Array 1 2414788-2413533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035467.1 Methylotuvimicrobium buryatense strain 5GB1C chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 2414787 32 100.0 32 ................................ ACTTATATAGTGTGAGATATTCAGCGTTGACA 2414723 32 100.0 32 ................................ ATATCCTGCTTTAAATGCTTCAAAAGCATCAT 2414659 32 100.0 32 ................................ TCAGTGTCAACCGGAAAAAAACTACATGGATA 2414595 32 100.0 32 ................................ TTCTGGTGTCGTTTTAAAATATTTACAGAGAG 2414531 32 100.0 32 ................................ ATCTTCAATGCCCCACTTGCTAGCATATGAAG 2414467 32 100.0 32 ................................ AACAATTATTGCAGTAAAAACTCGGCTATTTG 2414403 32 100.0 32 ................................ GCTCTGAGTATGGGGCTGCAACTATAAAAGTT 2414339 32 100.0 33 ................................ TTTGCAAATATCGATTTCCTCTCGGATATCAGA 2414274 32 100.0 34 ................................ GGGTCAGGGTCGGGCTCTGGGTCTGGGTCCAGTG 2414208 32 100.0 33 ................................ TTTGATTTTGCGTTACGTCCGACAGTCCGCGGC 2414143 32 100.0 32 ................................ GGGTCTGGCTCTGGGTCTGGCTCGGGATCGGG 2414079 32 100.0 33 ................................ TTAGACTTGCAGAGTCGCCGGGCGGTATGCAAG 2414014 32 100.0 32 ................................ ATCTTTAATGCCGGATAATTGCATAAACTGTG 2413950 32 100.0 32 ................................ TATTTCGAGGTTCCACTATGCTTTATCAAGTT 2413886 32 100.0 32 ................................ AGCTAAAAAAGCTCGCAACGGCGGTTTATCTC 2413822 32 100.0 32 ................................ TTGCCCTCGATGCTGTGATGAGACCGGTCCAA 2413758 32 100.0 33 ................................ GATTCAGTATCGAGCAGCAAGCGAAGCTCGCGC 2413693 32 100.0 32 ................................ CGGGTTTTGTTGATAGCAGCACTTACGAAACC 2413629 32 100.0 33 ................................ GCTGCTGAGTCGTTTTTTCGGCTTTAGTGTATC 2413564 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 20 32 100.0 32 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GAAATAATGGGAGATAGATCGATGATGATACTGGTGACCTACGATGTTAGTTTTAAGACCGAAACCGGGCCCAAGCGCTTGCGGAAAATCGCGAGACTTTGCCAAGTATTCGGGCAACGGGTTCAATACTCGGTGTTCGAGATCGAAGTCGATATGGCTCAATGGACGCAGTTGAAAAACGACCTGATTAATGTGATGGACCCGGAGGAGGATAGTTTGCGGTTTTATTATCTGGGCAACAATTGGGAACGAAAGGTAGAACATGTTGGAGCCAAAAAGGTATTGGATTTGAATGGGCTGTTATTGATGTAGCGCGAACCCCAAGTACTCATGAAAATGCTTGGGGTTTCGCAAAATGCCTGTCAATGCCCAATCGATTGATTTATTTTGTATTCTTGTTATTGCATGGCGTCTGACTATAATGAATACCGTATTTGTTTCGATAGGTTCGCATTTGAAAGCGCGTAAAGCCTTTGATTTCAACCGATTGGGTAAATGCA # Right flank : ACACATTTGATCGACGGAAGGTTTCTTGTCGAGGTGAAGCGTCAGGAAAGGTCAATATCTGTCTTATTAGGCTCTTGAAAGGTATAAAAAGTCTGAAATATGCTTTGAGCTGCTCAAATATTGGGCACTTACATAGGATTTCAAACTTTACGTATCAGTCTCCGCGCAACCACAAATAACAATTGACGGCTATATGATGTCGATTTTATGCTCCCCGACAATGAAAGTATTAATAGGTTTGCTAACATTATTAGACGTATAGAAGAAAAAAGACTGATAAATGCTGTTCAAATTCGTACCATAGAAATAGAAAAACTCCGCGATACCCTGCTTCCCAAACTCATGAGCGGCGAAGTGCGGGTGAAAGTTGCCTAACTGCACAAAAAAGCGCATCATTCGATGACATAGTACGGAGGACATTATGCGCACGACGGTTGTTTTAGATGATGACTTACTCGAAAAAGCCCAAGCCTTAACCAACCTAAAAGAAAAATCCAGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2717541-2716184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035467.1 Methylotuvimicrobium buryatense strain 5GB1C chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2717540 37 100.0 32 ..................................... CTATTATTTGTGTGAATAGTTCATTATTAGAT 2717471 37 100.0 30 ..................................... AAATCCGGGAAAGATTCGCGCAACAAGTAG 2717404 37 100.0 30 ..................................... ATATATATATATATAAAGTTTAGGTTATAC 2717337 37 100.0 30 ..................................... ATAGCTTGAGCATTGACACCTTTAACAATA 2717270 37 100.0 33 ..................................... CTAAAACAAGCAACAATTTTTCTAGCCCGTCAA 2717200 37 100.0 33 ..................................... TGGTGGTTTCGTTGAAGCTTTTCATGATGTTCA 2717130 37 100.0 32 ..................................... ACACGTTGCCGCGCCATGCGTCGAACGGCACA 2717061 37 100.0 31 ..................................... ATGATTTCGAGTAACGATGGTTGTCCCACTC 2716993 37 100.0 33 ..................................... GCAATTTCGATTTCAATATCATTGGATGTCATT 2716923 37 100.0 34 ..................................... GTGAGCGATTACACGCCCATTTTTTATTATATCG 2716852 37 100.0 28 ..................................... GAACTGCAAACAGGTGGCAAATCCATTT 2716787 37 100.0 35 ..................................... AATCCGTCCGCCGTAAAGTGGGAAATTACTTTACC 2716715 37 100.0 34 ..................................... GTATTAGATTAAACCTTTACCGTTTATTTTAATA 2716644 37 100.0 34 ..................................... CCTCTTTAATTAATGGTATTAGAAAGCCATCCGT 2716573 37 100.0 33 ..................................... GTCGGCAGGGCCGAGAGCCTGGATTGTTGGGCG 2716503 37 100.0 31 ..................................... GCCACATTAACTTAAGCTTAAGGCTGAAATG 2716435 37 100.0 34 ..................................... TTCTTCCGGGGCCTCGTTGAGGTGGGCGAATGTT 2716364 37 100.0 35 ..................................... TGTAGTCGGGTTTGCTGGACAGGCGGAGTTGATGG 2716292 37 100.0 35 ..................................... TAAGGTTTCTTGCCAGTCTGTCCAAATTTCTTCAA 2716220 37 91.9 0 .............G.T.......T............. | ========== ====== ====== ====== ===================================== =================================== ================== 20 37 99.6 33 ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Left flank : CGCTTTTACATCAACGGCGGTTGGTTGGAACAACATGTATGGGGCATCTGCCTAAACCTGAAAAAAACTCTAGTATTGCAAGACGTGGGCCGAGGCATCGAGGTCGAACGCAACCACAGGAAGCCGCCTATCAGGAATGAAATGGATATCGCGCTGCTCAAGGACAACCGGCTATACATCATAGAATGCAAAACCCATCACGACAAAAATCCGGTCAACAACAAAAATACCCAGGCATTGTACAAACTCGATAGCCTCAAGGATCTATTGGGAGGGTTACAAGCCCGCGCAATGCTGGTAAGCTACAACCCGCCGAATAAATACGATCTGCAGCGAGCGCACGATCTCGGCATCGCCATTTGCGCGCATCGAAGTTTGGCGCATTTATCGCAAAAATTGACGGAATGGATCAGATGAAAGCAATTAACTTTTCAAAAGCCGAAAATCCCGCCAACCCCCTTTGCAACCCATTGATAACAAAAGGAGAACAGAGGCGAGCT # Right flank : TGCGGTTTTTTTGATTATTTTTATCGTTCCCACGCTCTGCGTGGGAATGCCTGAGTACCGTTCCAGCGGTACGAGACGCTAGAGCGTCTCGGTCTTCATTCCCACGCCGGAGCGTGGGAACGATAAGGGCTGTAAATAATTACTATTAAGAAGGGATTAAGACTTGGATCTCTGTTGATGTTTAGCACGGTTTTGCCTGAGTACCGCTCCAGCGTCTCGGGCTGCATTCCCACGCTGGAGCGTGGGAACGATAGGGGGATGTGAATAATTACGGCTCTTCCGGATTTCCCGTGGTAATTTGAAAGATTAGTGACAAAGCTAATTCTTAATGAATAAATTACATTTAATACCATCTGCTTAAAGAAAATCTTCTTTTTTTATTCGGTGTCGATCCGCTATTACCACGGCAAGTTCGGAAGAGCCATAATTACGAGCAATCTACATAGCAGCAATTCCCCATTTGAGAGTAAAAAAGGGTACGGAGTGCACTTTCATCGTTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 3135836-3131846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035467.1 Methylotuvimicrobium buryatense strain 5GB1C chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3135835 28 100.0 32 ............................ GCTTTGATTTCGTCAATGGCGGTTTGTTCGCT 3135775 28 100.0 32 ............................ ATGAGATACAGGAAAGAAAACATGGCGGGATT 3135715 28 100.0 32 ............................ AAGTCGATCTTGCTAGACCACGTTGTTGGGGC 3135655 28 100.0 32 ............................ ACTTTTTTGTTGCGATATTTACTCGACTTTGT 3135595 28 100.0 32 ............................ GCGCTCTTAGTGTGCGATATCGTGCTTATGCC 3135535 28 100.0 32 ............................ GCTTTATGTCGATTCATAATTCTTCCGGCATA 3135475 28 100.0 32 ............................ TCTTCAATCAATCGTCTTGCGTCAGACCACTG 3135415 28 100.0 32 ............................ ATTCTGTTTCGCTTTTCTTCTCACCGTTTTTA 3135355 28 100.0 32 ............................ GTTGTAGTCACGAAGCCGAACCAGCGTTGTTA 3135295 28 100.0 32 ............................ CAAAGCTAGTAATGTCTGAACCGCTGGACATT 3135235 28 100.0 32 ............................ TTTGATGTCGAGCAGCGACATCAGGCCGCGGA 3135175 28 100.0 32 ............................ AGGTCTTTAGCGGTATGCTCGGGCGGAGGCGG 3135115 28 100.0 32 ............................ GTAAGTAATTTCAAGCGCTCGAACCGTGCCGA 3135055 28 100.0 32 ............................ GATCCGACAATACCGGAATGCTCTTTGGGTGG 3134995 28 100.0 32 ............................ AAAATCGCACAGCGCGACACCGGACAAGCCGT 3134935 28 100.0 32 ............................ TCTTTTTATGGTTGCGCCTCTGATGGGTTAGC 3134875 28 100.0 32 ............................ AGTCCCGGAACGCCCAGCAGCCTGCTCCCGCA 3134815 28 100.0 32 ............................ GCTTTACAGTATGAACATTGTTGACCGTGACA 3134755 28 100.0 32 ............................ ATTAGTTAGCACGCTCTTGAGTCGGCAAACTA 3134695 28 100.0 32 ............................ AATCAAAAGCCGCGTTCGGTGAAAACTCGATC 3134635 28 100.0 32 ............................ TAACCCAACCCGCGAGATACCTATGCCTAAAG 3134575 28 100.0 32 ............................ CAGCGCTTCGCGGAAGAAAATTTAAATAATTT 3134515 28 100.0 32 ............................ GTATAACGACAAAAAACGCGGCATGAAGGTTG 3134455 28 100.0 32 ............................ GTTTATGAGCAACTCACCGTGCTTTGCTCTCC 3134395 28 100.0 32 ............................ ACCTAATAATCCAGATCCTGACCCTGGGCCTA 3134335 28 100.0 32 ............................ TATATTGTCGCGAGCCGCTGCCCGCTTCTCGT 3134275 28 100.0 32 ............................ GATCCTGACGACGGCTAACAATGCGATTGCTG 3134215 28 100.0 32 ............................ TTATCCGGCAAACCCTCGCACAACAGCGCAAA 3134155 28 100.0 32 ............................ ATTGGCGGCTAACGATTGGCTCGTGATTAGCG 3134095 28 100.0 32 ............................ AAATTGTTTATTTTGAGTCTAAAGATGTGTCG 3134035 28 100.0 32 ............................ TTGTGTTTTGCCACTTTGAGCAGGACCGACAA 3133975 28 100.0 32 ............................ AACAACACGAAGATAGGCAGCAGCACCAACAA 3133915 28 100.0 32 ............................ GGTGCCCCACGGCGTAGTCTCATCCTTTGGCA 3133855 28 100.0 32 ............................ AGACGGCTTGATTACGTCGACGGTATACCGTG 3133795 28 100.0 32 ............................ TAAATTAAATGCACCGGCGGTGATGCCAATCG 3133735 28 100.0 32 ............................ TATTCATATCAACGCCGCAAATACGCGGCATC 3133675 28 100.0 32 ............................ AGAAATCAACCGAGAATGCCAAGAATGCGCCC 3133615 28 100.0 32 ............................ GTTCTAAAGTCCTCATCCATCGCGAGTATTGG 3133555 28 100.0 32 ............................ GCAAACTATTTCAGTTGATCTACTCAACAATC 3133495 28 100.0 32 ............................ GTCAGGCAGGAATGGCGGAACAATAGTCGGTA 3133435 28 100.0 32 ............................ GTTATGATGTCCTCCGGAATGTTGAATGCTGG 3133375 28 100.0 32 ............................ AAGAGGCTCCGCCCGAAACGGCGGTGTTTTCG 3133315 28 100.0 32 ............................ CTATAACGCAATGCCCACTTGCTGCGCCCACA 3133255 28 100.0 32 ............................ TGAGTCGTGCGTCGATGCGTTTGTCGGGCATC 3133195 28 100.0 32 ............................ TTTGACATGCGGCAGCAGTTCGATAAATCCAA 3133135 28 100.0 32 ............................ GTTTCCTCCCAGCAACTACCCCGGCCAATAGC 3133075 28 100.0 32 ............................ CGTCTAGCATCGACACGCGGCCGGTCGGCGAC 3133015 28 100.0 32 ............................ CTTTCTTCATGTCAGCCCTTGAGAGGGCATTG 3132955 28 100.0 32 ............................ GTCGACCGTCGCGCAGCTGCGTCCAATGCGTT 3132895 28 100.0 32 ............................ TTGAACTTCAAACGGGGTGGCTTCTATTTGGA 3132835 28 100.0 32 ............................ GACACAGCGCAATGCATACGCCTCCTGGTCGC 3132775 28 100.0 33 ............................ CATTGTTTTATCAATTACCGGATGTTTCAGTTT 3132714 28 100.0 32 ............................ ATGGGGTAGAAGTTCTGCACGAGTTCGTAAAC 3132654 28 100.0 32 ............................ TTGGCCCTGGCATAGACGGCGTGGCGGTAATG 3132594 28 100.0 32 ............................ TTTTAAAATGACTTTATTGAGTCTAATTTTTG 3132534 28 100.0 32 ............................ GATGATTTCTTGCAAGTTAGAAAAGCCAAGCG 3132474 28 100.0 32 ............................ GTCAGACACATAGAAACCGCCATCTACCGCCG 3132414 28 100.0 32 ............................ TAGCCTCTTTATTTGCGGTATCAAGAAAACGG 3132354 28 100.0 33 ............................ CACGCGGAACCGTTTGAAGCGGGTAATCTTCGG 3132293 28 100.0 32 ............................ ACTGGTATTACAAAATTTACATGCCTAACCGT 3132233 28 100.0 32 ............................ TCTATGTGACGACAACGACCCTGACGTTCCGA 3132173 28 100.0 32 ............................ TCTTCTGACCTGGACTTGACCCAGGCTTTAGA 3132113 28 100.0 32 ............................ ACATCGACGGCGACATCACCGTGCACTACTCC 3132053 28 100.0 32 ............................ GGTATTAAATGCGCCGGCGGTGATGCCGACCG 3131993 28 100.0 32 ............................ GGAGGCTTTAGCGGTCTCGATATCGACCTGTT 3131933 28 100.0 32 ............................ ATTGATTCTATAGCCGAATATTTCATAATTCG 3131873 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 67 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGCTTATTAAGCAAACCTTACCGCTATGCGATCAATGCGGCTACTCACTTAACGCGGGATAGTTTAAGGTTAATCCGTTCGTGGTGAGCCTGTCGAACCATGAGCGGATTAACCTTCCCCCTTCGACAGGGCTATCCTGAGCGCAGCCGAAGGGCTTAGGGCGAACGGTTAATTCTTAGTGCTTTTGTCCCTCTTTAAGTGGGAAGCCATCAATGCTATCTGTTGGATAATTCCCGTGCGGACAACCCGTTTAAACAAGTTGCAATTGTTCGGAACGGGAAAGCCAATTTAAAGCTGAACTCAATTCCGGAATGGACAAAGGAGTTATTGGCGCATTAATTGCTTTATACTGAAAATTAAGCGATTAGACCCAAAAATTTTAGGTTCTTTAACAATATAGAAAAATCAAATAGTTATAAAGCAACGAAAAATAATGGTTAAAACGGTTATTTGCGGATAAGTAGCTGTTGCCATTATTTTTTTGCGCTTTATACTACA # Right flank : TGTGACTCAAAGAGCCGCAAAGTCCTAACTGGTTTACTCATAAGCGCCAACTTAGTGCCTATTCTGTGGTGTGTTTATGGCTTTATTCGTCATGTCGGTATGGGTGTCGATATCCAGGTTACATGGATGCTAAGCTACGCATTGCCATCCGTGGCACTGGATTCCGCCAATCCCTGGCGGAATGACACGTTCCTTCCTTAAGTTGGCGCTTATGACCAGTTTGCTTCCTTGCGCAGCCAAGTAAACGCTCTTTGGAGAATTGTCGAAAGAAGTCGATTCCACATAAAAAAATGGAAGAAAATAGTATGAATCTAGTTGAAATAAAATGATTTTTTTTAATCCTTTGGTAGAATACGCGCCGATCGTCTTTGCGCCGTTATCGTTTTAAGTTAGATAGGCCGTTTGCGTTTTAATACAGATTTATTTAAAGCGTTCGGTGTAATGATTGAGTGATTTCGCCGGGTGCTTAATTCGGCAATTTTGTAGATATCCTTTTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4574645-4571751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035467.1 Methylotuvimicrobium buryatense strain 5GB1C chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 4574644 29 93.1 87 .........G....G.............. CTCTTTAACAATCCGGAAATACCGAAAATAATCGGTAGAAATTTGCAGGTTGATTTTCTGTTTATCTAACAATCGGTTAAGATAAGT 4574528 29 100.0 32 ............................. TCATAGGGTCGGAACACCTACGGAGTACAAAG 4574467 29 100.0 32 ............................. GAAATTTAAACCCACCTATCCCACCCTCGACC 4574406 29 100.0 32 ............................. AAATGTTCGCGAGTTTCGTAATCTGGTATTCA 4574345 29 100.0 32 ............................. TTAATCCGGATGGTACAACTACAATCTCAGAA 4574284 29 100.0 32 ............................. TCGTCGAGATAGAAAAGCGCGTATTAACACCA 4574223 29 100.0 32 ............................. CTTGCTGAGTTAATAGGGGTAAAACCGGAAGA 4574162 29 100.0 32 ............................. ACTACTATTGCATAGAAGATGATTGCTTTGTA 4574101 29 96.6 32 ............................T GGTTGCCGATCAATTTATTCAATCGTTGAATC 4574040 29 100.0 32 ............................. TGATTGTCTGGATACGGGCTAATCGTCCTGAA 4573979 29 100.0 32 ............................. CCAAGGTGGAAAAATTGCAGATGCACAATGCT 4573918 29 100.0 32 ............................. TCTCATCGTGATCGCCTTCGAGATGATGCCAA 4573857 29 100.0 33 ............................. CACTGACACGATGGGGATTAAAACCGGTTTGTC 4573795 29 100.0 32 ............................. GCGAGGTTGATCTAGGTGAAATCGGCTTAATC 4573734 29 100.0 32 ............................. CATTCCTGGAGAGGAAGCGGAAGTCAGTAGAG 4573673 29 100.0 32 ............................. ATTAATTAAATCGGATAAACGCCGATTATCAG 4573612 29 100.0 32 ............................. CGTTAGTTTGATTTTATTTTAAAGCGGTGCTT 4573551 29 96.6 32 ............................C AGCTATCTCGACAACACCCCGCCCAAAGCCCG 4573490 29 100.0 33 ............................. TTCGGCGTAACTCACGCCACGGCGCCATGCCGC 4573428 29 100.0 32 ............................. ACTATTTTCAAAGTCTCTGGGATTCCTACTCC 4573367 29 100.0 32 ............................. ACCTGATTGCGATGTATTGGGCGGCATTGGAG 4573306 29 100.0 32 ............................. GTGTGGCTGTACATTTAGCAGTAGATTTTCAA 4573245 29 100.0 32 ............................. TCTTCAATTGACACCAACAATAGATTGTTAAA 4573184 29 100.0 32 ............................. GAATTCTCGATGCGATCGCGCTGATCCTCAAC 4573123 29 96.6 32 ............................T CTAGCTTTTGTGCTATCGCCTCATCCTCTGTT 4573062 29 100.0 32 ............................. CTCTCGGCCCTGCCGACTACAGCTTACCCGAC 4573001 29 100.0 32 ............................. TCAGCGCAAACAGCCCGCCGGAGCCTATCCGG 4572940 29 100.0 32 ............................. TGGCTATCGGTGCCATCACGACCGGCAAAAAA 4572879 29 100.0 32 ............................. ACCTGAATAAAAAATACCCGGCGACCGAGGAG 4572818 29 100.0 32 ............................. TCATTCTGGACGCGGTGGCCGGGCAGGTTGGC 4572757 29 100.0 32 ............................. CCGCCAGTTTTTTTGTTTTTGGGGTTGGTTTT 4572696 29 100.0 32 ............................. TTAAATTTGCTGCTCATGATTTCATCGAGCAA 4572635 29 100.0 32 ............................. CGATCCAGGACAAATCTATTTGAATGTTCATT 4572574 29 100.0 34 ............................. TAATACGATTCTTGCCCCGCTTTAAACGACATGC 4572511 29 100.0 32 ............................. TTTTCGACCACTCAGGCAATGGGGCTTCTCAA 4572450 29 100.0 32 ............................. TGATCGAGCAGGCGTTTAAAAATTTGGGCGTG 4572389 29 100.0 32 ............................. CGTGACCCCGTATTCTTTGTATTTCTGCTTTA 4572328 29 100.0 32 ............................. TTTACGAATCATTACCGACGGTTCACCAGATC 4572267 29 100.0 32 ............................. ACGAAACGATTCGATCTTTTCGGGGAAATGCA 4572206 29 100.0 32 ............................. TCTATCCCGGCGTTCAAGTGATGATCGGGACC 4572145 29 100.0 32 ............................. ATAACAATAAATGTAACATTACTATCCTTACT 4572084 29 100.0 32 ............................. AAAAAAAGCGCGGCGAACTTAAACCGCGCGAG 4572023 29 100.0 32 ............................. ACATCATCACGGTTGAGGGGATCGAGTGGAGC 4571962 29 100.0 32 ............................. CCGGGTGAACGCTATGTAATCGGTGCTGACGT 4571901 29 100.0 32 ............................. TTTCTTTATGCGTTTCAGTAAAATCAGGAATT 4571840 29 100.0 32 ............................. CTATTGCTGCACGTCAAAAACAATTAGCCGAA 4571779 28 79.3 0 .................T.TC...G-..A | A [4571757] ========== ====== ====== ====== ============================= ======================================================================================= ================== 47 29 99.2 33 GCGTTCCCCACACCCGTGGGGATGAACCG # Left flank : CGAAGAAAACATCGAGCCGGCGATACCGAACCCGGAAAACATCGGCGACGTAGGGCACCGAAGTTAGCGCTAAACCATTCGCAATTCGAATTTCGGAGCATTCGTGTCAAATCCCTCCCGGAAAGTGCCGGGATAAGGGATCAAAAAACGAAATTAGAAGCGCGATAACAATATTTACTCACCACTCATCGAATCATCATGTTAGTCATAGTCGTTGAAAATGTACCGCCGAGACTGCGAGGTCGTTTAGCCGTTTGGCTCATCGAAATCCGAGCAGGCGTTTATGTCGGCGACTTATCGGTCAAAGTCCGCGAAATGATTTGGCAGCAAATCGAGGCCGGCATCGAAGACGGCAACGCCGTGATGGTTTGGTCGACCAACACCGAGTCCGGTTTCGATTTCATGACGTTAGGCAAAAACCGGCGTCTGCCGGTCGAGCTAGACGGTCTGAAACTCGTGTCTTTTTATCCTCTTGAAGACGATGAAGCCAAAGCTCTTTA # Right flank : ACAGAATTGAGCCAGTTTTGGCCATTTAAATTGAGCCACTTTTCCAGGGTTACGATGCTTGATTTAGCTTTGATTTGAGTCGATAACTTTCCCCTCCTAGCATAAAAATGTGTGAATGATGGATGATGCGGTCGACGATGGGTACGGCAACGTTGTCATCGATAAAAAACTCGCCCCAGTTGGTGAATTCCTTGTTGGTGGTCAGGATCACCGAGCGGTATTCGTACAGCGCGTTGATGAGTTGAAACAGGTTGTGCATGCCTTGTTTGTTCATCGGCAGGTAACCCAGTTCGTCGATGATCAGTACATCGAATTTGAGCAGTTGGTTGATTTTCTTTTTCAACTCGCCTTTGAGTTCGGCCAGTTCCAAGGCCTCCATCAAGCCTAGCGCGGTGTTGAAGCTGACCTTATAACCGGCATCGATGGCTTTCAGGCCGATGCCGATGGCCAGGTGGGTCTTGCCGACCCCGGGCGGTCCGATGAAGACCACATTGTCCCGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4659790-4660243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035467.1 Methylotuvimicrobium buryatense strain 5GB1C chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 4659790 25 100.0 36 ......................... GTGCGCCATGGCGCACAAACTTTTTTGCACTTCCAT 4659851 25 96.0 35 .................T....... TTGTCCACAATTGTGGACAAACTCTTTTGCACCAT 4659911 25 100.0 37 ......................... AGGTGCATAAATCGCTTGAGTTGCCCATGGGCAACAA 4659973 25 76.0 32 A..A...CA.A..........A... GGGGGATTTCTTTGTCTACCATGGTAGACAAA T [4659978] 4660031 25 100.0 35 ......................... GTACAAAAGTCGCTAAATTCCCCCATGGGGGAAAA GG [4660033] 4660094 25 100.0 37 ......................... GGCTTGGGGGCCTATAGGCGCCAAAGAAATCCCAGAC 4660156 23 84.0 40 T.......--.........A..... GGTTTGTGCACTATAGTGCACAAAGAAATTCCCGAGACAC 4660219 25 76.0 0 ..............A.GT.CA...A | ========== ====== ====== ====== ========================= ======================================== ================== 8 25 91.5 36 CGACACCACGCGCGCGAGGGGTAAC # Left flank : CCGGCAACCAAGGCTATGTATTCACCACAAGGCCGGGCCGTCCATTATCAGAAAACACCGTAAACCAAGCCCTAAAGACATTGGGCTATGACGGCAAGACCATGACCGCGCACGGCTTTAGAAGTGTCGCTTCAACGATCCTGAACGAATTAGGATTCTCTCCCGATGCGATCGAGCGGCAGCTCTGCCATATGCCACGCGATAACGTGAGGGCCGCCTATAACCGGGCGCAATATCTACCGGAGCGGGTAAAGATGATGCAAGCGTGGGCAGATCATTTGGACGGATTAAGAAATGGAGCGGAGGTTATACCGTTTAAGAAGGTAAGCTAATAGGAAAGGTAGGTTTCTAAGTGCCGTAAGTGCCGTAACCGCCGTAAACCCAGTAACGGCGCGGCTTCACGGTACGGCACTTGTAAATTATAAGTGCCGTAATACGGCGGTTAAGTGCCGTAAGTGCCGGGGTATTTGGTAAGGTTGTCTCCAATTGGAGACAAACAT # Right flank : ATCCAAATCGCAGTGCGCTTTTGGGAACTTTTGATACAATCGACTTTAACCGGATAGGCCGACGGGCCAACAAGCGGGATTCGTTACCCCGTTTCCGGTTAATCCTTATTTGTTGGATTCAAAAGTGCAGTCGACTGCACTTTTGCGCTTTTCGTAACGGCACACTTGTAACGGAGTGTTATCAATGGATCATCCCTTTCTTTTCGCATTGCGTAACCGTACCATCAATTCGAATTTTCGAGATATTAAGACGGCGCTTTTAGATGATGCTGAGATTTCTAGGAACTTGGTTGAGCTATCAAAATCGTTTGATGAGGCGGTTCTTTTCGATCTTCTACATATTGCATCGATTCCCGCTAATGCTTTTCAAGTCAACCCAGAATCAAAGCCGATAAGATTAAACGAATTAGGTAGCGCGGCGGCTGAATTACAGAGGCAATTGAGCATGACCGACCCTAACTTGTTACAGCGTTATGCCGACAAAGCTACAAACTTTGGCA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGACACCACGCGCGCGAGGGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //