Array 1 10404-15272 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000013.1 Anabaena sp. 4-3 contig015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 10404 37 100.0 37 ..................................... GATTTTGGCGAAATTGATTGTTCAACCAATGGCAATA 10478 37 100.0 35 ..................................... TGATAGTAGCAAAGTAACTCAAAAAGACTTGTGCG 10550 37 100.0 33 ..................................... ATCAACGACAATATGAACGCCGATGGCGGCGCA 10620 37 100.0 33 ..................................... CCAGCATACAGACTCGCTACGACTACGATGACG 10690 37 100.0 31 ..................................... CATACTGTCTACGCTAAAATTCTTGCAAAAA 10758 37 100.0 38 ..................................... CAGGACAGGCTTCTGTATTTGGCGGTGGTGGTGGTGGA 10833 37 100.0 43 ..................................... TGTTGTCATCTGATAGGCGAGTTTTAATGCTCCCATAAACGAC 10913 37 100.0 33 ..................................... ACATTCAGACGTGCATACATTAACCTTGGTATT 10983 37 100.0 35 ..................................... ATTTGCGATTGACAATGAAGAGAAATTAGAAAGCA 11055 37 100.0 37 ..................................... ATGATTCGTCAAACAATGATAACCCGTAGTTATCTAA 11129 37 100.0 33 ..................................... ACTTTATCGAAATGTGGGCATATCATTGTTAGC 11199 37 100.0 34 ..................................... AGCTAACTACTACGGCTATGAAGTGAAAGACATT 11270 37 100.0 36 ..................................... ATCCCTTACTTAGTTCAACTATAAACCTCTAGAAAA 11343 37 100.0 34 ..................................... TTTTATCGACTGATGAACCTTGTCATCCTGCAAT 11414 37 100.0 39 ..................................... CGCAAAAATAGACTTTGGCACTACATACCGCAAAGTAAG 11490 37 100.0 36 ..................................... TAGATTCCTTTCATTATTGTGTTAAGGTTTTTTGTA 11563 37 100.0 41 ..................................... CGGTAAACGCAACATGACAAAAGCGTTTCAAATAGCACGAG 11641 37 100.0 35 ..................................... TTGAGAGACGTGCTAGCCATAGCCAACTGAGTAAA 11713 37 100.0 38 ..................................... CTTGTACTGAAGCTGTACCCTTTAGTACACCTTGTCTC 11788 37 100.0 40 ..................................... CGGAACACCACGAGAAGCATTCCCAGAACGCCGCCACAAG 11865 37 100.0 36 ..................................... AGTACCAGATGGTTGCTTTAATTCCTGTATGCCAAG 11938 37 100.0 34 ..................................... ACTAAACTACTCTCAAGCTGGTGAAGTCAGAGAG 12009 37 100.0 36 ..................................... TTAAGATAATTCCTGCGAACGATAAAATAGGTATTT 12082 37 100.0 33 ..................................... CATAGTGCTAATAACCATGAGCAACAGCGAGTC 12152 37 100.0 36 ..................................... TTGCGGCTGACCAATATCAACAGAAAGCAGATATTG 12225 37 100.0 40 ..................................... CAGGAACTCCTGCCCCAGTGATAGCGATCGCGCCATTGTG 12302 37 100.0 34 ..................................... AGTGAGATTTCCTCCCAACGCCTCTTTGTACTGG 12373 37 100.0 37 ..................................... CCATTGAACCAGATACATCCAATAGAATGATACTTGG 12447 37 100.0 34 ..................................... ATTACTGGCGTAAACAGTTGAACAGCACTCTTGC 12518 37 100.0 36 ..................................... TTTAAAATTTTTACCTTATTCCCCGCCGCCTACAGT 12591 37 100.0 34 ..................................... TATTTTCTACTAGCTACCTCGACAAAGATGGTGC 12662 37 100.0 42 ..................................... CCGGCGGACGTGCAAAAAGGCATCGACACTGCTAAAGCTACA 12741 37 100.0 35 ..................................... TCTCCCTTCTTATTAAATCGAGCCTCAGCTAGCAT 12813 37 100.0 45 ..................................... GCGTGGATAGTGCTGGCATATTGACTTAGTGAACTCTGGTTGAAA 12895 37 100.0 35 ..................................... GCTCAATTCGTTCTTTTTGAACCCGAAGCGACTCT 12967 37 100.0 41 ..................................... TCCAAGAAGCAAGTATTAGGGGATGACGACCTTAAAGTGCT 13045 37 100.0 35 ..................................... GACTATTTCCATGTACATCTAAATCAACAATTACA 13117 37 100.0 32 ..................................... AGATTTTCGTGGTTTTTACAACGATAATCCCG 13186 37 100.0 32 ..................................... CTGTTTGCAGGTCGTAGAAAACCTTTCTTACA 13255 37 100.0 34 ..................................... CGAGAAATACAGAAGTACCTTGCGAAAACCACAG 13326 37 100.0 39 ..................................... GCTTCCTTGGGCTACCCCACTCAATAGCCAAGCTTTTGA 13402 37 100.0 34 ..................................... CAAATAGCTGGCTACAGCAGCAATATCGTCAGTT 13473 37 100.0 33 ..................................... AAAAGAGTAAATTTTAGTTTGCATTTTTTCAAA 13543 37 100.0 35 ..................................... ACATTGCCGCAAAGGCACAAGATACATTCAACCAA 13615 37 100.0 39 ..................................... TGAAAGTTGCTGAAGGCTGTAGTCAGCAAAGGCAAAAAA 13691 37 100.0 53 ..................................... CAGAAGACTCACGTTTTATCTACGACTGGGAGGGACAGAGTAGAGTATTTCAA 13781 37 100.0 37 ..................................... ATTCTAGAGGGGTGTGAGGGGATGTTGGCGTGACTGA 13855 37 100.0 34 ..................................... GATTGGTTGTCGGTTGTCGTCTCCCTGGCAGGTC 13926 37 100.0 32 ..................................... GTGATAAAATGCCTATTAAACAGTATCCTATT 13995 37 100.0 34 ..................................... GGGATAGCAGGGAGGGGGGCGAGTGACCGAGGGT 14066 37 100.0 36 ..................................... CTACAATCTTGACAAAGCAGAGGATCATACATCCAC 14139 37 100.0 34 ..................................... GCAACTAACAGGCGAGGATCTGTCAGAAGCCGCT 14210 37 100.0 33 ..................................... AGATAGGAAACCTTATTACAAAAGCTTTACAAT 14280 37 100.0 35 ..................................... AACCTAACGCCGCTAACAGAAACTTTGCTATTTAT 14352 37 100.0 40 ..................................... AATCTCTAAAACTATCACACAATTCAGACAGAGCATCGAT 14429 37 100.0 34 ..................................... AGAATAACCGCAGGGTCAACAGGCGGGAAGTCCC 14500 37 100.0 43 ..................................... CTTAGGGATAATTCCACTTTAACCCAATTGGTTAATATCGAAA 14580 37 100.0 37 ..................................... TTGATCTGGAATCAGACACGATTCTTTAATATCTGAA 14654 37 100.0 35 ..................................... CGGGATAATCGCCAATCTCCAAAAGTTCCTTAGCG 14726 37 100.0 35 ..................................... CATCGACCAGGGACGAGTACCGATAACCAATCGAT 14798 37 100.0 37 ..................................... CTAGTTCTTCATCCTGACAAACTACAACCAGATGAAG 14872 37 100.0 37 ..................................... GGCGAACATCCCAATAACGCAATTAACCCAGTGGCAA 14946 37 100.0 34 ..................................... GATGTTGGAGAAAAGTAAGGATAAACCATCAATA 15017 37 100.0 38 ..................................... CTTGACAACGCATATACATGGATGAATCCACAGCCCAA 15092 37 100.0 35 ..................................... AGCAGATAAAGATTATCCATTGCTACAAACAATTT 15164 37 100.0 35 ..................................... TTGAGATAAGGGTAGGCGATCGCGTTAAGTTATTA 15236 37 73.0 0 .........................TTCATA.CTTG. | ========== ====== ====== ====== ===================================== ===================================================== ================== 67 37 99.6 36 GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Left flank : TCCGTAAAGTCGCCCATTCCCAGCTTTACGTCGGTCGTAGTGGTCATGGTTTAGAAAAGCGGCTATCATACTCCTGTGTGCGTATTGATGTCAAAAATGGCAATCCACCTAAGTTTATTGTCAGACCTTTGGTAGCGGAACGGGTAGGGGATGAGTGGTTTGAGCGTGAGTTGGATAAGATTGTGATTTAGTAAGCTGTTGATGAGCGCAGTTTTACGCTTATGAGTGATTTAGAGGCTGAAAAGCTTGTGACGCAAGGATTTTTTAGACTGACTGCGCGGAGGGGTAGGTGTACAAAATTGGGTTTGGGGAAAAATGGCTGTATTCCTTATCCCGTCAGCTTTTGCAGATTTTTTTTAAAAAAACCACCCGCGCACCTTGCCCTGTCTGGGTTTCAGCGATTTTGCCCTCTTGCCAGTCACTTTTCTCGTGCTATGATAGACCCATCCGCGAATCTGAACCTTGAAAACCTTATATACATTGGCTTTCGGGCTGCCGCA # Right flank : CACCTTTCTCAATAAGCGTCAGGTGGGCATTGCCAATGACGCAAAACTAAGGCTTTCAGGAAGTTGCAAGCAATGCCCACCCTACAAAAATTATTATCAAGGAACAGGTGCAAGATGTGTGTATTAGAGATTGAAACACTACACAGTTATAGAAAATTAGCGTTCTTCTTTGCGCCTTTGCGCCTTTGCGCGAGACAAAAAAAGATATAGTTAACCCACGAAAATACCTGTAAAGAAAGCATTTCCCCACAAGCCCAAAATTGAGATAACGGTGCGTTAGGCGCGACGACAAGACGCAATGAAACATCGAAACAGACGCGCCTAACACACCCTACAAGCTATTAACTCAACTGGGCGACGAGTTGATTTTCCAAAAGCGTATCACTGGTTAACAAATCCTCAACGGTGATTCTTAAAAACCGTTGCTCATCCACTTGAAACATTACCTTAATACGATCGCTCCCCGGAAACCCAGGAGGTGTCAAATTAGCGATACTTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 376125-378891 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000026.1 Anabaena sp. 4-3 contig039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 376125 37 100.0 35 ..................................... GCTGACGACACAGAGGAAGATGATTTTGTAGTTGC 376197 37 100.0 33 ..................................... GTAATGCTCGTTTTCTTCAGTAGGCTTGTAATA 376267 37 100.0 37 ..................................... CAATTGCAACAGCTTGCAATTTCACTCCATCATTGCG 376341 37 100.0 42 ..................................... CCGGTGGGATATCCGGTGGGATATCCGGTGGGATAAATCGAG 376420 37 100.0 38 ..................................... ACTTGGTGAAGTATGGTATTCCTGTTGCTGTCAGCTTT 376495 37 100.0 34 ..................................... TCTTGAAATAGCTTTAATGCACTTGATTTGATAC 376566 37 100.0 34 ..................................... TTTGTGGTAAGAATGTCCCCAAGAACCACACATG 376637 37 100.0 43 ..................................... GCGAATATCTTCATCGGTGAAAATGCCAAGCTTTGCTTTCAGA 376717 37 100.0 37 ..................................... CCCGCTCCTACTCCGGTATTGTCAACTGAGATACTAT 376791 37 100.0 38 ..................................... ACAAGACGATTTCTCAACCCCCCAATATTGAATATATT 376866 37 100.0 36 ..................................... ATTGCTATCAGCGATATATGGATTACCATAGGATAC 376939 37 100.0 43 ..................................... TATTCTTTGTTGGTAGTAATCTCCATAAATTTTTCGATCTGTA 377019 37 100.0 34 ..................................... ATCCCTACGACCAACGACCGAAAATTAGACAACT 377090 37 100.0 33 ..................................... TTTTAAACATCAAGAATTGCCGAAATTCTTCCT 377160 37 100.0 44 ..................................... TCGGCATCGGTTACAGGGATATAAATCATAGTTAATATATTGAA 377241 37 100.0 37 ..................................... AAATGAATCTTCTTTGCGACGCTCGTAGCCGATTTTT 377315 37 100.0 36 ..................................... TGGCACTACAGATCCCAATTCCTTACCCATGTTCAC 377388 37 100.0 35 ..................................... CTCACTCCAATGAATCCCGAAAAATAGTGTTGTAT 377460 37 100.0 40 ..................................... GAAGATCAAATCTGGACATATACTCCGATGCCGGTCGGAT 377537 37 100.0 33 ..................................... TATCCCATCATTAATTGATGAGCCAATATTTTT 377607 37 100.0 38 ..................................... TCTTAATAGACCAGATAGCCCCTCGATTTGTGACCATT 377682 37 100.0 34 ..................................... CCACTGTGAAGCGGTGAAGAGAATGCGCTCTAAA 377753 37 100.0 43 ..................................... TACCAAAACAACATAGCTGGGCAAGCTGCAACTTCCCCAGCTT 377833 37 100.0 35 ..................................... GATGATAGATTCGACTATGCAGAAGATTGCGAAGA 377905 37 100.0 33 ..................................... TCTTGATTTCGCCGTAGATGGTGGGTGCGGTCT 377975 37 100.0 35 ..................................... TTTTTTACCCTCCTTAAATGCAACACGTACCAGAG 378047 37 100.0 34 ..................................... TTTGTACCTTTCTTTTTGATGCGTTTGCCTGACA 378118 37 100.0 35 ..................................... TAGAAACCTGATGCTGGAAAGGCTCGTACAGCTAG 378190 37 100.0 32 ..................................... GGATCAGGAATTCCATCGCCGTCATCATCCAA 378259 37 100.0 35 ..................................... TTACAATTAATTTTGGCGACATCTAAACCCGAACG 378331 37 100.0 38 ..................................... ATAGTAGCCAAGTGAAGAATGTTTGTGAATTGTCCATT 378406 37 100.0 34 ..................................... TCTCCTCGGAGGAAGCAGACCGAATTAAAGTTCT 378477 37 100.0 39 ..................................... AGATGCCATTAGAGCCAAGCATTCTTCTTGGCCAAATCC 378553 37 100.0 42 ..................................... TACTGGGCTTCGGCTGCTTCACAGGAGGCGAGTTTTTATCCT 378632 37 100.0 34 ..................................... CTGGGATTGGGAAGCGGAGAAAATTATCGGAAGG 378703 37 100.0 42 ..................................... AGGCAAAAAATAGACGATTCCATTAGTATCATCGCTAACCAG 378782 37 100.0 36 ..................................... AATTCATGAGTAGACCAAAGTCAGATGATCCTAGGT 378855 37 75.7 0 ..........................ACCCAA.TTG. | ========== ====== ====== ====== ===================================== ============================================ ================== 38 37 99.4 37 GTTGAAACATTAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAAAATTAGTTAGCATTGGTGAACAACTGTGGTTATCCCTCACCCCAGACAAACTGCACTTTTTCGATCCAGACACCGAGTTAGCGATTTTTCCCTAGTTGGTATTGTTGACTGGAGACAAATAAATTCAACAGTCAACAGTCAACAGTCAACAGTCAACAGTCAACAGTCAACAATTTTGAATTTTGAATTTTGAATTTTGAATTTTGTAGGCGCAGCCTTCCCGCAGGGTATTTTGAATTGATTTGTCCNNNNNNNNNNCTCACCCCCTCCCCGCGCGGATGGGGGGGTGTTAAAAATCGGCTTTGAGCAACAACGGCTGAAGTTTAGGCAGAGTCAGGCTTTTGGCGATTTTCTGTTTCAAGACACCCGCGCACCTTATCCCGCAAGGGTTTCAGGCATTTTGGTACTTCCCAATCAGAATTTTTCATGCTACAATTACACCATCCGCGCAACCGAACCTTGAAAACTAAATACAGACCGTGTTTCAGGTCGCCGCA # Right flank : CTAGTTATCAAAAAACGTCTAACTTTGAGTAAATATTTATGAGTTTGAGTATTAATAAATACTTTAAAACAGTGTTTTTGTATGAGACATATACTGTTATGGGACAGTAGCTAGCAACTTACGTTATTAGGGATTGAAACTAATGCTTAAAAAGGATTACGATCAACGGGTGGTATACTGTCACGTAATGCTTGCCAGGTTAGCGTTCCTACTCTACCATCACCGACCAATCTCTGCGATCGCTGAAAAGCTACCACTGCTCTAGAGGTTCTAGGGCCATAGATACCGTCAATAGCTCCGTTATAAAATCCTAGCCATTTCAGAACAGCTTGCACATCTCTCACAGGTTGTCCACGAGAACTACGAGTCAAAAGGGGAGCTTCTAAAGGAGAGTATTTTGAAAGTCTACCCACAATTTGGAGATTAGTATTATTTGCTTGTGCCTTAGTTGGTGCAGAAATGAAAGTAAATCCACTTAAAGCTAATGCAAAAACCAAGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACATTAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 95841-93900 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000050.1 Anabaena sp. 4-3 contig107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 95840 37 100.0 40 ..................................... CGCAGATACTTCTTTTGTTGTGTAAAAAACTCTAATCCAA 95763 37 100.0 33 ..................................... GAAACATTCGCCAGAACCATCCCGGTTACACCA 95693 37 100.0 35 ..................................... ACCTGTGGATGGAAGGACGGAAGATACATCATCGA 95621 37 100.0 35 ..................................... AGGATTTATAGTCGCAGTGGAATTACCCGCGTAAT 95549 37 100.0 34 ..................................... AGATTTAATCCCATCTCTGGAATACAGAACTCAA 95478 37 100.0 41 ..................................... TGGGAAGGCATTGTAATCAATGCCTTAGGGATAGATATAGT 95400 37 100.0 35 ..................................... CCGTGATAGTAGCAATTGCCTGTAAGGTCTATGAG 95328 37 100.0 34 ..................................... TAGCACTATACGCTGATAATCGTACATCAGTAAA 95257 37 100.0 40 ..................................... AACTTTTTGGCAAAATGATAGATTTACCGATAAGTTTACC 95180 37 100.0 42 ..................................... GCCAACTCAAACCTTACCAAGCTGTGTAAATGGTAGTTTCAG 95101 37 100.0 34 ..................................... GTCTCCAGCAAGACTCCTAGCGAATAATGAATTG 95030 37 100.0 40 ..................................... TTCTGTCCCATCGATATCTGGGAAAACTTGTACGACCAAG 94953 37 100.0 35 ..................................... AAAAACAACCCACGCACGGAAACGTGATCATCTAT 94881 37 100.0 33 ..................................... GCGTATACCTCGAAATACAGCCATTAACTTGGG 94811 37 100.0 34 ..................................... GAATACTATGATTCTTAATAGACTCTAGTTCATT 94740 37 100.0 43 ..................................... ATGACTTGACTGTTTACCCTTGCGGCTGCTTTGACTCAACCGT 94660 37 100.0 34 ..................................... CCAAACAAAAAATCCCAGGAACGTTGCCGGAACG 94589 37 100.0 34 ..................................... ATCGCACCACTAGCGATCGCCTCTCTCTTCACTT 94518 37 100.0 35 ..................................... ACGGATTCATCGCTAGCCCTTACGGTGCGGGCGAT 94446 37 100.0 35 ..................................... TGCTAGGTGAGGGTGTCTCTCCTTAAAATCCTGAA 94374 37 100.0 35 ..................................... GAATTTGGATGTGAGCTAGTATTTTCCAAATCGGA 94302 37 100.0 35 ..................................... TTCAAGGTATTTGTACAGGCAGCCTTTTTGTTTAC 94230 37 100.0 34 ..................................... GCCTACTCGGATAGTAGGATGCACGGATAAAATG 94159 37 100.0 37 ..................................... CTGAAATTAATGCCTCTATTGGCTTTATATTCTTCGC 94085 37 100.0 34 ..................................... TTATAAGATTTCGCCCGTCCCAATCGTAGCCCTC 94014 37 100.0 38 ..................................... GATAAACAGAATTTCCAAACTAACTTATTTCCTATCTT 93939 37 91.9 0 ........................T..A........A | TG,T [93905,93909] ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 99.7 36 GTTGAAATTAACAATAATCCCTATCAGGGATTGAAAC # Left flank : GACGGTGCGGCTTTATTACTAGGGTTACAGTCAATAATGGCTGTATCTTCTGGTTCAGCTTGTTCATCAACTAAAACAGCACCTTCTCATGTACTAACAGCTTTGGGACACTCAGAAAAATTAGCTTATGCTTCTATTCGGTTTGGCATAGGACGGTTTAATACACAAGCCGAAATTGATTTAGTCGCCAAACACGCGATCGCCACCATTGAGAGTTTACAATCAATTACAGTGAGTTAGCGATCGCTCCCCTTTGACCATTTTCCTTACCTGATGCGCGGATGGGTAGGTGTTGAAAATCGCTCCTCAGCAAAAATCGCTGTATCCCTTACACCATAGGCTTTTGCAGAAAAATTAATTTGAAACCATCCGCGCACCTTACCCAGTAAGGGTTTCAGCTATTTTAGTCAAATCAACTGACATTTTCTCGTGTTATGATAGACCCATCCGCGAATCTGAACCTTGAAAACCTCATATACATTAGCTTTCGGGCTGCCGCA # Right flank : AGTATTGTTATTAACAGCAAAGTCTCTCAAACCTAACCCCCCCAGCCCCCCTTCCCTACAAGGGAATGGGGGTGTAAAAAAGCCTCTCTCCTTGTAGGGGAGAGGTTTGGAGAGGGGTTTTTATTATGCTGATTGATTGGAAAAACATCATCTCAGCAATCAATAAGGATCATAATCAAACCTACCCCGCTTGACGCTGCGGAAATAATAACCCCTAGTGGGTAGATTATTTAAATCGAAAGTATCACCACTGGGAAAACGCCAAATTTTGTAGTCGTAATAAGTCAATGGGGTTCCGGGTTTGCAGACTTCTGGCGGATGATCTCCTAAAACCAAATACGCCGCATTTCTCCCCATGACTTTGGCAATACCATATTTATCGACAACTATTGATGTTTCTTCACTAATCGCAATACCTAAAGCAGTTTGACAAACACCGTCTTGAATTTGTCGGGCAATAAAGGCCATAATTCGCCCCATGCGTTTGCGAGTGTCAAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTAACAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 34557-36205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000065.1 Anabaena sp. 4-3 contig176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 34557 37 100.0 34 ..................................... AGAAATTATGAACTTGGAGAATTTTAATTTTGCT 34628 37 100.0 32 ..................................... AAGTATTTGAATTTACGATAGAAGCGCAAGAC 34697 37 100.0 34 ..................................... TTAAAATTAGTTCTTGACTTCTGAGATTTGATTT 34768 37 100.0 37 ..................................... AAGAAATCGCTACAAACTTATCTGGCACGGATTGGCA 34842 37 100.0 36 ..................................... TGACACCTTTGCTACCGAAACGGTGACATCACTAGG 34915 37 100.0 38 ..................................... ATAGCGCAGCTTGCAACGCCGCAAAAAGGCGATCTATA 34990 37 100.0 36 ..................................... TAAAAATACTCTCAATGATGCTATAATAAAAAAAGT 35063 37 100.0 34 ..................................... TTGTGAACGCTAACGGGATCGTGATAAACATTCC 35134 37 100.0 38 ..................................... ATCTACACCCGACCAACGCCAGTGGGCGATCGCACTCG 35209 37 100.0 34 ..................................... GCTGCTTCTACAGCGATACGATGTGATGACGACG 35280 37 100.0 42 ..................................... GGGTGGTCGTAGAAGGGGCAATGCAGATTCAATATCTGGAAG 35359 37 100.0 35 ..................................... AGTAAACTTCCAGAAGATGCTCAAGAAAGAATACA 35431 37 100.0 36 ..................................... TATGTCCTCGCAAAATTGCTGTAAAGCTTTTTTGCC 35504 37 100.0 35 ..................................... CATGGCGATCGCGCTCAGGAAATCGTTGACCAATG 35576 37 100.0 34 ..................................... GCCAGAAAGAAGCGGCAAGAGATAAGATAACTAG 35647 37 100.0 33 ..................................... AAAAATGCTATTGCCTCATAAGCTAAATAAACA 35717 37 100.0 33 ..................................... CTGTCGGTGCTATTGGTCTTTTTCAATGATCTT 35787 37 100.0 37 ..................................... AACAATGGCTGAATACCAGCTTAAGTATGACTACATA 35861 37 100.0 34 ..................................... ATCTCAATGAAACAGGGTAGGCGTTTAACCTACC 35932 37 100.0 40 ..................................... TCACTGAACAGATGGACGCAATGACAACACGCGCACAGGC 36009 37 100.0 44 ..................................... TCGAATTCACGTCTAATAATGCGTTTGACTTCCGATGGTTTGTC 36090 37 100.0 42 ..................................... ATCTGCCCTCAAAAAGCATGGGTATAAGTTTGGAAGTGGGAA 36169 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 23 37 100.0 36 GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Left flank : TGCTCAGACCAGTTTTGCTAATGTATTCATGAGTGGAGATTGGATAGTTAACAGACATGGTTCTTGGTCACAGGAGAAAGCTTATGTTACAGGTTTAGAAGCGGCAAATTTAGTCATTTCTAATTTGGCAAGCGGTACACCTGCTGAGATTTTACCCGTTGAGCCAGACGAAGCCCATATACAAGTGGCTAGAAAAGTTAATCAAACAGTGCGAGAATTAGGTAAATCTATTCTGCCTGATTTTTGGTTGCCGTAGGGGCGGAAAGTATTCAATTGCGCGGATGGGTAGGTGTAAAAATTTGGTGTTAAAGCAAAATGGCTGTATTCCTTGTGTCACAAGCTTTTGCAGAAAAATTTATTTAAAACCATCCGCGCACCTTATACAGCAAGGGTTTCAGCGATTTGTATAAATCAACTGACATTTTCCTCGTGTTATGATAGACCCATCCGCGAATCTGAACCTTGAAAACCTCATATACATTAGCTTTCCGGTTGCCGCA # Right flank : CAGGCGATATATTCGGGGCGGGCAGGATGCCCAACACCACTTGCTACAAGTCGGCACAGCCGCCCAACGCAGTGGCTCCCCCACAAGATTGATAATTGATTTTCGGGAAAGCCCTAAGCGCAGCACAACCCAACTCAGATATTGGTGTTGGGTTTCCTCCGTCAACCCAACCTACAATTTTTTGGCATCACTTTAGCTGTGTGAGTCTACTACAGTGATGAAAGACGGAAACTAAAGCTAGAAGGAAAAGTCTTAGTGTGTGTTAAAAAACATCTCGAAGATGTGAAGCTGAGATGAGTGACAAATGAAAAAAACACTGGCTTTATTTTCCTTGGGTTTGGGAATTACCCTATTTCAGCCGTTACCGATAGCTGTTAGTCAGGTGTCGCCAACGGCACCCACGACACCAACCGCAGCACCAGCACCTTTAAAACTGATTGATATTGGCACTTGTACACCCCGAAGTGCTTGTTTAGGTTGGGATGAACAGTTATTTTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 19751-20221 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000061.1 Anabaena sp. 4-3 contig160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19751 37 100.0 34 ..................................... TTAAATCAGCTATATTCATGTTTTCTCCTGTGTA 19822 37 100.0 37 ..................................... GCTCGAACTAACTCGGATTTGAAAGTTTCTACATCAG 19896 37 100.0 33 ..................................... AACGGCTGAGGATAGACTGTGGAAAATGGCTGA 19966 37 100.0 35 ..................................... GGGAATGTTGAATATGAATCCAAAATCTGCCCTAG 20038 37 100.0 35 ..................................... GGACGATTGATCCAAGACATTTTTTGTGAGTCAAC 20110 37 100.0 38 ..................................... GTAGTTTGGAGTGCATTTTCTGTAATTCACGCTTGGAA 20185 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TTTAATTCACTAATCCGAACCTTGAAAATATAATATTGTTATGATCGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCGTCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCTGTAGCCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATATTTTTTTGGCAAATCGAAGCGGGGTCAAAAACCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTGAATCAAGAAATTAGTGCGTCAATTGATTTACTTTTTTCATTGTCGGCAGAAGCAGCTTTTTAACAGACTTGTCAAATAGACATCTGAAAAGCTTATATAACAAGGGTCTAGGCGGGAACA # Right flank : GACTTAGATAATCAATCCTAGAAAAAACGCTCTTAGTTTATCCGTCTTTGCGCTACAAAAATCTTGTCAAATGGGGTAGGGTTGAAAGGTGCATCCGACTTGTAAGCGTATTAAACCTTAAAAACATAAAACAAAAAATTAAAACTTATTTAATTCTGATTTTTTATATGTAAGAATTAGGTTCTGCACAACCATCAATTCACTTGTTGAAGTAATATTATTGTGTTAACACTTGCTTGTAAGCAACACTGTAACAATCTAGAAGGAAAAAACGACATTAATGTGCGAAAACCTAGCATAACTAAATTGATTATAAAAAATAGCCGAAGCGACATCAATTTGAGAAAACCGACACTAAATTGCGAAAAGCGACATTTAATTTGCGAATGTACAGATTGAAAAGCCAGCAGTCGGATTTGAACCGACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCAAATTAGGTGATGCGTTTGAATCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 107929-106651 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000061.1 Anabaena sp. 4-3 contig160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 107928 37 100.0 34 ..................................... AGACATGGTTAACACAGTCGATGGTACTGGTCGA 107857 37 100.0 36 ..................................... GATAATACTATCGATGCCTCACAACAACTTAATGAG 107784 37 100.0 34 ..................................... CAATTTTATCCGCCTTCTCCCTTGCCATATTGAC 107713 37 100.0 36 ..................................... CTTCAGTAGTATTTTTTGGAGGACGACCAGGGGGTC 107640 37 100.0 36 ..................................... AAAGTATTATCAGAATAAACATAAGGTAAATCTTCA 107567 37 100.0 36 ..................................... TGATATACGTGAAACGACCTCTTAGCAACTCTGGCA 107494 37 100.0 33 ..................................... CACACATTAATTACAACTGCATTTTTAAAAACT 107424 37 100.0 34 ..................................... TAGACTTATTGACAAAGACAAAAAGACTAGACAT 107353 37 100.0 36 ..................................... TTTTAGGATCACTTTTTAAGAACTGCGATCGCCCAA 107280 37 100.0 32 ..................................... TAGCAAAGGAGACTGATAGACGCAAATCTAAC 107211 37 100.0 35 ..................................... AACAAACCAGAGGCTTTTTATAGGATTAGCCTTGA 107139 37 100.0 43 ..................................... TATTCGCTTCTAAGGCTTCATGGAAGAATTTTGTACTACCACA 107059 37 100.0 35 ..................................... CAAAAAATGAAATTGGGCGAAAGCTGGGGGATTTT 106987 37 100.0 42 ..................................... AACTTACCCAATATTCTTCAACCCATTGAGTGTGTTCGGGAG 106908 37 100.0 37 ..................................... ATCTGCGATATGATTGTTGATTTTGATGCTATTCAGT 106834 37 100.0 34 ..................................... GGGGTTAATTTTTAGATTTAGAACTGAGAATAAT 106763 37 100.0 39 ..................................... AAAAATGCACGTTTTTTGTTGCGTGCGTTCAACTCAGCC 106687 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 36 GTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Left flank : CACCCAGTGATTACCCGGAATTTGCTGAGTTTTTGGTGGAACAGGGGATTGATTCGATGAGTTTGAATCCTGATTCTGTGTTAAAGACTATGTTGCAGGTGGCGAAGGTGGAGGAGTCGATTAAGGATGTTTGAATTTTCGACCTAACCCCCTGGAATATGTAGAGACGTTTCATGAAACGTCTCTACAATTTAGGGGAGTGGGACTATGGTAGAATTTGAGGCTGTCTAAACATTCTCTTGGGGACTGGGAATTGGGTAAAAATTGTGTTGAATGCGCGGATGGGTAGGTGTACAAAATTGGGGTTTGGCAATAATGGCTGTATTCCTTATGGGGCGGGCTTTTGCAGAAAAATTAATTTAAAACCATCCGCGCACCTTACACAGCAAGGGTTTCAGCGATTTTGCTTAAATCAACTGACATTTTCTCGTGTTATAATAGACCCATCCGCGAATCTGAACCTTGAAAACCTTATATTTATTAGCTTTCCGGCTTCCGCA # Right flank : AATAAACTGAAGCAATTTCTTTGCGCCTACTCTGCGAGAACGCCTTGCGGCGAATGCGCCTACCCTGCGGGTTCCGCTTTAGCGGTATGCGCGAAACATAAAATAACCTTCTCAGCAACACCAAAAGACACATACAACAAATCTAAAGAAAAACAGACATTGCTAAAAGGAGTAAAGTCTTGAAATCATAACTCCTGACTCTCTCTGCGCCTCTGCGCCTCTGCGTGAGATAAATCAACCCCATACCCCAGAAACGAGTCAGAAAAACACAACCCCAGGGTTAGAGATGGGTGCTAGTCGCCGTCCTATTCGATAATATATAGTTCGTAGTGAGTGGCTGATTGCTGATGACAAGGATGATGAGGACTAAAGTCCTCACTACAAACCTTTAATGACTCTTGACTAATGACTAAAAATCTGTATCGCATTGGCTTGCTGGGGATATTTTTGATATCACTCGCTTTCCGGTTTTGGGGACTCGATAGATTTAATACTTTGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 26539-22539 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000076.1 Anabaena sp. 4-3 contig286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 26538 37 100.0 40 ..................................... TTTGGAGGAAGCTAGGTTTTTCACTAGCAAGGAAATCAAA 26461 37 100.0 38 ..................................... CTCTAATACAATGTCATCAAGAGGATTAATCATGAACA 26386 37 100.0 39 ..................................... TTATATTAACAGACTTAGGGATAGGAACTTCCGTTACTA 26310 37 100.0 40 ..................................... TTTTGTGTAGCCTGCTAAGGCTTCCTCATAATCTTCTGGT 26233 37 100.0 39 ..................................... TGTTCGTACAGGTTTACGAATCGTTCGGCATCCTTGGCA 26157 37 100.0 41 ..................................... ACATAGTTGCTACCAGGGAGAAAAGGAAATTGTTCTAAGTC 26079 37 100.0 44 ..................................... TTGATTTGACAGTAATCTTTTAGCCATTGCCAGGAGTCTTTAGC 25998 37 100.0 43 ..................................... AGCTACTTGAGCTTGTAATTGAGCAACAGTGGTGTTTTGAGTA 25918 37 100.0 41 ..................................... TTGGATGTATTCGTATCCAACAGCACCAGGGATACTAAACA 25840 37 100.0 41 ..................................... CCAAGACTTTGTAGCTGAAAAAAGATTTGGTAGTGAGTACA 25762 37 100.0 37 ..................................... GAGGTAATGTCAAGGTCACAAAGAATCAAGGAATTGT 25688 37 100.0 41 ..................................... AAGGAAATAGGTAGTTTACTAACACTTCCCCCCTTGTCCAG 25610 37 100.0 45 ..................................... GCTTCCTTATAGGTAATAGGATTGTCTTTGAGATGACGGTAAATA 25528 37 100.0 42 ..................................... TTTACTTAGATATATGGAGTCCATAGCATCTTCATCTCTAAT 25449 37 100.0 42 ..................................... AAGCAATATAAGCATCAGTAAGAGGTTGGCACATTAAGTTTC 25370 37 100.0 38 ..................................... TCCATCTCTGCTTAGTTTGCCATATTTTTCCACCTTGG 25295 37 100.0 40 ..................................... TTTAGTTGTCCAAGCAGCTTTCATTAATTGAATTCTACGT 25218 37 100.0 40 ..................................... GTAACTTCTCCATCTTTTCTCTGCCAAGCTGCAACATATC 25141 37 100.0 48 ..................................... TCTCCACAACTCTCAAACTCTACATCTCCACATGAACTTTCTGTACCT 25056 37 100.0 42 ..................................... TCAATATTTTCTTTCCTTTATTCTTCTTCTATATAATAACCT 24977 37 100.0 40 ..................................... TTGGCGGAGTTGTACAACTCCAGAGGGAATTACTTCTTGG 24900 37 100.0 46 ..................................... TTCTCTCATTAAGAATGAGAGTTCTGTCCTGGATAAATTGCTCAAA 24817 37 100.0 54 ..................................... TTCATATAAACTCTCCCTTTGTTATGAGCATAGTTCTGCTTCACTTCAGCTCAG 24726 37 100.0 39 ..................................... TTGCAGAGTAAGTAGCCAATAACTCTGCTGTTTCTTCAG 24650 37 100.0 36 ..................................... ACTTTGTAGGTAATTAAATACATTAGGAGACTTACT 24577 37 100.0 39 ..................................... TCAATCTCTGTTAAAGATTGTTGAGAGTACCCAGGATAC 24501 37 100.0 41 ..................................... AGATTTTAACCATCCTTGATAAAGAAGGTAGCATTTGGAAA 24423 37 100.0 36 ..................................... GCTAATTTGAAATTCCACCCGTATTCAGAATTAGTT 24350 37 100.0 37 ..................................... ATAAAAGGAAATAAAGCAACCATGTGAGTTCTCCTTG 24276 37 100.0 44 ..................................... TTTAGTGTAGGGTAAGTAGACTTCTTCAGTAGCCTGATATCCTT 24195 37 100.0 44 ..................................... TGTCTGCCTTTATTTCCAACGAGTTCCCAATCACTATTTAGGGA 24114 37 100.0 37 ..................................... ATAAAACCTCCACCATGATATCTTGCCAGATACCTAC 24040 37 100.0 40 ..................................... TCTTTAATAGCAGCATATTTTTCTTCATCTCCAATGAAGG 23963 37 100.0 46 ..................................... TTCTAATTTCAATCTCAATTAACTCACCTGCAACTAATTCTTTTAC 23880 37 100.0 49 ..................................... TTCAGGGAAGTTAGTATTCATGTGCTCAAAGAATCCCTTAAGGTCAAGG 23794 37 100.0 37 ..................................... GTACTGACTCATCGGCAATTACAGCATAAGATTCTTG 23720 37 100.0 43 ..................................... TTAACCTTCTTACCTTTGAGACTCAAATCCCATAGAGCATGAG 23640 37 100.0 43 ..................................... TAAGTAAGTTTACATACTTTCTACTCATATAAAAATAATATCG 23560 37 100.0 43 ..................................... AAGAAATAAAATATAGAGTTGACATTGAAGTAAATTTATATGA 23480 37 100.0 40 ..................................... TCCTGTCTCCATATTCTTAGCTGGAATATGGATACCTTCA 23403 37 100.0 36 ..................................... AGGAACGCTACAGCATCCTCTTGATAGGGGACGCAT 23330 37 100.0 44 ..................................... CTTAAATCAATTCTACAAAGCAGTCAATTTGCTTATCAATTGGT 23249 37 100.0 38 ..................................... CTTCTACTCCAGTACCTTGGTCTACAAGAACCCACTTG 23174 37 100.0 38 ..................................... CTGCAAACTATTACTCCGTTATTTTCTTCTCCTTCGCA 23099 37 100.0 40 ..................................... TTCTACCTCCGCATGATACATAGTTATCAAGTTGTCTTGC 23022 37 100.0 36 ..................................... TCAAAAAGGGCTTCAGTTAAAGAGACTTGAGACAAT 22949 37 100.0 40 ..................................... TAACATAGGTGATCGTTTGGAGATTACCTGTGATGATTAT 22872 37 100.0 36 ..................................... ATTCCCAACTAGTAGGTTCCATTTTATGACTTACAC 22799 37 100.0 37 ..................................... TCCTTTGTTAGCCAAGGTGACTAAATCTTTTCTGTTA 22725 37 100.0 38 ..................................... TCAGGAATTATCCAACACCAAGCCCTCACATCTGTGTG 22650 37 100.0 38 ..................................... ACAGCTAACTTAGGTTCACTCAGCTTATTTTGTTCAGA 22575 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================================== ================== 52 37 99.9 41 GTTAAACACCACCTATTCCCCGCAAGGGGACGGAAAC # Left flank : TGGATGAGTCTACTTTGAGTTCTCTGTTAGAGAAGCGTTGGCTACCCACATTGAAATTGAATGAAGACAGTTTGAGAATTTATCCCCTTGATGCAACAGCAAAACAGGAAACACGAGTTTATGGAAGTCAGCCTCCTTACGAACCGCCGGATTATTTAATTTTGTAAAGCTTAATGTCGCATTTCTGGTAGCAATTTACAGCCTGAAGTTGATGATTTTGCTTGTGTTTGGCTATTTGTAACGGAATGTAAACTTAGCCGCTAATTTGTCGCGGCGAGTTATGAAGATTATGGAAAAGTAAACTTGTGTTAATAAAAGAAAAGTTAGGTTTTTCACCTTGACTACTTCAGCTTTTTCGTTTATATTACCTATAAGGCTGAATTTTAACGAAAGCAGCTTAAAAATTTGAGTACGGATACTTTAAGTCACATTGTCTTATCCGTAGCTCGGCGCAACTGAACCTTGAAAACCAAATACATCAATAGTTTCCACAGGGTAGG # Right flank : AATGGGTGACGGTAGTTACCGTCAAAGTTAGTTATTCCAGGGGAGGCGGATTTATGATGATGTCTGCTGCTGATAATGTTGTGAGATTAAATGCTCTCCATTGACGGGTGACGTACTTGAATCGCCCAATACCAAAGTCTCTATTAGTAGTGAAATTATCCCATCGAGAACGCATGGACGACCAGTAGTCACCACCAATCGAGAGTAAATACCGAGCGCGATCGCGATCATCTGGTTTAGATAGGTCATCAATAATCAGTCTAGCTTGTGCTGTCGCTAATAATCCAATTGTATTTTCTGGATCAAATTCCACTCTTTTGTGATTCCAAAAATGGAAGTTATATCCATTACCGGCTTTTGTGGAAATACTTCCATCAGGTTCAACTCGGATGTCTGCGGGGATGTTAATATCGCGTTTGAAGTCCTCTCGATATGCTCTTCCGCGAACCCTGAGAGAACTAACCAATAAATGCCATTTATAATCAGATTTACTCAAAGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACACCACCTATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 33937-32524 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHJ01000068.1 Anabaena sp. 4-3 contig186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 33936 37 97.3 33 ...T................................. AGAATCATCATGATTCTCAATTCCAACTACCCC 33866 37 100.0 35 ..................................... CACTTGCACCAGTATTACCCGGACGTATTTCTATC 33794 37 100.0 37 ..................................... AGGGTATATGGGCTGAGTATCCATTTACCCCAGAAAG 33720 37 100.0 37 ..................................... AAAAATGTATCCAGAAACGTACCTAAGGAAGCTTTGA 33646 37 100.0 34 ..................................... ACCAGCAAAAAGGTTAACTTCAGGGAAATTCATG 33575 37 100.0 37 ..................................... GAAACACTCAATACATCCAGTGTAATTGGACTTTAAA 33501 37 100.0 36 ..................................... TTTTTTAGCAGCAGTTGGACGTTCAACTTGATAGTT 33428 37 100.0 37 ..................................... CTTCCGGGAATCCTCCACCAAAGCTACCGTAAGGATC 33354 37 100.0 36 ..................................... GCTGAAAGACCAATGATAGGGCTAGATTTAGCTAAT 33281 37 100.0 35 ..................................... ACGGCATACGGTAGGGCGATTCTGAAGTTAATGCA 33209 37 100.0 34 ..................................... TCAAGCAAGCTTCTATTTGGTGTTTAAGGCTGCG 33138 37 100.0 34 ..................................... TCTGATTGATTACTCTATTAGCTAAAAGACCAAA 33067 37 100.0 35 ..................................... CTTCACCCACACATGAGGAAGAAGCTCATATACCC 32995 37 100.0 33 ..................................... AATTACATAACTGATATACAGAATTTTAAGTGA 32925 37 100.0 36 ..................................... TGAATCTCCCTAAAGATTCAAATTTGGTGATCGGGT 32852 37 100.0 34 ..................................... CCGCACTTGATTTCATCCCGAAATATTCCACCAG 32781 37 100.0 33 ..................................... ATCAGCAGGTGCAAAGTCATCCTCTTCCGAGTC 32711 37 100.0 43 ..................................... GACTTGGTTCTCGCCCCCAGCCCAACGGCTATCGGAGTGGCGA 32631 37 100.0 34 ..................................... ATTGCTTTTTTTGCTCATAGCGATCGCTTGAGCG 32560 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 20 37 99.9 35 GTTGAAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : AACTAATGTGGTTATATCCTACGACATCCCAGAGGACAACCGCCGCACTAAAATTCACAAAATCCTCAAATCCTATGGGCAGTGGGTACAGTATAGTGTGTTTGAGTGCCAGCTTACTGATACTGAATACGCCAAATTGCGATCGCGTCTCCACAAATTGATTAAACCAGACACCGACAGCATCCGCTTTTACTTTCTTTGTGCTTGCTGCTTTGGTAAGATTGAACGCATAGGTGGCGAACAACCCCGCGACGAAACCATTTTCTTCGCCTAATGCGCGGATGGGTAGGTGTACAAAATCGCTTTTCAGGAAAAATGGCTGTATCCCTTACACTACAGGCTTTTGCGAAAAAATTAATTTAAAACCATCCGCGCACCTTACCCAGTAATGGTTTCAGCTATTTCACTCAAATCAACTGACATTTTCTCGTGTTATAATTGACCCATCCGCGAATCTGAACCTTGAAAACCTTATACAGTTTAGCTTTCGGGCTTCCGCA # Right flank : GCGATTCCAATGGTGAACCTGTAGATTATAGGGTTGAAATTTGAACTAATCTTTGCGCCTTTGCGCCTTTGCGCGAAACAAATTCATAATTCAAATCAGCAACACCAGAGAATCAATAACGACAAAAAAATAAAACCCCTGGTTGTGCTAACCAGGGGGAGAAGGTTTCGCTGAGATAAGTCAAGACAACTACAAGATGACTGAAAACAATTCCTGAAAACAGATAAAAAAATCCTGCTAGTAGTCAGTTAACTGTGTTTGAGCAAATTACGTACAGCTTGCTCAATATCAGTTTCTTTCATCAGAGACTCACCTATCAACACAGCATTTACACCAGCCTCAGCAACTAAAGATAAATCAGCGCGAGCATACAAACCCGATTCCGCGACTACCATCACACCCAAATCTTGTAACTGCGATCGCCTAGCCGCTAGCAGAGTTGGAGTAATGCTAATATCAATACTACAGTCTGCTAAACTTTGGTTATTAATGCAGATTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //