Array 1 11515-9851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCW01000004.1 Salmonella enterica strain BCW_2480 NODE_4_length_462394_cov_2.09096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11514 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 11453 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 11392 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 11331 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 11264 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 11203 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 11142 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 11081 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 11020 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 10959 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 10898 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 10837 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 10776 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 10715 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 10654 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 10593 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 10532 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10471 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10410 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10307 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10246 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10185 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10124 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10063 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10002 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9941 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9880 29 96.6 0 A............................ | A [9853] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28898-27772 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCW01000004.1 Salmonella enterica strain BCW_2480 NODE_4_length_462394_cov_2.09096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28897 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 28836 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 28775 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 28714 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 28653 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 28592 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 28531 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 28470 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 28409 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 28348 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 28287 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 28226 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 28165 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 28104 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 28043 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 27982 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 27921 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 27860 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 27799 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //