Array 1 1983908-1986071 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009450.1 Pluralibacter gergoviae strain FB2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1983908 29 100.0 32 ............................. TGGGAGGCTGAGTGATGCGAATAGTTAATAAC 1983969 29 100.0 32 ............................. CCTCTCGCGGAAAAGGTTGATGCGCTGCAGGC 1984030 29 100.0 32 ............................. CGCAGTTTGACCTCTTCGACTTGGTCACTTTG 1984091 29 100.0 32 ............................. GCTGTCAACTCAGTGGCAACCGGAAAGGGCGA 1984152 29 100.0 32 ............................. GTGATAGTGGATCATCGTTCTGGCGACGGCAG 1984213 29 100.0 32 ............................. TGGGGTCAGTGCAAACTGGTCTACTCCAACGA 1984274 29 100.0 32 ............................. ATGGCTGAAAAATATGAAGTCCATGCGTTTAA 1984335 29 100.0 32 ............................. GTGACAAAAGAGGCGCATTGTATTTTTGTGTA 1984396 29 100.0 32 ............................. CGGCGATCGTGGTCACCAGTCGCGCGGACGAA 1984457 29 100.0 32 ............................. AACGACGTCATCATCGAGATGATGGAAAACGC 1984518 29 100.0 32 ............................. CTGAGCGGACGATGATTGCTCCGACGAGCCCG 1984579 29 100.0 32 ............................. ATAGAGTTTCTTTTCGCTAAACTTGATCTCTG 1984640 29 100.0 32 ............................. GCATGGAGCAAATCTGATTTAGATTTAATCCA 1984701 29 100.0 32 ............................. AGGGCGGAGTCTCTGGCGGTGCGTCTATTACC 1984762 29 100.0 32 ............................. GCGGATGCCGCATGGAAGAAGATAATCGCCCG 1984823 29 100.0 33 ............................. CCCGCTATCCAGCTCCATGACAAACGAGTTAGC 1984885 29 100.0 32 ............................. ATGATTGCCCTAATCGAATCCCACTCAGTGAT 1984946 29 100.0 32 ............................. GGTGCCGCCTGCAGCCGTATCAGTGCAGCGCC 1985007 29 100.0 32 ............................. TTATAACCGTTGGCCTTGGCCGCCTCGTAATC 1985068 29 100.0 32 ............................. CCCCAGTCCTGTAACGACAGGCTGGCGAAGAA 1985129 29 100.0 32 ............................. AATATCCACATCATCACGAGTTCGCGTGATGT 1985190 29 100.0 32 ............................. ATGCCATCTTTGTTTGCCTGCTTAATTCCGGC 1985251 29 100.0 32 ............................. AGATCAATCCTTGAGGATCATATCAGTGATCT 1985312 29 100.0 31 ............................. CGATACCGATATTCATTCGATGTTGACTGGA 1985372 29 100.0 32 ............................. TACGGCGGCGATATCGACGGTCTGCGTATGCG 1985433 29 100.0 32 ............................. GCTGATTCAGTCGCCGGCCGTATTGCTTCTTC 1985494 29 96.6 32 ..........T.................. GCACCCACTATCAAGATACCGGCGGCCAAAAA 1985555 29 100.0 32 ............................. TTCTTACAGGGGCTGAAAGATGATGCGCAACT 1985616 29 100.0 32 ............................. CGCAATCATCAGTAAGTCGTTTGATGGCCTCC 1985677 29 100.0 32 ............................. TACGTCTCTCCGGACCCGTCCCCAGCACCACC 1985738 29 100.0 32 ............................. ATTTCTCCCCGGCCAGCCAGGACGCGGTTGCA 1985799 29 100.0 32 ............................. TTTCTCGGCATGTCGCCGAAAATGGGCAGCGT 1985860 29 96.6 32 ....................A........ AAAAAACGTCATCAACGAATGACTATGCGCTC 1985921 29 100.0 32 ............................. AATGGCAGACGCAACATGCCGATATAATTGGC 1985982 29 96.6 32 ........T.................... CTGCCACGGTAGAAGCGGTGCCAGCTATACCT 1986043 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGAGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACAGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACTTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : GACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCATGCCGCAATAGCTGACAATGCTCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTCTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4300803-4300595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009450.1 Pluralibacter gergoviae strain FB2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4300802 28 100.0 32 ............................ TGGTATTCATCCATTTCGGCCAGTTGCCACAT 4300742 28 100.0 32 ............................ ACCGAGCTTCGTGACGTGAAAGCACAGCACAC 4300682 28 92.9 32 ...........T.G.............. AGTTACAGCCGGGAAATGTTTACATCGAAGTT 4300622 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGTGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGAGGCGCCAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACCTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGCAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : ATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGTTCGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4303174-4302486 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009450.1 Pluralibacter gergoviae strain FB2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4303173 28 96.4 32 ..T......................... TCGATAATTTCCGGGTTGGTCTGCCAGCATTT 4303113 28 96.4 32 ..T......................... ACGGAGAAAGTCGCATCCTGCGCCAGCACGTT 4303053 28 96.4 32 ..T......................... CCGATATGTGACGGCACCTGGCCGCGATAAAA 4302993 28 100.0 32 ............................ CGAGACATTGCACCCAACGGATTTCTGATTGC 4302933 28 100.0 32 ............................ GTAGATGTTCGGCCGGCCTTTATAGAGCCTGG 4302873 28 100.0 32 ............................ AGTCGTATTTCCCAGGGGGCTGGGTGATCAGC 4302813 28 100.0 32 ............................ AGTCGTATTTCCCAGGGGTCTGGGTGATCAGC 4302753 28 100.0 32 ............................ TTCTTGTTGTAGCGGACGATGCCATTTGGGAA 4302693 28 100.0 32 ............................ ATGGACTGGCGTGATCACTCCGCATGAGATGG 4302633 28 100.0 32 ............................ AGTACATGCACTCGCGGTAGTCGAAGGAAACC 4302573 28 100.0 32 ............................ TGAATGTGGGCGTCCGACTCAAGCCACAGATC 4302513 28 82.1 0 .....................CCCA..C | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTCGGCAAGCTCGTAGACGGCGGCCAGGTGACGGTCGACCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAGAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAATGAATAGAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGAATGCGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTTTTTTTTCTGTTTTAAAACAGTGTGATAGAGTGTTCGATGATCA # Right flank : TCCAGGCATAAAAAAGCCGGGAATTGACCCGGCTTAAGTATTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGAGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //