Array 1 47035-47410 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL638151.1 Selenomonas artemidis F0399 Scfld170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 47035 33 90.9 5 ....................T..........NN NNNNN Deletion [47073] 47073 33 90.9 34 NNN.............................. TCCATCGCGTAGGAGCCGATGGTATACGGAACAA 47140 33 100.0 33 ................................. TCACTAGGGAGAAGATCGATTGCCGGATACCTG 47206 33 100.0 34 ................................. GATGAAAGGAGGTGTATCGCATGGGACGAAACGC 47273 33 84.8 4 ............................NNNNN NNNN Deletion [47310] 47310 33 93.9 35 N...................T............ ATCCGTACTCTACACGGCAGGAGATCTGCTGCACA 47378 33 97.0 0 ....................T............ | ========== ====== ====== ====== ================================= =================================== ================== 7 33 93.9 24 GTCGCGCCGCGCATGCGGCGCGTGGATTGAAAC # Left flank : CTACGTTTTGTCTACGATTCCCATGATCCGCCCCTATTAACTTCTATACCCCAGTGTCGGGAAAAGTTACTTGGATTTTTACGAAATCCCTACAGTCTGTAGCGATTCTCTGCTCTGCTATGCACTTGCAGTCCCTACTATTCGTGTCATAGGCAGATTGAAACCAAGTCGTGGTCAACGACTTACAGCATCGCAAATGTCGCGCCGCGCATGCGGCGCGGGGGTTGAAACAAGCCCCGCAATCGCCGCGCGTATCGCCTCCCGCGTCGCGCCGCGCATGCGGCGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGCGGGGCGCGCTTGCGCCTGCGGCGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGTGGATTGAAACAATGATTTAGATATGGAGGATCCAAATGAGTAGA # Right flank : CCATCTGCAGGTTGGGGCGTTATTTGCTTCGCACGGTCGCGCGCCGACGAGTGCGTGGATTGGCACTTGTAGATTTGTCTACGATTTGCCTACAAAATCTTGCTTCACTTGACACAGTCGCGCAGATTAAAATTCATGAGAACTTTTCAATTGATTTTGAAAATTTTATGGGAATAGCAATTGAAACACTTGTACCTTTGTGTTATGTATGATATACTATCGTCATATCCAAGATGAGGGCGCTTGTTTTTTGAGGCGGCGACGTTGCAACTTGTGTTGAATCGCGTGGATTGAAACATTGCCGATCCGTTGAGACCAAGAGCGAGAGTGTATCGTGTCGCCCTAACAACAGCATGGATTCAAACGATATTATAGAAACGACATTATTATAGGCAACAAGAACCGGAGTGTGGTAAGATTTGCTTCACGATATTCAAATCGGCAGATATTTACCGGGGGATTCGTTCCTGCACCGCATGGATGCGCGTGTAAAAATCCTC # Questionable array : NO Score: 7.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-0.93, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCGCGCATGCGGCGCGTGGATTGAAAC # Alternate repeat : TCGCGCCGCGCATGCGGCGCGTGGATTGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCGCGCATGCGGCGTGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 61238-61469 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL638151.1 Selenomonas artemidis F0399 Scfld170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 61238 33 100.0 34 ................................. AAGGACGTACCGCCGCAGGAACGTCTCATGCCCG 61305 33 100.0 32 ................................. GCTCGAAGAGTACGAGAAAATCGTCATGCGTC 61370 33 97.0 34 .....C........................... TCGATCGTTGCGACGTTTGTGGTGTTGCGTGCTA 61437 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 99.2 34 GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAC # Left flank : TATCCGCCGTTCCTATGGAAGTAGGAGGGGGATGTCATGTATGTTCTGATTACCTACGATATCAAAACTATCAATGTCGAAGGGCGGCGACGCCTGCGGCAGGTTGCGCGGAAATGCCGCGCATATGGACAGCGTGTGCAGAACTCTGTCTTTGAGTGCAAAGTCGACCCAACGCAGTGCAAACAGTTGGAGCTCGCCCTGCTTGACATCATAGACCTGCAGGAAGACAGCCTTCGGTTTTATTTTCTCGGGAAGGATAAAGGGCCGAAGGTGAAACATTACGGAACCAAAGAGTCTTACGACTTGGAGGCGGCCGTCATCATCTGAGCGGTTCTTTATGAGCGCGAAGGTGAAGTGAACAGAAAATCGCATGATAAAATATAGGTGGAAGAACCGTGCCAAAGGAGGGGCGTGGGACGAACCGCCGAGAAAAATCGTATTTGTGGCGAGTAACACCCATAAATACGTGGCAAAATGTTCCCTTTGTGGGACCGTTTGCC # Right flank : CATTCGGAGTCTTGATGATGTCTGCCGTGATTACGGGTCGCACCCCGCGAGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGCGTGGATTGAAACTTGCGAAAGCCCCATACCCGGATCCGCGAAAAACGAGGTCGCACCCCGCGAGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGCGTGGATTGAAACGCTTTCCACGTCAGCTGCAGAACGCTGCTGTTGCGTCGCACCCCGCGAGGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 61897-62340 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL638151.1 Selenomonas artemidis F0399 Scfld170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================= ================== 61897 33 93.9 45 ...............................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 61975 33 57.6 34 NNNNNNNNNNNNNN................... TTCGATTGTCTCCTGCATGTGCTGTAAATTCCCC 62042 33 100.0 34 ................................. ATTTTCGGTATTTGTCAATCCAAAGGTCGTTAGA 62109 33 87.9 34 .....G......AC....C.............. TACGATGCCGCCCAGCGGAACCTTGCTCGACACG 62176 33 90.9 33 ..........T..C...............C... GCCGACATACGTGACAACAAGGAATTTGAAGGA 62243 32 84.8 33 .....G....A..-....CA............. CTGCCACTCTTTGCGCGCTTATTGGCGATGATT 62308 33 72.7 0 ....T..T..T.....CAC...C..G......T | ========== ====== ====== ====== ================================= ============================================= ================== 7 33 84.0 36 GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAC # Left flank : TGAAACTCGATCGTTGCGACGTTTGTGGTGTTGCGTGCTAGTCGCACCCCGCGAGGGGTGCGTGGATTGAAACATTCGGAGTCTTGATGATGTCTGCCGTGATTACGGGTCGCACCCCGCGAGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGCGTGGATTGAAACTTGCGAAAGCCCCATACCCGGATCCGCGAAAAACGAGGTCGCACCCCGCGAGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGCGTGGATTGAAACGCTTTCCACGTCAGCTGCAGAACGCTGCTGTTGC # Right flank : TGCCGAACAGCTCTACAAAGTCTATGTCATGTTCATCGCGCTCGCTCCAGGTGGATGTGCGGATTTGATCTTGCCTCCGTGTTCGTGGACAAGATCAAAACATTCAAATCGATCGATATTTTCCAGGGGCTTTAGAGATTCTGCATTGCATGGATACTTGTATGAAAAGCCTTTTGTTGATCGGCTTTTTGTTGCTTAATTTCTTTATGGAAAATTCTGCGATGCGGCGTTGCTGCCAAGGTGGCGATGGGGAGCGGACGAAGGAGATGCGTGCGGATGCTTTGACTATGCGGATCCCTACTGCGTGATCTTGGGACGGAGCCACTGATCTCAATGCGACTCCTGTTACAGCCTGAGGATATGCGCACAGGAAATCAATAGCTCGTTGCCGATACCTCTGTTTTGTTTATAGGCCACACATCACTGGGCTCGTGTGAGTACCTGCTCTGTCTTGCCTTTGCGGTGCATGCGGAGGTTCAGACAATTTATCGGACTTTTAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.20, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //