752 29 100.0 32 ............................. AAGAAAAGGGGGAGCTATGCAAGTTCAAGAGA 27691 29 100.0 31 ............................. AACTCTCAAACGCAATGGGCAACGACCCGAA 27631 29 100.0 32 ............................. TTTCAATCGAGAAAGAAGTACAGCAGGTTGTC 27570 29 100.0 32 ............................. GGAGATCCTAAGTGAAACAGAGTGAGAAAAGG 27509 29 100.0 32 ............................. GAGAATGCTCTATTAGATAAATTCGAGGCCTA 27448 29 100.0 32 ............................. TGGTTGTTTGTTTGCCTTTTCGTTTTGGGTGC 27387 29 100.0 31 ............................. ACGTCGGCAATATGGTTGGCCAGGTCGCACA 27327 29 100.0 32 ............................. GAACACGTTTTAATAGATAAATTCGAGGCCTA 27266 29 100.0 32 ............................. GAAACTCGACGTGCTCCCTAATCCATTCCTCT 27205 29 100.0 32 ............................. CGACATAAAAGGCAGTAAGAGGAAGGGATAAT 27144 29 100.0 32 ............................. TTCATTGAGCATCACGGCGGCGGAGAGGCGTA 27083 29 100.0 32 ............................. TTCTAAAATACGAGTGAGGTAATGGAACTATT 27022 29 100.0 32 ............................. GCGGAAATTTTAAATCGTCAAGAGCATTCGCC 26961 28 93.1 32 .......A..............-...... ATCTATTAAATGCGTCAACATTGACGCATTTG 26901 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCAAGCGTTGTGCCGAGTTTCATCTAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAG # Right flank : TTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21710-21132 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQX01000093.1 Leptospira weilii str. LNT 1194 contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21709 29 79.3 32 .....................TTGAAC.. GAAGCAAAATGAATACAATCAAAAATTGGTTA 21648 29 79.3 32 .....................TTGAAC.. TAGCTAACAAAGCACGAATTAAAAGTGTCTTA 21587 29 100.0 32 ............................. GGATGTGATCTTGTCTTCCATCGTAAGTCTCT 21526 29 100.0 32 ............................. CGGTTTGGCCGATTTTTGGGAAGGTCGATAAA 21465 29 100.0 32 ............................. ATACATTGAAAAGAACTTAGACAGCGATTCGG 21404 29 100.0 32 ............................. TAAAGCCCATCTACAAAAATGCAAAAACAGAA 21343 29 100.0 32 ............................. CGATCACCGCGCTGAACCGAGTCATAGAACTC 21282 29 79.3 32 .....................TTGAAC.. GTGACAAACATAATGAATCTGAAATATTTGAG 21221 29 79.3 32 .....................TTGAAC.. AGATAGAAAGAGAATATCGCGACCGGAAAAAA 21160 29 65.5 0 ............T.....A..TTAAAATT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 88.3 32 CTTTTCCCCACACACGTGGGGACTTTTCG # Left flank : CACACGTGGGGTTGAACCGATACAAAAGGTTTCGAGTGGTTTCTAAACCT # Right flank : TTCAGTCAAAACAAATAAAGGCGAAATAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAACTTTCAACGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGAGGTATAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATTAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAGCTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGACTTTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18078-17681 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQX01000083.1 Leptospira weilii str. LNT 1194 contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18077 29 96.6 33 ............................A GAATTAGGTTTTTTAGGTTTACCAAAATTAAAC 18015 29 96.6 33 ............................A GAAGGGATTCCGTTTCGCCTTGTTCATCCAAAG 17953 29 100.0 32 ............................. TAAATACCACGCATCAACGGTAGAATATACAC 17892 29 100.0 32 ............................. AAGAGCGAATCGTCTTAAAAGGTTATCAGGGC 17831 29 100.0 32 ............................. AATATAAAAAACAGAATAAAAGAAGTTTTAAA 17770 29 100.0 32 ............................. TATTCTCTGGTTGGATCATCCGCTAAAAATTC 17709 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGT # Right flank : TAGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTCTTGAATCGTTTTAAACTTTGATATAAATCTTCCTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGACAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1988-1778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQX01000082.1 Leptospira weilii str. LNT 1194 contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1987 29 100.0 32 ............................. ACTCGTCGGTACTTTCAAGGCGATCCCTTCTT 1926 29 100.0 31 ............................. GCAAGAGGATTTATGGGATGATACGATTAGA 1866 29 100.0 31 ............................. ACATTGCCGCCCTGGGGATGGTTTATTTTAA 1806 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //