Array 1 811-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACN01000013.1 Schleiferilactobacillus malefermentans DSM 5705 = KCTC 3548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 810 33 100.0 35 ................................. AGTAATTGACCCAACTGTTTGTACACCTGCTCCAA 742 33 100.0 36 ................................. ATCTGTGTAACAGCTAGGATACCCAACGCATCTAGC 673 33 100.0 36 ................................. CTGATGATACTGTTGTTTTAATGCCAGACGGTGCAA 604 33 100.0 34 ................................. TAAAGACTTCCTCAACGTGATTGGTAAAGTCGGT 537 33 100.0 34 ................................. ATGACAAACGAACCAGTTAATCCAGAAGTAGACC 470 33 100.0 33 ................................. AATCAGTAACAACCTAATGAGTCAGTTGTACAA 404 33 100.0 33 ................................. AATCCGTTTGGCAGGCTATTGATACAGCGGTGA 338 33 100.0 33 ................................. AGGACAGGAAATGCTATTTCAGGAGTTGACGAC 272 33 100.0 34 ................................. AAAAGTCATTCAAAAGTGTTAATGCTGTCACCAA 205 33 100.0 36 ................................. TCATGAATCAGGCTGGAATCCTAAAGCTACCAACTC 136 33 100.0 35 ................................. ACAACTTCCAACGACTGGAAATCAAGAAGGATATT 68 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 100.0 35 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : TTCTCTACGGCACCGAATACGGTAGCAAATTATTTCCGTGTTATTGACTCAGAAACCACAAACGTTATCGTTCAATATAACACTGAAAGTATTCGTCTAGTTAGTGAGTTAATTTCAGAAAAAAGTAAATTTGAGAACATTTCAAAACTATTAAAGAAGGCTCAACCATATTGTGTTTCAGTATTTGGTGATCCAAATAATTCTAGAAGTGCGCTTGGTCAATTGCTGAGTACAGGCGATGTGCAATTTTATCCAGAGCAGGGTATATATGTAGCAGCTGATAACGCCTACAGTAAAGATTTAGGATTAGTGGGAACTGGAAATTTTGATTATTTAGACTATTAGTGCGAATACGAAGTACACATACTTTCTTTGGCTAATTCGCACCATAAAATTCAATAATTTTGATCAATTTTCTTAAAAGCTACTCTTTGTTTCATATGTTTCTGTACCGCCGCATATATGTAGTGTTTTATAGACGTATAGCACTATATATTGCG # Right flank : TAACTGATATGAATACTGTTTTAACTGATGGGTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9777-8998 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACN01000012.1 Schleiferilactobacillus malefermentans DSM 5705 = KCTC 3548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 9776 33 100.0 34 ................................. AAAGTATTTGATACCGTTGGGGTTTACCATTTCT 9709 33 100.0 35 ................................. GACCACTTCTTCTTAAACGATACGACCGCATTCCC 9641 33 97.0 36 ..T.............................. AATATCAAATTCAGCAACTGAACTATGACCCGGCGT 9572 33 100.0 35 ................................. GGTAATTTATTCATCAAGTTATTGCTTTTATCTAC 9504 33 100.0 35 ................................. TAGATTAATTGATATAGTAATTGGATTACCTGAAT 9436 33 100.0 36 ................................. ATCAAGTAATTAAGCAACAAAAAACTAACCCTATCA 9367 33 100.0 34 ................................. GCAAAACCTTAGCCCAGAAAACGGCTGGCGGCGG 9300 33 100.0 34 ................................. GTGTCACCTGTGTACTTACTGTCACCGCTAAACT 9233 33 100.0 34 ................................. CTACTGCCTGCGTTAGGGTTGCTGCCGTATAACC 9166 33 100.0 34 ................................. CTGACTAGTTCCACTCAATTCTGGAATCGCCCGT 9099 33 100.0 35 ................................. ATCTTGTGGTCTTGCATATCTTGAGTTGCATTGGA 9031 33 100.0 0 ................................. | T [9017] ========== ====== ====== ====== ================================= ==================================== ================== 12 33 99.8 35 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : CCAATTACCAACAACTGGAAATCAGGAAGGGTAC # Right flank : AATTCAATTCGGTAAGTTGAATGCGGCTTAAAATTGTCACACTCTGTATGATAACTGCACTTGCATATTCAAATATATATATCACACTCTAATCTAAATCAGTATAATTCATCAAAGACTATTCCTACTGGTTTATATATTCTTGGCATATCGTAATGAAAACGTTTACACCGATGCATCTACTTGCTACTATTGAACTAACTACTAAGACAGTGAGATGATTCTCAATGGAATATAATGAAGACGATTTTCTAATGATTTCGGGAATCCAACATTTTCGTTTTTGCTCCCGCCAATGGGCTCTTATTCATATTGAGCAGGCGTGGAAGGATAACTTACTGACTTTTGATGGTCAAACTTTGCATACAAAAGCTGATCAACCACAAATTCGTGAAAAAAGAAAAGATAAGCTAATTGTTAGATCTCTTCCAGTTCATTCTAGGGAACTTGGACTTACTGGTATTTGTGATGTTGTTGAGTTCACAGAATCAAAATCTGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-339 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACN01000147.1 Schleiferilactobacillus malefermentans DSM 5705 = KCTC 3548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38 33 100.0 33 ................................. ATATAATCCATCACTTGCTAGATGAATTATACG 104 33 100.0 33 ................................. AGGCTACCAAGTCTAAACATTATCGTTATGGCC 170 33 100.0 36 ................................. AATTAATGTTGGGGCTTCAGTTATTGAAGGGCAGAC 239 33 100.0 35 ................................. TAGGAGGCTTTAAGGAGTTGACAGACTCACTAGAC 307 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 100.0 34 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : AAAGAAATTACAGATGTGTTCAATTGGCTTAATAATGG # Right flank : TCATACCCTTGACGATTACGAGGAATTGCTTGTGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //