Array 1 226533-222841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYR010000007.1 Salmonella enterica subsp. enterica serovar Muenster strain S136 NODE_7_length_243076_cov_313.220322, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226532 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 226471 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 226410 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 226349 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 226288 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 226227 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 226166 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 226105 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 226044 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 225983 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 225921 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 225860 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 225799 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 225738 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 225677 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 225616 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 225555 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 225494 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 225433 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 225372 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 225311 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 225250 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 225188 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 225127 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 225066 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 225005 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 224944 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 224883 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 224822 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 224761 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 224700 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 224639 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 224578 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 224516 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 224455 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 224394 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 224333 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 224272 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 224211 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 224150 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 224089 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 224028 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 223967 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 223906 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 223845 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 223784 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 223723 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 223661 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 223600 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 223539 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 223478 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 223417 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 223356 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 223295 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 223234 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 223173 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 223112 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 223051 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 222990 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 222929 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 222868 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192588-194262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYR010000009.1 Salmonella enterica subsp. enterica serovar Muenster strain S136 NODE_9_length_194432_cov_309.685416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192588 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 192649 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 192710 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 192771 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 192832 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 192893 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 192954 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 193015 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 193076 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 193137 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 193198 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 193259 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 193320 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 193381 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 193442 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 193503 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 193564 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 193625 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 193686 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 193747 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 193808 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 193869 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 193930 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 193991 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 194052 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 194113 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 194174 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 194235 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCACCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //