Array 1 952302-948011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023516.1 Pasteurella multocida strain FDAARGOS_384 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 952301 28 100.0 32 ............................ TTGGGCAAGAATGAAAAGGCGTTATATTTTGA 952241 28 100.0 32 ............................ TCATAATTTATGCAACAAAACGCAAGTTGCTT 952181 28 100.0 32 ............................ TTTCATGATTGTGATCTTAATCATACTTTTTG 952121 28 100.0 33 ............................ ATTTATAAGACCTTCCATAGCCCTACCCTCATT 952060 28 100.0 32 ............................ ACAAGTTCATCACTTTGACCTTCTAAATAATC 952000 28 100.0 32 ............................ AGACTGGATTGATACAGCAACAAACGATTTCG 951940 28 100.0 32 ............................ TAGGCAATGCGCTTGTTGTAGAGGATGTCGCA 951880 28 100.0 32 ............................ ATTTTTTACAAGCTCACCAGAAATGCGCCAAT 951820 28 100.0 32 ............................ ATTCTCTTCTAAAATATCTAAATGATATTCCG 951760 28 100.0 32 ............................ TCTTGTTTTTTCAATCTGATCGTTTTGTCAGT 951700 28 100.0 32 ............................ TTTTATTGAGGTGAAAAGAGGGGTATAGGATT 951640 28 100.0 32 ............................ TTTTTGCTCTAATAGCATTTCTCCATGTGTTG 951580 28 100.0 32 ............................ ACTATTTGAAGAACCATTAGAATTACCAGAAC 951520 28 100.0 32 ............................ AATGTTATTAATGATTTCTTTAAATTTTATAA 951460 28 100.0 32 ............................ AACGGAAAAAACTTGTGGTTGTTGTGGCTGTT 951400 28 100.0 32 ............................ ATGAGAAAAAACGTAGAGAAAGAGCTAAAACT 951340 28 100.0 32 ............................ GGTAAAGAAAATGCTAAGCCATTTCCGGTGTT 951280 28 100.0 32 ............................ TTACTTATGCACACATCAAGCTGCGTATAGCA 951220 28 100.0 32 ............................ AGTTGCATTTCAAAAAATAAACGAACAACCTT 951160 28 100.0 32 ............................ TAAACGCTTTGTATTGCCAGCAAAATCTAGCA 951100 28 100.0 32 ............................ ATCATGATGGATGTTAACGGTGAGAGAAGTGC 951040 28 100.0 32 ............................ GTTAAAGGCAATCATAATACGATCTAATGCCA 950980 28 100.0 32 ............................ GTGCTAGACATTGGCACAGTCGTGATTCTGCC 950920 28 100.0 33 ............................ CATACAAGCCATGTCATCAAGACGTTGTCTTGT 950859 28 100.0 32 ............................ GAGTAAGCAACAGCAAATTATTAAAAAAGATT 950799 28 100.0 32 ............................ TTTTTGGATAGACAAATTAATGTTGCGCAGAT 950739 28 100.0 32 ............................ ATTCTTCCAAACCGCGCAAACGGCACATCATT 950679 28 100.0 32 ............................ TTCATCGTTTCACGCAACCCACAGTAGCGGAG 950619 28 100.0 32 ............................ ATTTTGTCACTTTTCCAGTTATTGCCGTTACT 950559 28 100.0 32 ............................ AAATTGCATTACGAAAATTAAGGTAGTCTTGA 950499 28 100.0 32 ............................ AATTCAAAATAATCACGTTCTGAATTGTCGCC 950439 28 100.0 32 ............................ AGAGCATTTACGCAACATGGCCCTTTTCAAAG 950379 28 100.0 32 ............................ GCCGAATTGTTTCGCATAAGCGCGAAAACCTT 950319 28 100.0 32 ............................ TTTTTGTTTTAGAACAAACCTCACAAAACACT 950259 28 100.0 32 ............................ GTTTTCTTCTAAGATTTCTAAATTATATTCTG 950199 28 100.0 32 ............................ TGTATGCAAAAGTCTTGAATTAAAATCTTGTT 950139 28 100.0 32 ............................ GTTTATCAAAACAGTTAGTTGAAACAGACGAT 950079 28 100.0 32 ............................ TTTAATCCCACTTACACCACTATGACCATTAT 950019 28 100.0 32 ............................ TAACTTTTTAAGATGTTTGTTATCAATTAGAT 949959 28 100.0 32 ............................ ATCTAGTCGTGATGCGTTTCTAAATTCAGAAA 949899 28 100.0 32 ............................ ATTTTATTTCCGCCTTCATCTTCATCATCCAT 949839 28 100.0 32 ............................ AAACAGCAAGAAATCAAATGCTGATAACAGCT 949779 28 100.0 32 ............................ ATTGTTTGACTTACTTTATCAACTGTTCCTGA 949719 28 100.0 32 ............................ ACAATTCCTGAAACAGTATCTGCGTTGAACAT 949659 28 100.0 32 ............................ ATAGTCTTTTAATGCCCTTGAAGAACGAACAT 949599 28 100.0 32 ............................ ACTAGCACGCATGGCTTATGAATTTGAAACAG 949539 28 100.0 32 ............................ AGAGTGGCTCTGCGAATTCATGCCAAGCACAA 949479 28 100.0 32 ............................ GTTGATTGAGCCGCCGAATTTTTTAATTAATT 949419 28 100.0 32 ............................ TTTCTGGGGGCTTTGTCTTTGTTAAAGGGGAA 949359 28 100.0 32 ............................ AACCTTGTTTTTTAGATTGATAAATAATTCCT 949299 28 100.0 32 ............................ TTAATTTAATTGTTTAAATATTTGTTCGCTTT 949239 28 100.0 32 ............................ ACCTCGTCTTGTTCTAGCCATTTCTCGACTTC 949179 28 100.0 32 ............................ ATGTAATCTGCTAGTTGTTGTCTCATTTTTTT 949119 28 100.0 32 ............................ TTTTTAGTTTTTTAAATTTAAGGGTTTCCCCT 949059 28 100.0 32 ............................ AACATATAAGCCAATCAAATTAACATCTGATG 948999 28 100.0 32 ............................ ATCCATTGCTGTGTGTGTGCCGAGTTTCATAA 948939 28 100.0 32 ............................ ACAAAGCCCAAGAAAAAAGGCTATTGTGACTA 948879 28 100.0 32 ............................ TGGTTCTTTTGTTTTCGCCTCACGGTGCTAAT 948819 28 100.0 32 ............................ CAAGCGTGGCAACATCCCCGTAATGTCACCAT 948759 28 100.0 32 ............................ TGGTGTGCGACTTCTTGCCGCATTAACCAAAA 948699 28 100.0 32 ............................ AGATTTCACCACCGATTAAATGCGCCGAATAT 948639 28 100.0 32 ............................ GTGTAGTAAGTTACAAATTCCCCATTTATAAG 948579 28 100.0 33 ............................ ACAATCATCACACCGTCCATCGCACTAATTGTA 948518 28 100.0 32 ............................ TGTATAAGTTCGACGGAAAAATCCACCTAGCG 948458 28 100.0 32 ............................ AAAAACGATTGATTAAGCGTTTAACTTTGCTT 948398 28 100.0 32 ............................ ACTTTTTACCCTCAATGTTGGAGAACTCACAA 948338 28 100.0 32 ............................ ATAATTGCCATATCAAACACCCCACTAATTAA 948278 28 100.0 32 ............................ TCACTGGATTGGTCCGGGTAGTGATATTTGTG 948218 28 100.0 32 ............................ TTTTTCTAATGCCTCAATGAGTTTTTCGGCTT 948158 28 100.0 32 ............................ TAATGCGGAGGTAAAGTATGCCTCAAATTAAA 948098 28 96.4 32 .......A.................... TGATCAATAAAGACTTGCAACAAATCAGGATT 948038 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 72 28 99.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1999976-2001142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023516.1 Pasteurella multocida strain FDAARGOS_384 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1999976 28 100.0 32 ............................ ACATTGCACGGGCACCGTGAGTTTGCACGTAA 2000036 28 100.0 32 ............................ TTGCTGAAATCTCAAAAAACACAGCCAATGTG 2000096 28 100.0 32 ............................ ATCCGTCTTTTTAGCCCCTGAAAATTTAGATA 2000156 28 100.0 32 ............................ AGAGCTTTCTATGCCTGCTGGTAATTGTCCTA 2000216 28 100.0 32 ............................ AGTGAATCCGAAAGCCAAGCGCGCGCATTGAA 2000276 28 100.0 32 ............................ TTTTTTGGTAGCTTTTACTACCAAGGCTCCTT 2000336 28 100.0 33 ............................ ATGAATTGAGATACTGAAATGGCATCCATTTCT 2000397 28 100.0 32 ............................ AAAGAAAAAAATCTAAATCGGCATATTTAACG 2000457 28 100.0 32 ............................ GCAAACTATATTTAAAAACATATCGAGCAGTT 2000517 28 100.0 32 ............................ TTTTTCATTTTGACGTTCGATATATTTATACA 2000577 28 100.0 32 ............................ TAGTCGCTTAGTATTGCCCGCAAAATCAAGTA 2000637 28 100.0 32 ............................ ACGATAGTTAGCAGGCTTAGGAATTTTACGCC 2000697 28 100.0 32 ............................ AATCATTATTGCGGATTTAATCAATCCTGACC 2000757 28 100.0 32 ............................ TTGTTGGCTTTGAGGTTGTTGTGGTTGCGATT 2000817 28 100.0 32 ............................ ATTTTCAAACCAAAGCATATCAACACTTCTTC 2000877 28 100.0 32 ............................ TCTATTTTTAAAATCTTGAGTGGGCAAAGCCG 2000937 28 100.0 32 ............................ TTTTGTCGCAAACCATTTGCGCACCCGCTTGC 2000997 28 100.0 32 ............................ TACAGGCAAGCCTTTTTTCTCTGCTTCAACTG 2001057 28 100.0 31 ............................ AAAAGGCAGTAAATGACTTAGAGAAAAAAGT 2001116 27 92.9 0 ........-...............A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACTTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTCTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGTACACCATTGTTTAATGGCACTGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //