Array 1 2140070-2140939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002580.1 Burkholderia plantarii strain PG1 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2140070 28 100.0 32 ............................ TTGACCGTCTCGTCGTCCGGACGCATTGGTAA 2140130 28 100.0 33 ............................ GCCGCCATTCGACTGCCGGGCTACTCCTTTGCG 2140191 28 100.0 32 ............................ TGATCTGCATCTCCGTCGCCGCTTGCGCAGTA 2140251 28 100.0 32 ............................ ATCGGCCGTGCTTCAGGAACACGTGCGGCTTG 2140311 28 100.0 32 ............................ GCATCGCAACGACTTCACGGCGACGATCGAAT 2140371 28 100.0 32 ............................ CTGAGATTCGTGCCCGCAGTAGCGGGCGACGG 2140431 28 100.0 32 ............................ ATGATCTCTGCGGACTCGGCGTAGATGTGCGT 2140491 28 100.0 32 ............................ CTCGTCGTTCACGTAGTGCAGGATCACGGGCT 2140551 28 100.0 33 ............................ TGGGCGATCGCATCGCATGCCGCCGCACTTCAA 2140612 28 100.0 32 ............................ ATCCAGCGCTCGAACGCCGCCCGCTCGCACGC 2140672 28 100.0 32 ............................ GCTTGGGCAAAACCCTGTGACGCCGACGCAGA 2140732 28 96.4 32 .............C.............. ATCGTCCAATCTGTCGCGCAAAAGTACAACGT 2140792 28 100.0 32 ............................ TCGTGAGCCTGGACGACAAGCCGGGCACAAGA 2140852 28 100.0 32 ............................ TTCCGCCACGTCCGGCTCGGGCGCGTCGAATT 2140912 28 78.6 0 .............C......TGC.A.T. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTTGCTGCCGGATAGGCAGCTTAGAAA # Left flank : CGCAGCACTTCCGAAGCGGTTTTCACCAGCGTGCGGAACGCGGCCGCGTCGAGGGGCTTCGGATTCTTCTTGTCGCGACCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATCGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGTGCCGTCCAGCCGTTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGTTGTCGTCCCGGGCTGCGTCGGTGTCGGTGAGGTGGTCGGTCATGAGGCTTCGGCTTCGGTTCGGGGGCTTGGGTGGGCGCGTATTGTAAACGTTTCGATGGGCGGGAATGGGGCGGGGTGACGCGGGTGGTTGGGGTGGTGACCTGTGAACCCTTTTTTCGGCAGAATGCGCGAAGGGTTGGAAAATCAATGAGTTGGCGAGGGGTGGTGAATTTGGGGTGGCGGAGCGGAGTGATGGGAATTCGTTGTTGAATCAAGGAATTAGGGGATTTTTTGTCCA # Right flank : AACAAAAAGACAACCAGACACATCCGGAATCCCCCGTGTGAGGCGGATTAAGAATCAGACCTCGACGTTGAATCGCTCCCGGGTAAAGCAGTGCAAACTGCGTCGTCGGACGTTTCCATTCGTGCCGGGAGCCGGCCCATTTCGCAACGACGTTGCGCAGGGCCAACCCAATCAGTTTGAGCGGGGCCTGCCCGAACCTTTCCACGCTTTTTCAGGGGATCAACATGACTCGGCAACTTTCATGGGCTGACGCAACGGTGCGCGACGAACTGGCGGCACTGCAACGCGCACAACCATTCGTCTACGGCCTGACCAACTACATCGCGGCCAACCTCAGTGCAAACGTGCTGCTGGCCGTGGGGGCCGCACCCGCGATTGGCGCCGCGCTGGACTGGCCGACCTGCTTCGCTGCCGCCGCAGCCGGGATGTGGGTCAACGGTGCCGCGCTGATCAGCAGCGCACCGGATACGCTCGAGACGGCCGCCCGGTCGGCACACGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2151196-2152728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002580.1 Burkholderia plantarii strain PG1 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2151196 28 100.0 32 ............................ GGCTACGACATCGTGCTCAAGGTTCACGACGA 2151256 28 100.0 32 ............................ ACTTTCGAAGCGTGCGCCTGCTCGACGCTGGC 2151316 28 100.0 32 ............................ AGTCGTCGGTCTACGCGCTCGTCGCAGCCGGA 2151376 28 100.0 33 ............................ GTTTATCGATGGCAGCACCAGCGCCGAATCGTT 2151437 28 100.0 32 ............................ ACGAGATAAGCGAGGCCGGCCGCCGTGTAAAT 2151497 28 100.0 32 ............................ AATGAGCATCTCGCGGCCGCAGCTGGATTCTT 2151557 28 96.4 33 ............A............... ATCACCCGCGCGCCCATCGATACAACCGGGAAA 2151618 28 100.0 33 ............................ AGTGCAGTCGTCACGGCCAATCAGCATGTCGTC 2151679 28 100.0 32 ............................ CTCGCGACGTCGCGAACTTCTGCATGATGCTC 2151739 28 100.0 32 ............................ TTCGCCGTCTGAAGGGTTCCGTACTCAACCGC 2151799 28 100.0 32 ............................ TTCGATGCGTTGATGCACGGCATGCAGCCGAC 2151859 28 100.0 32 ............................ TTGGCGATCGGCCGCCGAAGTGTGAATGCGGC 2151919 28 100.0 33 ............................ CACGGGGCGATCTCGGTGTATCGCGCAGACGAC 2151980 28 100.0 32 ............................ AGCGTCTCGCCCAGGTCGGCGGCACTCGCCTT 2152040 28 100.0 32 ............................ ATTTGAGGCCCTAATTCTGGAAAAGCGATACC 2152100 28 100.0 32 ............................ TGTTGTGCGGCCGACGTGCAGCCGGCGATCGA 2152160 28 100.0 33 ............................ GTCGAGCGCGGCCGGCCTGGTCAACACCGTGAT 2152221 28 100.0 32 ............................ TGGATCTTCGAGAGCGTGCCGACCTGCTGCAC 2152281 28 100.0 32 ............................ AGCAGATCGTCGAGCGGATCGGTCCGGTGCGC 2152341 28 100.0 32 ............................ GATTTGCGCGCTGATCGAATCCGGGTTCCAGC 2152401 28 100.0 32 ............................ GTGGCCGGCGATACTGCTGCGTGCCCGGCATC 2152461 28 100.0 32 ............................ GCCCCATCAGCGGCGACAGCCTGAGCGGCGGG 2152521 28 100.0 32 ............................ ATCCGGTCGGGTGGGAGGAACTGTCGGCCCGC 2152581 28 100.0 32 ............................ TATGCGGAGCTGCAGTGCGCGAGCAACTTTTC 2152641 28 100.0 32 ............................ TTGTGGACGGCCCGCATCGCCGTGATGTCACG 2152701 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGGGTTTGCGCGAACTGATGGCGCAGCCATGGTTGCAGGGGATGCGCGATCACGTTGTGGTGGCCGAAGCCGCGCCGGTGCCGGCGGGGGCGACGCACCGGGTTGTGCGGCGGCGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCGGCGCATATTCCCGATAGCGTCGAGCGGCGGCCGGATCTGCCTTATGTGCAATTGCGCAGCACGAGCACTGGGCAGGGGTTTTGCCTGTTTGTTGAGCAGGGGAATGTGGGGCGGGAGGCGGTAGCGGGGGCGTTCAACAGTTACGGGTTGAGTCAGGGCGCGACGGTGCCGTGGTTTTAACCCTTTTCCGTGGCCGGAAAAGGAGGTTTTAAAAATCAATGGGTTAGCGAGGTGGCGAAAATTTGGGTGTTTCGCTTCATTGGCAGAATTTTGCTTTTGGAAACATGGGGTTGGGTGGTTGGGAGGGTA # Right flank : AATATCGAATGGCCGATTCCAAAAACTTGGATGATGGACGCCACCTGCACTGGCTGACCTACAGCACCGGCTACGTGCATAGCCTGCAGTTGGGCATGGCAAGGCTGGCTGCGTGAACAAACCCTAATGCGCGCCGGCATCGTCGAAGCTGAGCTTGCGCGCGATCGTGAGCCCGGCCGGCGAGCTGAAATCGAGCCGCACCAGCCACACGCCCGGCATTTCGAGCGCGAGGCGGGCGTGGTAGACGCCCGGGTCCGCGCCCGGCACGGCCGCTACCGGCGTCACGTTGTGCGCCATCGGCATCGACGGCATGTCGGCGCTCACCGTGAAGTGCGCGTCGCGCAGCGGCGCGCCGCCGGGCGCGGCGAGGCGAATCGTGCAGTCATAGGCGCCGTCGCCGCCCGCGCGCGAGCAGCCGATGCGTGCCGCGGGCGGCGCCGTGGCCGCATTCGCGAACAGCGGCGCGATCACGAGCGCAATCGCCACGATTGATTCGAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2474004-2473616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002580.1 Burkholderia plantarii strain PG1 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2474003 28 100.0 32 ............................ GTCGACGGTATCGAAGGTGAACGGATGCTTGT 2473943 28 100.0 32 ............................ GATACCAGTGGCCGGCGCACCGGATACCGCTT 2473883 28 100.0 32 ............................ AGATGCTGCCGTTGCGCAGTGTGAATTCTCGG 2473823 28 100.0 33 ............................ ACCAGGAAGCTGGACAATCCCTTGATTGACCAA 2473762 28 100.0 32 ............................ GTCTCCGGGCCGCCAATCCACCGCAACTCATT 2473702 28 100.0 32 ............................ GTTCGGCAATCTCACGCGCGGATTGACATCGG 2473642 27 85.7 0 ............AC..T......-.... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GCCAGCACCACGCTCGGACGATTGCGGTACGCGCCGGGCCGGCCGGGTTCCAGGTCGGGCCGGGCGGGCAGATATTTCGCATCGAAGCGCTCGCGCGACACCACCCAGCGGTCACCCGTCGAGCCCGTCACGAGCGCGTCGCCGGCCGCGTAGCGGTTCGGGCCTTCGAGGCTCATCAGTTCGCCCGCCTCGGGCGCGAATTCGACTTCCACCGTTTCATTCTTGACGACGCGTTGCGCGGCCGGGTCCGTGCGCAGGTCGATCTGCCTCAATTCGATCATGATTCGCGTGCTGGTCGGTGAAAAGCACGCACTGTAGCGTGAAATCTGGTGGCTGTGGGATGGTGCGAGGTGGCCGGGTTGCGCGATGAACCCTTTTTTCGGCAGAATCGCCGGAGCCTTGTGGATCAAGGGGTTGCGGCGAGATGGGAAATTTGGGCGGGAAGGGCGTCGGGTGGAGGAAGTCTTTTAAAATCAGTGGGCTGTGGGATTTGGTGGCTA # Right flank : AGCTGGACGCAGTCCAAAAAGGTCAGCGACGACACCCGCTTCCACCCCGACCACGCTACCTCTTTCCACAAAAAAGCCGACGCAAAAAAACCGGCCCACCGCGATATCGCGGTGGGCCGGGCCATCAGCGTCCCCGGGGCGAAGCCCCGGCTCAGCCGTCCTTACTGGGCAGCCGGCGCGGCCGGCTTCTTCATGGCGTGATGCGGTGCGCGCTTCGCGGCATTCGGGCCGTGATGCTCCCAGCGCTCGCCGAACGTCTTGTCGGCCAGTGCCTTCTGCTCCGGCGACAGCGCGTCGTAGAGCGGACTGAACGTGTCAACCAGCTTCTTCGCGCCATCCGCGTTCGCCTGGGCGATTTCGGCGTATTGCTTGACGTCGTCGACGGCGGTGGCCGTCTTCTTGTTTTCCATGCGCTCGCCATAGAGGCGGCCCATCGTTTCGCCGTTGTCGCGCATCGTGTCGGCGAACGGCTTCCACTGGGCTTCCTGCGCCGACGTGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //