Array 1 45057-43940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQWF01000075.1 Salmonella enterica subsp. enterica serovar Lille strain CRJJGF_00101 SQ0149Contig88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45056 29 96.6 32 ............................A GATTCGAGCGAATCCCCGTTCGAGTCCTGGCC 44995 29 100.0 21 ............................. ATNNNNNNNNNNNNNNNNNNN Deletion [44946] 44945 29 96.6 32 N............................ ATTTAATTAAATTTCAAGAGCAATTTGTAGAC 44884 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 44823 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGTATATACGGGG 44762 29 100.0 32 ............................. GGGGCATGCGTCGAGTGGTGAGGGGAAAAAAT 44701 29 100.0 32 ............................. CCGGAGAATATCCCGTCGCAAACCCAGCTTGT 44640 29 100.0 32 ............................. GAATCTGGCGGTCGTGTCTGGGGCCGGGATAA 44579 29 100.0 32 ............................. CAACAAATGAAATGAGGGAATATACTGACAAC 44518 29 100.0 32 ............................. TCAGTAGAATCGAATGCCAGGCGCCGAAAATC 44457 29 100.0 32 ............................. TTGAGCGCTCCTTTTTCTGATGCCATGCTCCA 44396 29 100.0 32 ............................. ATGTGCCCCTGTTCAATAATGGCCGCGTGAAG 44335 29 100.0 32 ............................. AACAAATCAAAATTGGCTATAGCCGTCTTATT 44274 29 100.0 32 ............................. CGGAATCACAGGGCAATCAGGTTACGTTCACG 44213 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 44152 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 44091 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGA 44030 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 43969 29 96.6 0 ............T................ | A [43942] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATTCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63053-61315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQWF01000075.1 Salmonella enterica subsp. enterica serovar Lille strain CRJJGF_00101 SQ0149Contig88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63052 29 100.0 32 ............................. CGTAATCAGAAGATGCAAAAAGCTGAAGCGGA 62991 29 100.0 32 ............................. CCGGACAGAAGACGTGGGAACAGAAATACGGT 62930 29 100.0 32 ............................. TTGAGCATGTTAACTCTTTGCTGGCTCTTACA 62869 29 100.0 32 ............................. AGTATAGCGGTTACTGCTGAGGCGTTGATCGA 62808 29 100.0 32 ............................. CCCAGGCGATAGCCCAAACGACACCCACTACA 62747 29 100.0 32 ............................. GTCGATTCAGAACAGTTCGTGAAATTATTTAC 62686 29 100.0 32 ............................. CAGGGCGCAGAACCTCGCCATTGTGACGGTGA 62625 29 100.0 32 ............................. GGCCACAACTGGTGCGCCGTTGTTGAGGCGTC 62564 29 100.0 32 ............................. AAGAGGAAACGGCAGGCGCTCTCAGCGAGGAT 62503 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 62442 29 100.0 32 ............................. CTGTTTAGTAGCGAGACAGTCAAACGGGAGTA 62381 29 100.0 32 ............................. GCGCGGCCCTCAAACCCACAACATACGACGAC 62320 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 62259 29 100.0 32 ............................. CTGGTGGCGCTGGCACTGTTTCCAGTTTGGCT 62198 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 62137 29 100.0 32 ............................. ATCAGGACGCTTTCCCGCTGTTTTAAAAACGC 62076 29 100.0 32 ............................. CAACGGAAATTTGTGTCAGATATTGCCGGGAA 62015 29 100.0 32 ............................. CGCTACCTCGTAATCTTCAGGGCTTTCTGTTC 61954 29 96.6 32 ............................T CAAACTGAGCGGTTTCCGGCATCATAATGTGG 61893 29 100.0 32 ............................. AGATCAACGAGGCGATATCAGCATTCACCGCC 61832 29 100.0 33 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATGC 61770 29 100.0 32 ............................. ACGGCGAATTTTTTGCGCGGATCATTTACGGC 61709 29 100.0 32 ............................. AGGTGCCGTTCGTTATTAGACTCTATCCGAAC 61648 29 100.0 33 ............................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 61586 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 61525 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 61464 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 61403 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 61342 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //