Array 1 18172-17943 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIA01000009.1 Bacillus pumilus SAFR-032 strain DE0037 NODE_9_length_119648_cov_46.240117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18171 32 100.0 35 ................................ GTGAACACCGTTAAATAAATAATAGTAAAAAGACA 18104 32 100.0 33 ................................ CCTGCCACTTCCTCAAAAGTTCTCGTAATCATT 18039 32 100.0 33 ................................ ATTGTTATGTACAAAACCTTTATCAAGAATGCT 17974 32 71.9 0 .A........CC...A....A.A...CAC... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAATTCGCACTCTATATGAGTGCGTGGATTGAAATACCATCAAATTAATGAATTCAAAAAACTGTGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCAAATTATATAAAGTCAAATACTTATCCATATCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGATGATCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCG # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18903-18463 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIA01000009.1 Bacillus pumilus SAFR-032 strain DE0037 NODE_9_length_119648_cov_46.240117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 18902 32 100.0 35 ................................ TCAAATTCCGCCATAAGTCACATCCCACCCCTCTA 18835 32 100.0 34 ................................ CCGATGCAGCCACGCCGACCATCCAATCGCCGTT 18769 32 100.0 34 ................................ TAAAATCACTTGCCTTTGAAGAAAATGTGATCAG 18703 32 96.9 44 ............A................... ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAA 18627 32 93.8 33 T...........A................... ACCATCAAATTAATGAATTCAAAAAACTGTGAA 18562 32 93.8 35 ...........CA................... CTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAG 18495 32 84.4 0 ...........CA......GA......A.... | T [18466] ========== ====== ====== ====== ================================ ============================================ ================== 7 32 95.6 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : ATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTCCAATCTTCGTGCTTCTTGACGCGATCGACGTCGCACTCTACATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGCGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGGGTGCGTGGATTGAAATGTGAACACCGTTAAATAAATAATAGTAAAAAGACAGTCGCACTCTATATGGGTGCGTGGATTGAAATCCTGCCACTTCCTCAAAAGTTCTCGTAATCATTGTCGCACTCTATATGGGTGCGTGGATTGAAATATTGTTATGTACAAAACCTTTATCAAGAATGCTGACGCACTCTCC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27407-26979 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIA01000009.1 Bacillus pumilus SAFR-032 strain DE0037 NODE_9_length_119648_cov_46.240117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27406 32 100.0 33 ................................ TCTGGAACCGTAATCGGTGTGACCATTTTCGTC 27341 32 100.0 34 ................................ GAATTTACAGGGAAAACAAATTCCGACTACTACA 27275 32 100.0 34 ................................ TAAAATGGCATTTATGTTACTTAACAAACTTCTA 27209 32 96.9 35 ...........T.................... AACGCTGAGGATGCACGAGAAGGAAAGAAAGACGC 27142 32 100.0 34 ................................ AATGAACAAATGAAGTGGCAGGATCGTTTGGCCG 27076 32 100.0 34 ................................ ACCGATATTTTGGGTGCTGCTGAATCGAAAAGTA 27010 32 93.8 0 ..................A....A........ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACGAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCTCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : ATGCAGTGACCTCCTGAATGTATGATGAATTGTTGTCGCACCCATATATGAGGTGCGCATGGTTTTCAATGATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAATCCATCAAAATAGACTGTTCATTTGTATAGTGAAAACATGACTTTTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTTGTACTGAATGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //