Array 1 323054-324973 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXW01000001.1 Salmonella enterica subsp. enterica serovar Monschaui strain 91-0516 NODE_1_length_557470_cov_4.23209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 323054 29 100.0 32 ............................. AGAGTGAAGCGTGGAAGGCGCAGATTCGTGGC 323115 29 100.0 32 ............................. CACGTTTAAAACGTGCAAGTTTTATTTTTCGT 323176 29 100.0 32 ............................. ATGGGCGCATATAACCGCGCCCTGAAACGAAC 323237 29 100.0 32 ............................. CGCGACGCGCGTGGGAGGTTCGAAAAAGAGAA 323298 29 100.0 32 ............................. CCGTCGCCGTCGCAGCTACCGAAGCCGTAGCC 323359 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 323420 29 100.0 32 ............................. CAAGTGAGGTTGCATTTAGTGTTGCGACAAAA 323481 29 100.0 32 ............................. TATGATTTCTTGCGGAAAATTCAGTTTTTGAG 323542 29 96.6 32 ............................T TCATCAGCACAGACGTTAATTGATGCCAATAC 323603 29 100.0 32 ............................. CAAACGATGCAATCATCGGCATGTTGTGCTCA 323664 29 100.0 32 ............................. GTGCATCAAAAGTTGCAGCAGAATCGAACATG 323725 29 100.0 32 ............................. GTGCATTCCGGCAACATAATTGAGTTTGCCAA 323786 29 100.0 32 ............................. CGAGCACTGGCTAAGATGCCACTGTTGAAAGT 323847 29 100.0 32 ............................. TTCTTTGGGTACGATACCGGATGGCGCGCCAA 323908 29 100.0 32 ............................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 323969 29 100.0 32 ............................. CGTGAAATGGGGCGGCGCATGAACATTAAATT 324030 29 100.0 32 ............................. GCTGATACGCAGACGATCACGAGCTATCTGGG 324091 29 100.0 32 ............................. CAAAACGATCCCAGCGCTTACGTTAAATTTAA 324152 29 100.0 32 ............................. GCTCTCTCGATGCTGAAGCCAGTGAAGGTATT 324213 29 100.0 33 ............................. CTGACGGGGTGCATTTCTCAATACCGGTGACAC 324275 29 100.0 32 ............................. CTCATAGAAAAATGGGACCCACGTTTCTTTAC 324336 29 100.0 32 ............................. GTAAAAACGGCGGCTGATCTTCCGGTAAGTAG 324397 29 100.0 32 ............................. TCCACGTGCGTGGTCAGTTCCCGTCATCGTCA 324458 29 100.0 32 ............................. GAGGGCTGGATGAGATTAAAAGCGGGCGGGGT 324519 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 324580 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 324641 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 324702 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 324763 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 324824 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 324885 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 324946 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 341134-343055 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXW01000001.1 Salmonella enterica subsp. enterica serovar Monschaui strain 91-0516 NODE_1_length_557470_cov_4.23209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 341134 29 96.6 32 ............................A TGTTTGATCCGGCATTTGTGGCGGGGTGAGCA 341195 29 100.0 32 ............................. GCCGCAGAAACCTGGCTAACCGGCACCGAGGC 341256 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCACTA 341317 29 96.6 32 ............................C GTAAATTTTACTGTAATCAATTGTGCTGTCCC 341378 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 341439 29 100.0 32 ............................. GAGCGCAGGGATGAATTACGATCCACGCAATA 341500 29 100.0 32 ............................. AATTTCCGGTTGAGCACCAGGAATACATCAAC 341561 29 100.0 32 ............................. CGCAGGGGCGCCCGCTGTGGCTCCCGGCAGTG 341622 29 100.0 32 ............................. GGCGGTTAAACCGCCCTTTCTCATATTTTCCA 341683 29 100.0 33 ............................. TTCCCCGGCAATCTGTTTCAGTGCTACTGGGGC 341745 29 100.0 32 ............................. CCTTGATTTTGAACCCGCTGGCGAACTGGATA 341806 29 100.0 32 ............................. GCGCAGCAAATTATTACTATTACGTTAACTGA 341867 29 100.0 32 ............................. GCTGTATTTATCGAATTACGCTGCGAGCTGCG 341928 29 100.0 32 ............................. AAAACCCGCGAGGCTAATCTGACACAGGCGCA 341989 29 100.0 32 ............................. GCTATAAATGGCTGGTCGAGGCTAACGAATAT 342050 29 100.0 32 ............................. CAACCAGTGGCCTGCGCCAATCACCGAAGATT 342111 29 100.0 32 ............................. CATCGACTTCGGCATAGCGGATTTCTAAGCAG 342172 29 100.0 32 ............................. TTCCCGCGATGGGATAGCTCAATCAAAATCAG 342233 29 100.0 32 ............................. CTGCTGAGTAGCGTGATCAGGTCGTCAATTGG 342294 29 100.0 32 ............................. GCTCTCAGTTTGATGGATGGGAAAAAACGCTT 342355 29 100.0 32 ............................. GCGGGAAACTAAACAGGGCCACGTTTGCGGTT 342416 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 342477 29 100.0 32 ............................. TTTCATGACCGATGAAGTGACAACCAACGACG 342538 29 96.6 32 ..............T.............. TTATATCCCCCCTCCTTGACGTTCTCTTCGGT 342599 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 342660 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 342721 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 342782 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 342843 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 342904 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 342965 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 343026 29 93.1 0 A...........T................ | A [343052] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //