Array 1 933612-937175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030158.1 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 933612 28 100.0 33 ............................ GGCTGATGGCTGGCGCTACCGCCGGCCCATCTC 933673 28 100.0 33 ............................ CGGCGGGTGATCCCGTAGGCCGCATCTCTGATG 933734 28 100.0 33 ............................ ACAGGCCACCCTGATCATCAACGAGCACGACAA 933795 28 100.0 33 ............................ TATGGGATTTGCGAGACGTGCTACGGACAGGGA 933856 28 100.0 33 ............................ GGCTGATGGCTGGCGCTACCGCCGGCCCATCTC 933917 28 100.0 33 ............................ TGCAGCACGCCAAAGCCCAGCCAGGGCTTATGC 933978 28 100.0 33 ............................ GACGAGATCATCCCCAACCTGGGGGACGCGACC 934039 28 100.0 33 ............................ GTGCCCGGTACACGATGGCGTCCCCGGTAGTGA 934100 28 100.0 33 ............................ CTCGGCGCGCAGCTCTCCGCGCGCCTCGTCCTC 934161 28 100.0 33 ............................ CGGGGTGCCGCTGGTGCAGGTGGGCCCGCTGAC 934222 28 100.0 33 ............................ GCGCGACCTAGACGTCTTTCTCAAGAGGTTGGC 934283 28 100.0 33 ............................ GTAGCTCGGACAGGGGCATAGCGGCGGTTGCTG 934344 28 100.0 33 ............................ TACTCCCGGATCTACAGCCTAGATCTGGACGAT 934405 28 100.0 33 ............................ TCCGCCTTAAGTGGGGCCAAGTTGAGCCGATAC 934466 28 100.0 33 ............................ CCCGACAAGGAGCGTCTGCGCGTCGGCCACGTC 934527 28 100.0 33 ............................ TCAACGGCGGGGATGAGGTCACGCAGCGCCGTG 934588 28 100.0 33 ............................ GGCACTCGGCCTCGACGAGGACGCCTACCGTGC 934649 28 100.0 33 ............................ TCATTGCCGCCTACCGCGCCGCACTCGACGAGG 934710 28 100.0 33 ............................ CACGTCGGAAGAAAAATGAAGCTCGATTTTTCG 934771 28 100.0 33 ............................ GTCATGACTGAGCAGGACATCATCAGCGCGTAC 934832 28 100.0 33 ............................ ACTTCATGTGCTCACCGACGGCCGCCAGGTCGT 934893 28 100.0 33 ............................ CGCTAGCTATGGCAAAGCAAGAACAGCCCGCCA 934954 28 100.0 33 ............................ GTGCCATATCTCACCGCACCCGTGGGGGGTAGC 935015 28 100.0 33 ............................ TCTTGGCCGCCTTACTCTCGACGCGCCTGGCTG 935076 28 100.0 32 ............................ TGGCGGGCAAACACGTCTATGACGAGGCCCGC 935136 28 100.0 33 ............................ CTGGCCGGAGGAGGATCATGACTGAGCAGGACA 935197 28 100.0 33 ............................ TCCAGCCAGTATCCTCCTGCCCCACCCGGTAGG 935258 28 100.0 33 ............................ TTCCGTCAACAATTTCCGGCCCGTTTTCGGCAA 935319 28 100.0 33 ............................ GAGCTTCTTATCCTGCTTGTGATCGTCCTCCAG 935380 28 100.0 33 ............................ CGTGCTATGCAATTACGCAAGAAGAATGCAAGA 935441 28 100.0 33 ............................ CCGCCCATTGATGACGGCAGCGGCGGCGGGGGA 935502 28 100.0 33 ............................ TGGCAAGGAAACCGAAGCGGAGGCAGAGGAAAC 935563 28 100.0 33 ............................ GACGGCCGGGGCGTCACGTCGAAGCCTAGTAAA 935624 28 100.0 33 ............................ GCGATATTTACGCTATTTTCCTGCCCCTGTTTT 935685 28 100.0 33 ............................ CTCCGCAGATTCCTTGAATATAAGGGTAGGGAT 935746 28 100.0 33 ............................ GCATGGCACGCCGTGACCGCCGAAAGGAGCCGC 935807 28 100.0 33 ............................ CCTAAACCGAAACACGCCATGAACACGCCGAAA 935868 28 100.0 33 ............................ CCCAGCCGATGGCGGCGTTTAATCGTTCCATAC 935929 28 100.0 33 ............................ GTTGCTCCTCTGCTGATTGCGTCGCTGGATGAG 935990 28 100.0 33 ............................ GTTATTTGCGCCCTTTGTCTGATCGAAGAAAAC 936051 28 100.0 33 ............................ CCTGGCGGCATCGTCGTAGGCGATGGGGATGAC 936112 28 100.0 33 ............................ CGACCTATGCCGTCGACGTGATAGTCCGACCCC 936173 28 100.0 33 ............................ CCTTCGACCCAGCTTTGAGCCCCATCATGTCGA 936234 28 100.0 33 ............................ TCTGCGTGGCATGCCGTGACCGGAGAGACGAGC 936295 28 100.0 33 ............................ TCGGCCTTAAGTGGATCAAAGTTGAGCCGATAC 936356 28 100.0 33 ............................ CCTGCGGTGCGAGGGGGGGCGTGGGGGCGTCGC 936417 28 100.0 33 ............................ CATTCAATGCGTGCTATAAAGACCTCACCTTCC 936478 28 100.0 33 ............................ CGGCACAGCGATCACGGTGCGACTCCAAAGTCT 936539 28 100.0 33 ............................ CGTACACCCAGGGGCCGGGGTCGGTGCGCCTGG 936600 28 100.0 33 ............................ GACCCAGAGCTTCGGCGGGACGGTGCTGCAGGA 936661 28 100.0 33 ............................ TACGAAGCCGAGGCCGAATCCGCCATGCTTACG 936722 28 100.0 33 ............................ CCTGGCGGCATCGTCGTAGGCGATGGGGATGAC 936783 28 100.0 33 ............................ CGACCTATGCCGTCGACGTGATAGTCCGACCCC 936844 28 100.0 33 ............................ TTGACGAGGCCTCCAAGTTTTCCTCCCCATACA 936905 28 100.0 33 ............................ CGTCGATGGCCCGCCCTACGGTGTGCCACGAAC 936966 28 100.0 33 ............................ GTATATCGCCAAAGTGGCCGACCCGGCCGGGGG 937027 28 100.0 33 ............................ CGTGGACGTGCCGTGTGAGGATGATCCGCGCTG 937088 28 96.4 32 ..............T............. GCCCGTGGCAAAGCCTCACCACCGCTCCGGGT 937148 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.9 33 CTTTTCCCCGCAGGCGCGGGGATGACCC # Left flank : CCCGGCCCGTCGGACGCCTACCGGGCCCGCTGGAACGCCCTGATGCAGGACATGGCTGCCGCCCATCCCGCCCCACAGGACACCACGGCGGCCCCTGCCACGGCAGCGGACACGGCGGCCGCCTCACCCCCGCCGATGCATGGAATGGGCCACATGCTCGACGCGCAGGCGCTCTGGGATGCCGGGATGGCCTACACGCTGGCGCAGCATCTGATGCGGGTGCCCGGTAGCCTCGTGGTGCATCTGGCCGGGGCGTTCCACGTCGAGCGCGGCCTGGGCACCCCCGAGCAACTCCGCGGCTACCGCCCGGGCACGCGGATGCTCGTCGTGGCGATGCGCCCGGCAGCCGATGTCACGGCCTTCGACGCCGACGAACATGCCGGGCTGGGCGACTTCATCGTGCTCACCGCGGCCGCACGTTGAGCAGCTACCGCTTGCGTACCAACCTGAAATGTCCGTTCTTTGACACACAAACCGGCGATTCTGGGCCATTTTTTAGT # Right flank : CTTCTCGTTTCCGTCGCTGCGCTCGCGGCGGGCTCCTCGCGGCGGGCAGCCGGCGGTGGACCCTTCGACCATCGCCCCCGTCCCGGACTGATCTTTTTCCGGCGTCTCCCCTATACTTCAGGCACCTATTACTTCAGGCACCGGGCGGCCCGGGCCGCCCGGGCGGCCGCCCCATCCCACCGCCTTTCTCCCTCTACGTCCCCCCCATGCCCGTATCCGACACCTCCTCCCTCGCCATCACGTTCAGCGACATCGAAGCGGCTGCGGACGCCCTGCAGGGGCAGGTCGCGCGGACCCCCTGCATGGCTTCACGGAAGCTCTCGGAGCAGACCGGGGCGACGGTGGTCGTCAAGCTGGAAAACCTTCAGTATACCGGCGCCTTCAAAGAGCGCGGAGCCTTCAACAAGCTCCGGTCGCTGACGGCCGCAGAGCGGGCGCGGGGCGTCATTGCCCAGTCCGCCGGCAACCATGCCCAGGGCGTCGCCTATCACGCCCGGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCAGGCGCGGGGATGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1238873-1235250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030158.1 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================== ================== 1238872 28 75.0 149 GC....A.....C.......A.G...T. GGGCGGGGGCGAGCGTTCGGATATGGCCTGCTGATGGTTCGCCCGGCCTGACGAAAACATGGTGAGCGAAGCGCCGGTACCGATTGCGTACCGGCGCTTTTTTTCCGTTCTTTGACACAAAAAGCGGCGTTTTCGGGCTAATTTTTAGT T,G [1238856,1238864] 1238693 28 100.0 33 ............................ CCTCGCCGTTCGCGCCATCGCTCGTGCGGCGGG 1238632 28 100.0 33 ............................ TGCCGCCGACGCCGACGATGATCCCCCCGACGG 1238571 28 100.0 33 ............................ GCGGCGGCCACCAGGCCCCCCGCCACGATGGTG 1238510 28 100.0 33 ............................ CCGCGTGGGCTTCCGCCGCTCGCAACCCTGACC 1238449 28 100.0 33 ............................ CTCACGTCGGCAGACGCTGTCGTCGTAGGGGTC 1238388 28 100.0 33 ............................ TGGCTGATACCACACGACACACCGATCCCGGCG 1238327 28 100.0 33 ............................ GCACTCCAGCAAGCTGGAGATCACGGCAGAGCG 1238266 28 100.0 33 ............................ CGTCCCGAGTAGCTCCCGGTAGGTGGCACGAGG 1238205 28 100.0 33 ............................ GTAGTGCGTGAGTCCCACGTCGATCGCGCCGAA 1238144 28 100.0 33 ............................ CTTCAAGGCGCCGCTCTCGCAGGTGCCGCTGAG 1238083 28 100.0 33 ............................ CCTGCAGGGCCTGCTCCAGCTCGCGCCGCGCGG 1238022 28 100.0 33 ............................ CTTGGCCGCCTTGGCCTCCACGCGGCGGGCCGT 1237961 28 100.0 33 ............................ CAAACAGTACGCGCTCGTGTGGGATCAGGACCT 1237900 28 100.0 33 ............................ GTCGCTGTATGCCAAGCTGTCGGCCCTGGAGCG 1237839 28 100.0 33 ............................ GCGGTCGTCCTGCACCACCACCAAACGGAAACG 1237778 28 100.0 33 ............................ GCGGGATCGCGGGTGGCCATGCGCCGGGACATC 1237717 28 100.0 33 ............................ CGTCGATGCTCCAGGGGTGGGATGATCTGTGAC 1237656 28 100.0 33 ............................ GCGGTCGTCCTGCACCACCAAACGGAAACGATA 1237595 28 100.0 33 ............................ GTGCCATATCTCACCGCACCCGTGGGGGGTAGC 1237534 28 100.0 33 ............................ TAATAGAGCCCCCGGCGCTCAGGCCGTAGGCCA 1237473 28 100.0 33 ............................ GTGCTGGAGCCGCCGGCGGCTGCGCCGGCTGAA 1237412 28 100.0 33 ............................ CGCACCGCTTTTCGTAGCCCAAGCGCCAAGCAT 1237351 28 100.0 33 ............................ TAGGTCAATGGCGAGGCGGTCGTGTTGTACACA 1237290 28 100.0 33 ............................ GAAAGCCCCGCACGTCTGTCTGGACGTCGATGG 1237229 28 100.0 33 ............................ GAGTAGTGCCCCGCCCCGTCACTACGATCCCCG 1237168 28 100.0 33 ............................ CACGACCGCCAGCCCCCTGACCTATTTCGGGTC 1237107 28 100.0 33 ............................ CGTCGTCGTCTATGCCGTATTTTAGCGACAGGG 1237046 28 100.0 33 ............................ CTCCGGCAACGTCTGTAAATGAGCCGCATTCCG 1236985 28 100.0 33 ............................ CCCTTCCGGCAAGATCCGATTCCCTGCCCTCAA 1236924 28 100.0 33 ............................ GATGGCGGCAAAGTGGCGATCAGCCTCCTCTAC 1236863 28 100.0 33 ............................ CGTGGCAGTCGTCCCGGCGCTCTTGCTATACCC 1236802 28 100.0 33 ............................ CAATTTGCGTAGCAGTAACCGCAGTTTCTTTCA 1236741 28 100.0 33 ............................ GCTCGTGCGGGTCGCTCCCGTTGCGACCGCGCA 1236680 28 100.0 33 ............................ CACCTCGGCGGCGTGGGCACGCGCCCCCGGCGA 1236619 28 100.0 33 ............................ CCGATGGGATGCCCTCGACGCCGAAGATTGGCT 1236558 28 100.0 33 ............................ CGGTTTGCGCGATACTACAACAAAACCGGGCTG 1236497 28 100.0 33 ............................ CGCACAGAATCGCGTCCCCGTCATCCCCGATGA 1236436 28 100.0 33 ............................ GGTACTGCATGATCCGGGCATAGTCAACGAAAC 1236375 28 100.0 33 ............................ CGTCGGTCTGGACGTCGATGGCCCGTCCTACGG 1236314 28 100.0 33 ............................ GCTGCGGGCTAAGATCTCGGAGGTGACGGGATG 1236253 28 100.0 33 ............................ CTGGTGGCTCGTTGGGACATAGACGAGGACGAC 1236192 28 100.0 33 ............................ CGGGCGGCACTACAGCGCGAGGTGTCGACGCTG 1236131 28 100.0 33 ............................ GCTGCTCGTCGTAGACGGCGCGCAGGCGCTCCA 1236070 28 100.0 33 ............................ GCTCATTCTCATCTCCATTCTGATCCCCGTTGT 1236009 28 100.0 33 ............................ CCTGAACGCGCAGAGCCATCAGGTCACCATCCC 1235948 28 100.0 33 ............................ CGCCTGCAGGCACGCATCACCGACGCCGTGAAC 1235887 28 100.0 33 ............................ TCTCGTTCGTGTCGCTGTCGCCCGCCGCCGACA 1235826 28 100.0 33 ............................ GTATCCGCTTAACAGGCGCCCGGCATGGAAGAA 1235765 28 96.4 33 ........T................... CCATGCCGCCGTCGTGGATGCCATCCAGAACGG 1235704 28 100.0 33 ............................ CCGTTCCACGTTTCGGGAACGTTAGGCGTGAAA 1235643 28 100.0 33 ............................ GCCATGTACAGCCGCCACCGTCTCGGGGAGCCG 1235582 28 100.0 33 ............................ GCGGCCGCCTCATCCTCCGGCACGCCGGGATCC 1235521 28 100.0 33 ............................ GCAACGGCAGCGCCACCGGTCCCCAGCGACGGG 1235460 28 100.0 33 ............................ TCATCGAGTCGCCGCGGACGAAGCTGAAGGTGA 1235399 28 100.0 33 ............................ CGCCGATCACACCAACCAGACAAACCGCCATGA 1235338 28 100.0 33 ............................ CCGTCGCAGAACCCGGAATCGTAAAGGTGTTTC 1235277 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ===================================================================================================================================================== ================== 58 28 99.4 35 CTCTTCCCCGCAGGCGCGGGGATGACCC # Left flank : CACGGCCGTTCCTTTTCAGCCTCGACGAACGGGGTTCACACCACAGCCTGCTCGTCCAGAGCACCCGCGCCCCCGACTGGGGCTTCCTCGACGGCACGGCGCGGATGCAGACGAAATGCTTCGACCCACAGCGCATCCCGGCCGACACCCCGCTGCGGTTCTTCCTGCGCGCCAACCCGACCGTAGATCGGAAGGGTTTCCGCGACGGGAAGAAGCGCCGGGTGGCCGTGGGGATCAACCCGGAGCTGGCCTTCCGGCGGATGGGCCGGCCCGGAGACACCCCGACGACGCCCGAGGCGATTGCCGCCTGGCGTGAGGCCGAGCTGAGGGGCTGGCTCGAACGGCAGGGTGAGCGGAGGGGGTTCGCCGTCGAGGCCTGTGCGCCCGGCCCCATCGTGGCGCGCCGGATCGTCCGTACCGAGCGCGGCCGTCCCCGGGGCAAGGCCATGACCTTCCACGAGGTCGAGTTCACCGGGACGCTGCGGATCACCGACCGGGAC # Right flank : AGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCCCCCAGCCAGCAGCGTCTTCAAGAACACGAAGCCGTTTTCTGACGCACAGAGGGTGTTGTAAGCGCTTACAGGCTGCCGTTCGGCGAGGCAATTTTGGGAAGACACCGCCCCGTCGTGCAGAAATTATCGCAGACAGGCTGTACTTTATCGGACGGGTGCTCCCCCCGAGGGCCGCACCCATCCCGACGCATCCGTTCGTTTGCAGGAGATCCAGGGAGGCACGAGATGGCAGCGCATCAGGAAGGGCTTTCGCGGCGCGCGTTCGTGCAGCGCGGCTCGAAGGCCGCCGCCGGGATGATGGCCGGGGCGCTGGTCGCTCCCCGCCTGCTCCGCGCCGAGGCCGCCGACGCCGGCGCTCGCATGCGCTTCGGGCTCGTCACGTACCAGTGGGGGCGAGACTGGAACCTGCCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCAGGCGCGGGGATGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1882245-1879263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030158.1 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 1882244 37 100.0 37 ..................................... GGGATGTAGCGCGCCCCGTAGATCAGCAGATGCAGAT 1882170 37 100.0 34 ..................................... TCCGTGAAGGCCACGATCTCGCGGACACCCTCGG 1882099 37 100.0 36 ..................................... CCTACGAGGATGCGGCGTGGGATCGGCTGACCCGGC 1882026 37 100.0 37 ..................................... TTCGACGATGCCGTACTATAGGTGCAGTCGCAAGGGC 1881952 37 100.0 35 ..................................... TTGGGATCGGCGGCGGCAATTACGGCGGTAATACC 1881880 37 100.0 33 ..................................... GTCCGTTGTATTTTGCGCACGGCGTGCCGTAGA 1881810 37 100.0 35 ..................................... TGTAGCCCTTTCATCCCACCCGAAAACTGGAACAT 1881738 37 100.0 36 ..................................... TCCGCCTAACAACGGTTTCTGAGAAATGGATATTGA 1881665 37 100.0 37 ..................................... GGCAGATACGCTGCAAGTAACCGCATTCACTTACCGG 1881591 37 100.0 38 ..................................... TCGCCTGCCCGGTGGCGGTCGATGGGTGTGCGCCCCGG 1881516 37 100.0 36 ..................................... ATAGTCTGAGCATCCATCTGAGAACCCGGCGTCGTA 1881443 37 100.0 35 ..................................... TGGATTAAGCGAGGATGGATGGATTGGTACGACCT 1881371 37 100.0 35 ..................................... TTGATCTCGCCCTGCGGTATGTCAATCGTGACCTG 1881299 37 100.0 36 ..................................... CAGGACAACCCTTACATCGGGGCCGACTACGTCGAG 1881226 37 100.0 36 ..................................... ACCAAGAGCACGGATTTCGGCTTCGACCTGGACGCC 1881153 37 100.0 36 ..................................... AGCACCTTAAATGCGTTCGGGCTCGTCATGCAGGGG 1881080 37 100.0 37 ..................................... TCGATGACGACGGCGACCTGGCGGCGCTGCACGACGA 1881006 37 100.0 35 ..................................... GGCATGCGGCTGCCGGCCTTGCGCGCCTCCAGGAG 1880934 37 100.0 36 ..................................... AGTATCGGTTAAGAGGTCGTACCGTTGCGTGTTCGA 1880861 37 100.0 36 ..................................... GCGGCGAGGTAGCGATGGTTGCCGGCGAGGATGTAG 1880788 37 100.0 35 ..................................... TTGGCGGGATGTCATGGATTCAATCCTGGACATAG 1880716 37 100.0 37 ..................................... TTCGCCTCGGCAGCAAGCTTTGACAGCTCCCCCTGAA 1880642 37 100.0 38 ..................................... CATAGCCGGATGCGCCGCGGGCCGACGAAGGCGAAGGG 1880567 37 100.0 35 ..................................... GCGTCGGACCAGCTCGTGGTTGCCCTCAGCAACAC 1880495 37 100.0 35 ..................................... TCGGGCCGCGTCAGCAAGGCGTGGTACGACGTGGA 1880423 37 100.0 34 ..................................... GTCAAAGTAGTACAAAAGGGCTTCGCCTAAGATA 1880352 37 100.0 37 ..................................... ATTGACAGCTCGCCACAGGTCAGTAGTCTCAGGATCG 1880278 37 100.0 34 ..................................... GGCCGGGTCATCGGCGGCCTCCGGCTGCTCCCGG 1880207 37 100.0 36 ..................................... GGTGTAAAGGGTGAGACTGCGCGGGATATGCTCCAC 1880134 37 100.0 36 ..................................... GGCGGCGGTGGCGCACTCCAGGGCCCGCAGCGTTCG 1880061 37 100.0 36 ..................................... GGCGGCGGTGGCGCACTCCAGGGCCCGCAGCGTTCG 1879988 37 100.0 35 ..................................... CACGAAGAGCGACCCGAAATAGGTCAACGGCTGTG 1879916 37 100.0 35 ..................................... TTATTAGCTCACGAATTAACATGTATACTTCAACG 1879844 37 100.0 37 ..................................... ATTGACAGCTCGCCACAGGTCAGTAGTCTCAGGATCG 1879770 37 100.0 36 ..................................... AGGGGACGCCCATCGTCCCCGGCGTCGCTGTGGAGA 1879697 37 100.0 69 ..................................... AGAATCCGCGCACGATGCCCCGGCGGTGCGGTGCCGGTGGCTGCGGAGCCCTGGCCGGGGGCCGGGTGA 1879591 37 100.0 35 ..................................... ATGCTTGCGGTGTGGCTGTCCACCTGCTGCTCGGC 1879519 37 100.0 35 ..................................... GGTGAGGTGTGCGACGATCTCCGCCGGCGTGGCGA 1879447 37 100.0 34 ..................................... CAGACTGGATGTCCGATGCAAAGGCAAAGCCCGA 1879376 37 100.0 34 ..................................... CGTAGAGGAGCGGCGCATCCGCCTCCCCCGCCTG 1879305 37 89.2 0 .......................G.....G.A....C | AC,CAC,C [1879267,1879274,1879278] ========== ====== ====== ====== ===================================== ===================================================================== ================== 41 37 99.7 36 GTCGCATCCGCCCTCCGGGGCGGATGAGGATTGAAAT # Left flank : GTCCCCCGATAGCCCATGCGCTCACCGGCTCCTTTCGGGAAACGCTACGACCTGCTCGTCACCTACGACGTGGATACCAGCACGCAGGCCGGCCGCCGCCGGCTGCGGCGTGTGGCCCGGATCTGCGAGGGGTACGGACAGCGCGTGCAGTACTCCGTCTTCGAATGCCGCCTGACCCGAGAACAACTGGAAGCGTTGCAACACCGGCTCGTGCAGGAACTCGACGAGACGCTGGACAGCCTGCGCGTGTACGTCCTCAAGGGCGGCCGGGACGGCGCGCTCTTCACCTACGGGCGAGACACCTACCGCGACTTCGACGAACCCCTCATTCTGTGATGCGCGAACCCGAAGCGGGCCGGCTTCCCCCGGACGGTTCGCGCCCGACCACCTGCCCCAATGACCCGGAATCGTCCTTTTTCGCCCATGCGTTCTCCTTGCGGCCCGGCGTTAGTCGGGGTATTTTGTACCCGGTATCGGCTTTTTCGGCTCGATACCGGGCC # Right flank : CGCTCCGTCGCCCGCAGGTACAACCGGGGCGCCGCCAGAAGCACAGGTGACACGGTGATATTCTCCCGGCCGTAGCACGGGCCTTGCCCGGAGCGCCATGCGGGGTTTTGTGGGAGGCCCCGCCCTGTGCCGGCGGCGCACCGCCTCCGCCCGTGAGGGTGGGGTTTGCCGCACCCATTGCGCACCGAGGCTCGCCACCAGCCGGCCAGGAGGCGCAGGGTGGAGGGATGTGGGTGGCGCGCATCCCTCCGTCATCGCGGCATCCGGGGCGGATGAGGATTGAAGCGACCCGCCCCACGACCCGTCGTACACCAACCGGCCCGAACTCCATGCAACGGCGCGATTTCGTCCGCAAGGCCACGCTGGGCGCAGCGGCCGGCGTCACCCTCGCCGGCTGCGGCGGCGGCGCCCCCGGCGAGGGCGGCGCTCCCGCCGTACAGACGCAGCGCACCATCCGCTGGCGGCTCGTCTCCAGCTTCTCCCGCTCGCTCGACACCATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCGCCCTCCGGGGCGGATGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 4 3347872-3342783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030158.1 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3347871 29 100.0 32 ............................. AGCTGGCGCTGATCGGCTTCTGCGATGCCGCC 3347810 29 100.0 32 ............................. GAGGTCTGCCGGCAGATCGCCGAGATGGTCGC 3347749 29 100.0 32 ............................. GCTGCACGGCGAGCGTGTACATGCCGTCGGCG 3347688 29 100.0 32 ............................. GCGTCGGTGTCCAGCCCCTCGATGCGCAGGCT 3347627 29 100.0 32 ............................. GGATGGCAGTTTCGACGAAGGCGTGAACAATA 3347566 29 100.0 32 ............................. ACGACGGGCACAAGCGGCGACAAGCAGTGGCG 3347505 29 100.0 32 ............................. TCCAAGCCCATCCGGCGCTTCGGGTATAGGTG 3347444 29 100.0 32 ............................. GGCAACGCGGGCGAAGTCGAGGTGCTGAGTGC 3347383 29 100.0 32 ............................. ATGACGCGACGACCGTCGATGAGGCGTCCTTG 3347322 29 100.0 32 ............................. GAAGCATCAATAAACAGGAAAGTTGCTGAGAT 3347261 29 100.0 32 ............................. GCCGGAACGCCGGATTTTACGGCGATTGCCGT 3347200 29 100.0 32 ............................. AGCCATGACCCCCACACACGACATGACCCCCA 3347139 29 100.0 32 ............................. TCAAGAACATGCCTGGCCGGTGGCCAGGCCCC 3347078 29 100.0 31 ............................. CCGCAGGCGATCCCGATTGATGGGGTTTTTA 3347018 29 100.0 32 ............................. CAGGCCGAGATAATTCCCTACCGGAATATCTA 3346957 29 100.0 32 ............................. TACCTGTGTCCCCGGCGGCCCTACGTGCTTAC 3346896 29 100.0 32 ............................. GAGAGAGCCCAGTCCCATCAGTCACCCCATGA 3346835 29 100.0 32 ............................. GCCCCGGCGAGGGCACCCCCGGCGGCTCCGGA 3346774 29 100.0 32 ............................. TGGCGCGGGGGCTGGTCGACCAGCGTGCCCTA 3346713 29 100.0 32 ............................. AAATGGGGGCCTGGGTAGAGTCAGCCTTAAGT 3346652 29 100.0 32 ............................. CGCCTTAAGTGGATCGAAACTCAGCCGATACC 3346591 29 100.0 32 ............................. ACAACGTTGGCCCGGCGGGATCAGACCTATGC 3346530 29 100.0 32 ............................. CCGGAAGCGATTCCGATTAACGGGGTTTTTAA 3346469 29 100.0 32 ............................. AAAAGGGTCGATTTGTACGCCTCGGTCATGCA 3346408 29 100.0 32 ............................. CAGGATGAGCGCGGGCGGCTGGTGCGGCGCGT 3346347 29 100.0 32 ............................. GGCGCGGTAGCGGATCTAAAAAAGCGTTTTGG 3346286 29 100.0 32 ............................. TATTTGACCTGGACACCTTGCCGGGTCGGATT 3346225 29 100.0 32 ............................. ACGGGCGCGGGGTACTGTCGCGGTACTGGCGC 3346164 29 100.0 32 ............................. TCTGCGATTTCGTGGGCTTCCAACATGGCTGC 3346103 29 100.0 32 ............................. CGTTGAGCGATGGCGCAATCTTGCACGTACCC 3346042 29 100.0 32 ............................. TTGGGGAAATAGGCGCATTTAAAGGGCTTCGA 3345981 29 100.0 32 ............................. CGTCCCGGCGCATCAGCGAGAGCATCCGCAGC 3345920 29 96.6 32 ............................A GACGCGGTCGCGCTCGGCCCGCCCCAGGTGGT 3345859 29 100.0 32 ............................. ATCTCGGAGGTGATGGGATGATCTCTACTGCT 3345798 29 100.0 32 ............................. ATCAGGTCATCGCCCCCGGCCGGGTCGGCCAC 3345737 29 100.0 32 ............................. CGTTGAGCGATGGCGCAATCTTGCACGTACCC 3345676 29 100.0 32 ............................. GCCACTTCTCCCGTGTCGGACGGTGCGAGGGG 3345615 29 100.0 32 ............................. ATCAGGTCATCGCCCCCGGCCGGGTCGGCCAC 3345554 29 100.0 32 ............................. CGTTGAGCGATGGCGCAATCTTGCACGTACCC 3345493 29 100.0 32 ............................. TTGGGGAAATAGGCGCATTTAAAGGGCTTCGA 3345432 29 100.0 32 ............................. CGTCCCGGCGCATCAGCGAGAGCATCCGCAGC 3345371 29 96.6 32 ............................A GACGCGGTCGCGCTCGGCCCGCCCCAGGTGGT 3345310 29 100.0 32 ............................. ATCTCGGAGGTGATGGGATGATCTCTACTGCT 3345249 29 100.0 32 ............................. CCATGGCGCAGACGGACGAGGGGGCGACTCGT 3345188 29 100.0 32 ............................. GCACATATCTCACCGGGTTCTGCGCTGGGGCC 3345127 29 100.0 32 ............................. CTGATGGAGATCCTGCGAGGAGCGGTGCCCCG 3345066 29 100.0 32 ............................. GTTTCGGAGCTATAACTATTGCCCCAAACTCC 3345005 29 100.0 32 ............................. GTGGAGGGATCGACCTGGCGCAGTTGCATGAC 3344944 29 100.0 32 ............................. CCATGCCGAAAAAGATTACCGTGAAAGCCCCG 3344883 29 100.0 32 ............................. CCATGCCGAAAAAGATTACCGTGAAAGCCCCG 3344822 29 100.0 32 ............................. ACGGAGCTCGAATCGGTTGCCACCTCGGTGGT 3344761 29 100.0 32 ............................. GCCATCCGCCACCGTCTCAGGGAGCCGGGGCA 3344700 29 100.0 32 ............................. GCCGCGCCGGCCTCGACGACCTGCCCGGCCAT 3344639 29 100.0 32 ............................. GCCTCGGCCGGATCGTCGTCCGGCTCCACCGG 3344578 29 100.0 32 ............................. CAGGGGGGGGTAAAAGTCAGAGATGCGCCTGA 3344517 29 100.0 32 ............................. CGCTTCGGGATCGTGCTGCGCGAGGACGAGGT 3344456 29 100.0 32 ............................. CACGGAAGCTCCGTGTCAAGAGGCATCGACAT 3344395 29 100.0 32 ............................. TACGGCGGTCGCGATGGCGTGCGCCTGCGCCA 3344334 29 100.0 32 ............................. GCCACGAGCCAGGACATCACCTTCCCCGACCC 3344273 29 100.0 31 ............................. CAAGCGGCGAAAACCCTCGCCGAGGCGATGA 3344213 29 100.0 32 ............................. GAGTCGACGGAGTACGTCATGCAGCAGGTGGC 3344152 29 100.0 32 ............................. TACTTAGCCAAAGTGGATAGCGCCGGCGGAGG 3344091 29 100.0 32 ............................. TTTATCAGATCTGCGTGCAACAGGACGCTCGC 3344030 29 100.0 32 ............................. GTCGATGGAGCACTCGGTCATCCGGCTACTCC 3343969 29 100.0 32 ............................. AAGCCTCTAGGCGAAATTTCTACGCGCATATC 3343908 29 100.0 32 ............................. ATCGCATCGTGCAGCATCAGGTCAGCGGGAAG 3343847 29 100.0 32 ............................. ATCGCATCGTGCAGCATCAGGTCAGCGGGAAG 3343786 29 100.0 32 ............................. GGCGGGTGGCAATCTGGGGCAAACAGGCTCCT 3343725 29 100.0 32 ............................. GAGTATGGATCCGGCGATGTCTCGGTGCCGCC 3343664 29 100.0 32 ............................. TAATAGTTGAGGATCTGCACGACACCCCCGCT 3343603 29 100.0 32 ............................. GCACCCTTGTCGGTGTGGTAGCCCACCGACGC 3343542 29 100.0 32 ............................. ATGCGGAGGATGCGTGTCATGGCGATGGGTTG 3343481 29 100.0 32 ............................. CCCTACAGCCCGGAGGAGGAGGCTCGCTGGCG 3343420 29 100.0 32 ............................. CAGGAGCTCATCGACGCCATCACGCTGCTGGC 3343359 29 100.0 32 ............................. TAGTATTCAATCAGCCTGGCGGCGTCGTCGTA 3343298 29 100.0 32 ............................. AAAATGCCATGAGCACGAGTTCGAAAGCCATG 3343237 29 100.0 32 ............................. GATTTCCCCTGCGTCAGATACGTGCGGTACCC 3343176 29 100.0 32 ............................. AACTACGAGGCCGCCGGCGCCATCGGGGCCTA 3343115 29 100.0 32 ............................. GGCATGTGGCACGCCGTGACCGGGGAGACGAG 3343054 29 100.0 32 ............................. TACAAATTGAAGCACTACCAAAAGCGCACCTA 3342993 29 100.0 32 ............................. CCCAGCCGATCAAGGTAGCTAATCGATCCATA 3342932 29 100.0 32 ............................. GCGGCCCGTCTGGCTGGTGGTCGCCGTCGCCG 3342871 29 96.6 32 ..........................G.. AACGCCGACGTTGGAAACTCGACGATGACGAG 3342810 28 72.4 0 ...A.......A.....A...-.C.T.TT | ========== ====== ====== ====== ============================= ================================ ================== 84 29 99.6 32 CCTGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : TGGCCCGGATCGTCCCCGACATCGACCGGGTGCTGGACCTGGAGCGCGATCTGCTGCCGGACGGTTTCGACCCGGACGACGACCCGGCCCTGCCTACACCCTGGTGGACGCCGCCGGGGGGAGGGGACGGACAATGACCGTGATGATCCTGGAACGAGTGACAGCCTCGACCCGGGGCGACCTGAGCCGCTGGATGATCGAGGTGAAGGCCGGTGTCTTCGTGGGTCGTCTCTCCGCCCTCGTGCGCGACAACCTGTGGACACGCTGCCTGAAACTCACCGAGAACGACGACGCCACCCTCATGCAGATCTGGTCCACGAACAACGAGCAGGGGTTCGATCTGCGAGTCCATAACCCGAAAGGACGCTTTCCCTACGAGAACGAAGGAATCTGGCTCGTGATGGTGGCCGACCCCGACCCACGCCGGGAGCCCTGAGCAGCGCAGACCCCAACCGGAAACGTTTTGCCCAAAATCGGGATTTTTGGCGTCGTTTTTTAGA # Right flank : CATGCTCCCTGTCACAGCCACCCAGACCCACGAGACAAACCACATCACTCCCGGCTACTGCATTCCCGGCTCCATCTTTCCGGTCGCCCAGTTCTGCCCATAACTCTGGGTCAGCGTTGAAAATGACAACGTGACGACCACCTCCATCTCCCTTTGCATCTGACGATCCGGCGTGCTAGGTTCGGAAGCGCTCCCGACGGTGTCGGTCCCGGCCGGGACTGACGCGCCTCCGCTTCCCGGATTCCCCCCGCCATGCACCTCGCGATCCACAACTGGATGAAGGTCGAGCCGCTGGAGACGACGCTGGCCCGCATCGCCCGGCTCGGCTATGACGCCATCGAACTCCAGGGCGAACCCGACAAATACGACACCCGCACGGTCCGCCGGCTGCTCGACGAGCACGGCCTGCGCTGCTGGGGATCGGTGACGCTGATGCTCGGCGAGCGCAACCTGCTGGCCCGGGACGAGGCCCAGCGTGCCCGCTCGGTCGACTACGTCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //